CI01000009_15975897_15978506 (RDH1)


Basic Information

Item Value
gene id CI01000009_15975897_15978506
gene name RDH1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15975730 ~ 15978506 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_15975897_15978506.mRNA
GTGTTCTCCAGCGCTGATCCGCTGTGCTGCTGGGTTTCACTGGCTGCTCTAGCGCTCGTCGCCGCTGTGGTCTGGTTCTACAGAGACTCCCGTCACATCACCGGCATCCACGAGAAATACGTCCTAGTGACGGGCTGCGATAGCGGCTTCGGAAACCTCGCGGCGCGGCAGCTCGACCGACGGGGGTTTCATGTAATCGCCGCGTGTCTCACCGAACCTGGTGCCTCCAGACTGCGTGCGGCGGCCTCCCCCAGACTGAAGACGCTTCTGCTCAATGTTACCGACAGCGCGAGCATCAAGAGCGCGCTGGAGCGCGTGCGCAGCGAGACCGGGGAGAGAGGTCTGTGGGGTTTAGTCAACAATGCCGGCATCTCGGTCCCCATCGGCCCCACAGATTGGATGCAGCCGGAGGACTTTACGAAGGTTCTGGACGTAAACCTCATGGGCCTCATCGAGGTGACGCTGAACTTCCTTCCTCTGCTGAAGAAGGCCCGGGGTCGGGTGGTGAACGTGGCCAGCATACTGGGCAGACTCTCAATCATCGGGGGAGGATATTGTCTCTCTAAATGGGGTGTGGAGGCGTTCTCTGATAGCTTGAGGAGGGATATGATGCACTTTGGAGTGAAGGTAAGTATCATTGAACCAGGCTTCTTTAAGACACAAGTAACAGATTTGAGCCTCATTGAAGATGATCTGAAGAAACGGTGGAACAACCTCCCAGCAGAGGTCAGGAGAGCCTACGGAGACTCATACCTGCAGGACTATATAAAGTTGCAGGCGTTCTCCATGAGGATTCTGGCAAGTAGTGACCTTTCCAAAGTGACATCATGCATGCAGCACGCTCTTTCAGCACGCTATCCCCGAACACGCTACGCCGCAGGCTGGGACGCCAAGTTTCTCTGGATTCCCCTCTCGTACCTGCCTACTTGTATAGCAGACGTCATCGTGAACCTTCTAATGCCTTCTCCAAAGGAGACCTGAACGTCGCTCCAGAGATTTACTGAACAGGCCACTACAGATCGCATGTTGCAGCTCAACAGATCAAGACAGTCATCTTCTTAGTGAATTAATAATATGAAATATTCAAAGAGGTATTTTTGTCTTTGAAACTGTGATTGCTGTATGCAACATAAATGCAATCAAATAAA

Function

symbol description
rdh1 Enables NAD-retinol dehydrogenase activity. Acts upstream of or within several processes, including embryonic pectoral fin morphogenesis; pancreas development; and retinoid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb and liver. Orthologous to human HSD17B6 (hydroxysteroid 17-beta dehydrogenase 6).

NR:

description
retinol dehydrogenase 5

GO:

id name namespace
GO:0031018 endocrine pancreas development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_15975897_15978506.mRNA True 1148 mRNA 0.53 4 15975730 15978506

Neighbor

gene id symbol gene type direction distance location
CI01000009_15847186_15853675 CCDC89 coding downstream 122055 15846918 ~ 15853675 (-)
CI01000009_15802365_15836680 COL28A1A coding downstream 139046 15802348 ~ 15836684 (-)
CI01000009_15791178_15798430 BBS5.L, BBS5 coding downstream 177300 15790849 ~ 15798430 (-)
CI01000009_15784118_15789896 KLHL41, KLHL41A coding downstream 185834 15784080 ~ 15789896 (-)
CI01000009_15726357_15736168 PHGDH coding downstream 239562 15726145 ~ 15736168 (-)
CI01000009_15981692_15985027 DHRS9 coding upstream 3179 15981685 ~ 15985027 (-)
G60479 NA non-coding downstream 171939 15802887 ~ 15803791 (-)
G60367 NA non-coding downstream 176771 15781299 ~ 15798959 (-)
G60472 NA non-coding downstream 224736 15750698 ~ 15750994 (-)
G60376 NA non-coding downstream 229244 15745468 ~ 15746486 (-)
G60469 NA non-coding downstream 256569 15718562 ~ 15719161 (-)
CI01000009_15654061_15662554 ARPC2 other downstream 319761 15653760 ~ 15663026 (-)
CI01000009_15318811_15390382 TNS1 other downstream 532683 15318811 ~ 15390382 (-)
G59941 NA other downstream 843227 15132104 ~ 15132503 (-)
G59811 NA other downstream 1088266 14862397 ~ 14887464 (-)
G59490 NA other downstream 1937857 14033564 ~ 14037873 (-)

Expression


Co-expression Network