nlgn3 (nlgn3,nlgn3a,LOC107689138,LOC107663109)


Basic Information

Item Value
gene id nlgn3
gene name nlgn3,nlgn3a,LOC107689138,LOC107663109
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 18424758 ~ 18636999 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228428.3
GCGCAGCGCGCGACCGCCGGCACCGCGAGCGCGAGCATGAAGCGCGAGGGAGCGAGCGTTCGGAGGAAGACGgaggagaaacggctgaaaatGTGAGCGGAGGGAGCGGAGCGGAGGAGGACGCAGCGCGGATCGGTACGGGGGTTTTAACGGGGCGGCTCGCGGAGGCGCGTGGGATTATTATCGCGGTTGTTATAGAGCGCTGTGCTTTTTTTCCCCagtgtttttttggttgttttttgggGGAGAATATCTCTGGAATGAAGGGATTGGTAGTTCGTTTGAGCAGagagaagATCTGACGGGAGAAGCGGAACTGGACAGCGGTGAATGAGGACCGTCTGGACGGACGGACAGCAGTGGAATAGAGGAATAATTTAAAGCAGCGTTTGGATTTTTTTGAGGGTTTTTTGTTGGCTTTTTTTGTGGCTCCTTTTTTCCGCGTGTCCGCGTGACCCCTCCCTCCGATGAGGCCGACTACGAGAACGAGAAGAGTCGAGGGACTGAAGGACGGAAGAGACGTGTGCTGAGTGAGTGTAAAAGagcgtgtgagagagtgtgtgtgtgagtgttggcGTCTCTCTGGGCGTTTTTTTTTACGGACCATGTGGCCCTCGGCGCGGAGGGGCCGGATGTTGCCAGGCCTCAGCCGGGGCTCGTCTCTGTGGATACGGATGTTTTTTTGCTGGGCGTCGGCGCTCTGGGTCCGGGGCAGAGTTATTACCCCACGGTGAACACGCACTACGGGAAGCTCCGCGGCGTGAGGGTCCCGCTGCCCAGCGAGATCCTGGGACCCGTGGACCAGTACCTGGGCGTGCCCTACGCGGCTCCGCCCACCGGCGAGAAGCGCTTCCTGCCCCCCGAGGCGCCCTCGTCGTGGTCGGGGATCAAGAACGCCACGCACTTCGCGCCCGTGTGCCCGCAAAACATCCACAACGCCGTGCCGGAAATCATGATGCCTATCTGGTTCACTTTTAACCTGGATATAGTCGCCACGTACATACAGGACCAAAACGAGGATTGTTTGTACCTAAACATCTACGTTCCGACCGAGGACGtCAAAAGAATATCCAAGGAATGTGCCAGAAAACCCAACAAGAAAATATGTAGGAAAGGAGGTGCCCACACCAAAAAACAGGGCGAGGATTTAGCCGATAACGACGGCGATGAAGATGAAGACATACGAGACACCGGCGCCAAACCTGTGATGGTGTACATTCATGGAGGCTCGTACATGGAGGGCACCGGGAACATGATCGACGGCAGTGTGCTCGCCAGCTACGGCAACGTCATCGTCATCACCCTCAACTTCCGGGTCGGCGTTTTAGGGTTCCTGAGTACAGGAGACCAGGCTGCTAAAGGGAATTACGGACTGCTAGATCAGATCCAGGCTCTGCGCTGGATCAGCGAAAATATCGGATACTTCGGCGGCGACTCCAACCGGATCACCGTGTTCGGATCAGGCATCGGAGCTTCCTGCGTCAGTCTGCTCACCCTCTCCCACCATTCAGAAGGCCTCTTCCATCGTGCCATCATACAGAGCGGTTCAGCGCTTTCCAGCTGGGCCGTCAACTACCAGCCAGTGAAGTACACCCGTCTGTTAGCCGAGAAGGTGGGCTGTAACGTCCTGGACACCATGGACATGGTGCACTGCCTACGGAAGAAGAATGCCCGTGAGCTGGTGGAGCAGGACATCCAGCCAGCACGCTACCACGTCGCGTTCGGTCCGGTCATCGACGGCGACGTGATCCCGGACGACCCTGAAATCTTGATGGAGCAGGGCGAGTTTCTCAACTACGATATAATGCTAGGAGTCAACCAGGGAGAGGGTCTGCGCTTCGTGGAGAACGTGGTGGACTCTGAGGATGGCGTCTCAGGCAACGACTTCGACTTCTCCGTCTCGGACTTCGTGGACAGCCTGTACGGCTACCCGGAGGGCAAGGACACCTTGCGGGAGACCATCAAGTTCATGTACACGGATTGGGCTGACAGGGACAACCCTGAGACACGGCGCAAGACACTGGTAGCTCTCTTTACTGATCACCAGTGGGTGGAGCCATCGGTGGTAACAGCAGACCTGCATGCCCGCTATGGATCTCCCACGTACTTCTACGCCTTCTACCACCACTGCCAGAGCCTGATGAAGCCCGCCTGGTCCGATGCTGCCCATGGAGACGAGGTGCCCTACGTCTTCGGCATCCCCATGATTGGCCCCACCGACCTGTTCCCCTGCAACTTCTCCAAGAACGACATCATGCTCAGCGCTGTGGTCATGACCTACTGGACTAACTTCGCCAAGACAGGagatcCCAACAAGCCGGTTCCTCAGGACACCAAGTTCATCCACACGAAGGCAAACCGCTTTGAGGAGGTGGCCTGGTCCAAATACAATCCTCAGGACCAGCTGTACCTCCACATCGGGCTCAAACCCAGAGTGCGAGATCACTACCGTGCCACCAAGGTAGCCTTCTGGAAGCACCTCGTTCCTCACCTGTACAACCTGCACGACATGTTCCACTACACCTCCACTACCACCAAAGTGCCGCCGCCGGAGACCACGCAGAACTCGCTGTCCACCAAGCGGCCCAACGGCAAGGCGTGGCCCTTCAACACCAAGCGTCCGCCCATGTCTCCGGCATACAACAGCGAGAGCGGTAAGGAGCAGTGGAACGGCGGCGAGGAGCCCGGGCCGCTGGTGGTGGAGAATCCTCGTGACTACTCCACCGAGCTTAGTGTCACCATCGCCGTGGGCGCCTCGCTCCTGTTCCTCAACGTTCTGGCCTTCGCCGCCCTCTactaccgtaaagacaagagaCGGCAGGAGCAGCAGCCCCAGTCCAGTCCTCCCCGAGCCTCCAACACCGCCTCATCCAATGACGTGGGGCGCCACGCTCCCGAGGAGGAGATCATGTCCCTTCAGGTCAACCAGTCGCATCACGAGTGTGACGCCGGACCCGCCGGAGAAGCTCTGCGATTGGCCTCGCTCCCAGACTACGCCCTGACGCTGCGGCGCTCGCCCGACGACATCCCGCTCATGACGCCCAACACCATCACCATGATCCCCAACTCGCTGGTGGGCATGCCCAACCTCCACCCGTACAACACCTTCACCGCCGGCTTCAACTCCACCGGCCTGCCCCACTCCCACTCCACCACGCGTGTATAGCTTTAAGGAGACCCGCCAACACGTCGGGGGGGTGTGGGGGTGGGAAAAGGGGGTGGATTTATAGGATTATACACAGGTTGGATTTGCAGAGAAGCCTAAAAGAGAACTGAAATCTGAACAGACTTGAATTAGGAGTCTCTGCCACGTTCTCCAGATGTCTCCAGACGTTCTCAAGACATTCTCCAGACGTTCTCGAGACGTTCTCGAGACGTCGAGTGGTTGCAGACCTGCCAAACCGTGAACTTCTCCATCTCCCCCAGCAGAGGGACGAGCGAGCATTTCAAgcagtatttttttctaataatcattttaaaaacagaaagaggGGAGGGACTGGGACTGGGACTAAGGGGAGAGGGGACGCCTTTATAAGAAGACTGGGGGGGAGATATATCAACAACGTTTTTCTTGaataattaacaaacaaacaaacggaaaaaaaaaacacaacgaaagaaaagtgctttttatttcCCATTTCAGTCTCTAGTGGGAAACACGTTTCGAAAAACAATGAGATGCCTCTGAGATGACGTTTGCGTACCACTTGTGTtgcttttgttattattttcttttcgaTGCCTTACTGAGAGCTTCAGATTTGTTTTTCTACTCTTTATCTTTATCGTTATCTTTTTCGCTGAGGTGGTGAGTCCAGTTCCGGAACCTGTTCGCCGTAACGACTGGATTACCGGAAAAACACGAAACGCGAGGGACGTACTCAGAAAACTGAGAATCGAAGAAGCAATCTGGACCAACTCCTTATTTTTTCAGTTGCGTTTCCTCACTCAcggtttactgtgttttattttttctgatttcAGTGCTAATTATACGTCTGACTCTCTGCCACGAGACAAGACTGCAGATACAACAGACTTTACTGTGATTGTTTTGTTAAGAGAAAAAAGTGCATCTTTTTCAACAGATTTATCTATCGCCTACTGGATCTGACCTTCATCAAATGCACATGTAAACACAACGCTCAGAAAACACCTGTtcgtttgtgtgtgagtgtgtgtgtgtgtgtgtgtgagtgtgcgagagagagaaagtgtgtgaatAGGTATGCTTGTTGTGAGAATACCTGAAAATGAGCATTTGTGTGCTTGTGTAAGAGTGCAAATGTGAAAGCATGAGTGTGTAAGAATGCGAGTGTGCAAGAATGCgagtgtgcgagagagtgagtgtgtaagagcTCGAGTGTGTGAGAATGCAAGTCTGCAAAAGATTAAGTGTGCAAGAATGCGAGTGTGCGAGAGCGTGAGTGTGCGAGAGCACGAGTGTGCGTGCATGTGAGTTTG
>XM_007228429.3
CGCAGCGCGCGACCGCCGGCACCGCGAGCGCGAGCATGAAGCGCGAGGGAGCGAGCGTTCGGAGGAAGACGgaggagaaacggctgaaaatGTGAGCGGAGGGAGCGGAGCGGAGGAGGACGCAGCGCGGATCGGTACGGGGGTTTTAACGGGGCGGCTCGCGGAGGCGCGTGGGATTATTATCGCGGTTGTTATAGAGCGCTGTGCTTTTTTTCCCCagtgtttttttggttgttttttgggGGAGAATATCTCTGGAATGAAGGGATTGGTAGTTCGTTTGAGCAGagagaagATCTGACGGGAGAAGCGGAACTGGACAGCGGTGAATGAGGACCGTCTGGACGGACGGACAGCAGTGGAATAGAGGAATAATTTAAAGCAGCGTTTGGATTTTTTTGAGGGTTTTTTGTTGGCTTTTTTTGTGGCTCCTTTTTTCCGCGTGTCCGCGTGACCCCTCCCTCCGATGAGGCCGACTACGAGAACGAGAAGAGTCGAGGGACTGAAGGACGGAAGAGACGTGTGCTGAGTGAGTGTAAAAGagcgtgtgagagagtgtgtgtgtgagtgttggcGTCTCTCTGGGCGTTTTTTTTTACGGACCATGTGGCCCTCGGCGCGGAGGGGCCGGATGTTGCCAGGCCTCAGCCGGGGCTCGTCTCTGTGGATACGGATGTTTTTTTGCTGGGCGTCGGCGCTCTGGGTCCGGGGCAGAGTTATTACCCCACGGTGAACACGCACTACGGGAAGCTCCGCGGCGTGAGGGTCCCGCTGCCCAGCGAGATCCTGGGACCCGTGGACCAGTACCTGGGCGTGCCCTACGCGGCTCCGCCCACCGGCGAGAAGCGCTTCCTGCCCCCCGAGGCGCCCTCGTCGTGGTCGGGGATCAAGAACGCCACGCACTTCGCGCCCGTGTGCCCGCAAAACATCCACAACGCCGTGCCGGAAATCATGATGCCTATCTGGTTCACTTTTAACCTGGATATAGTCGCCACGTACATACAGGACCAAAACGAGGATTGTTTGTACCTAAACATCTACGTTCCGACCGAGGACGACATACGAGACACCGGCGCCAAACCTGTGATGGTGTACATTCATGGAGGCTCGTACATGGAGGGCACCGGGAACATGATCGACGGCAGTGTGCTCGCCAGCTACGGCAACGTCATCGTCATCACCCTCAACTTCCGGGTCGGCGTTTTAGGGTTCCTGAGTACAGGAGACCAGGCTGCTAAAGGGAATTACGGACTGCTAGATCAGATCCAGGCTCTGCGCTGGATCAGCGAAAATATCGGATACTTCGGCGGCGACTCCAACCGGATCACCGTGTTCGGATCAGGCATCGGAGCTTCCTGCGTCAGTCTGCTCACCCTCTCCCACCATTCAGAAGGCCTCTTCCATCGTGCCATCATACAGAGCGGTTCAGCGCTTTCCAGCTGGGCCGTCAACTACCAGCCAGTGAAGTACACCCGTCTGTTAGCCGAGAAGGTGGGCTGTAACGTCCTGGACACCATGGACATGGTGCACTGCCTACGGAAGAAGAATGCCCGTGAGCTGGTGGAGCAGGACATCCAGCCAGCACGCTACCACGTCGCGTTCGGTCCGGTCATCGACGGCGACGTGATCCCGGACGACCCTGAAATCTTGATGGAGCAGGGCGAGTTTCTCAACTACGATATAATGCTAGGAGTCAACCAGGGAGAGGGTCTGCGCTTCGTGGAGAACGTGGTGGACTCTGAGGATGGCGTCTCAGGCAACGACTTCGACTTCTCCGTCTCGGACTTCGTGGACAGCCTGTACGGCTACCCGGAGGGCAAGGACACCTTGCGGGAGACCATCAAGTTCATGTACACGGATTGGGCTGACAGGGACAACCCTGAGACACGGCGCAAGACACTGGTAGCTCTCTTTACTGATCACCAGTGGGTGGAGCCATCGGTGGTAACAGCAGACCTGCATGCCCGCTATGGATCTCCCACGTACTTCTACGCCTTCTACCACCACTGCCAGAGCCTGATGAAGCCCGCCTGGTCCGATGCTGCCCATGGAGACGAGGTGCCCTACGTCTTCGGCATCCCCATGATTGGCCCCACCGACCTGTTCCCCTGCAACTTCTCCAAGAACGACATCATGCTCAGCGCTGTGGTCATGACCTACTGGACTAACTTCGCCAAGACAGGagatcCCAACAAGCCGGTTCCTCAGGACACCAAGTTCATCCACACGAAGGCAAACCGCTTTGAGGAGGTGGCCTGGTCCAAATACAATCCTCAGGACCAGCTGTACCTCCACATCGGGCTCAAACCCAGAGTGCGAGATCACTACCGTGCCACCAAGGTAGCCTTCTGGAAGCACCTCGTTCCTCACCTGTACAACCTGCACGACATGTTCCACTACACCTCCACTACCACCAAAGTGCCGCCGCCGGAGACCACGCAGAACTCGCTGTCCACCAAGCGGCCCAACGGCAAGGCGTGGCCCTTCAACACCAAGCGTCCGCCCATGTCTCCGGCATACAACAGCGAGAGCGGTAAGGAGCAGTGGAACGGCGGCGAGGAGCCCGGGCCGCTGGTGGTGGAGAATCCTCGTGACTACTCCACCGAGCTTAGTGTCACCATCGCCGTGGGCGCCTCGCTCCTGTTCCTCAACGTTCTGGCCTTCGCCGCCCTCTactaccgtaaagacaagagaCGGCAGGAGCAGCAGCCCCAGTCCAGTCCTCCCCGAGCCTCCAACACCGCCTCATCCAATGACGTGGGGCGCCACGCTCCCGAGGAGGAGATCATGTCCCTTCAGGTCAACCAGTCGCATCACGAGTGTGACGCCGGACCCGCCGGAGAAGCTCTGCGATTGGCCTCGCTCCCAGACTACGCCCTGACGCTGCGGCGCTCGCCCGACGACATCCCGCTCATGACGCCCAACACCATCACCATGATCCCCAACTCGCTGGTGGGCATGCCCAACCTCCACCCGTACAACACCTTCACCGCCGGCTTCAACTCCACCGGCCTGCCCCACTCCCACTCCACCACGCGTGTATAGCTTTAAGGAGACCCGCCAACACGTCGGGGGGGTGTGGGGGTGGGAAAAGGGGGTGGATTTATAGGATTATACACAGGTTGGATTTGCAGAGAAGCCTAAAAGAGAACTGAAATCTGAACAGACTTGAATTAGGAGTCTCTGCCACGTTCTCCAGATGTCTCCAGACGTTCTCAAGACATTCTCCAGACGTTCTCGAGACGTTCTCGAGACGTCGAGTGGTTGCAGACCTGCCAAACCGTGAACTTCTCCATCTCCCCCAGCAGAGGGACGAGCGAGCATTTCAAgcagtatttttttctaataatcattttaaaaacagaaagaggGGAGGGACTGGGACTGGGACTAAGGGGAGAGGGGACGCCTTTATAAGAAGACTGGGGGGGAGATATATCAACAACGTTTTTCTTGaataattaacaaacaaacaaacggaaaaaaaaaacacaacgaaagaaaagtgctttttatttcCCATTTCAGTCTCTAGTGGGAAACACGTTTCGAAAAACAATGAGATGCCTCTGAGATGACGTTTGCGTACCACTTGTGTtgcttttgttattattttcttttcgaTGCCTTACTGAGAGCTTCAGATTTGTTTTTCTACTCTTTATCTTTATCGTTATCTTTTTCGCTGAGGTGGTGAGTCCAGTTCCGGAACCTGTTCGCCGTAACGACTGGATTACCGGAAAAACACGAAACGCGAGGGACGTACTCAGAAAACTGAGAATCGAAGAAGCAATCTGGACCAACTCCTTATTTTTTCAGTTGCGTTTCCTCACTCAcggtttactgtgttttattttttctgatttcAGTGCTAATTATACGTCTGACTCTCTGCCACGAGACAAGACTGCAGATACAACAGACTTTACTGTGATTGTTTTGTTAAGAGAAAAAAGTGCATCTTTTTCAACAGATTTATCTATCGCCTACTGGATCTGACCTTCATCAAATGCACATGTAAACACAACGCTCAGAAAACACCTGTtcgtttgtgtgtgagtgtgtgtgtgtgtgtgtgtgagtgtgcgagagagagaaagtgtgtgaatAGGTATGCTTGTTGTGAGAATACCTGAAAATGAGCATTTGTGTGCTTGTGTAAGAGTGCAAATGTGAAAGCATGAGTGTGTAAGAATGCGAGTGTGCAAGAATGCgagtgtgcgagagagtgagtgtgtaagagcTCGAGTGTGTGAGAATGCAAGTCTGCAAAAGATTAAGTGTGCAAGAATGCGAGTGTGCGAGAGCGTGAGTGTGCGAGAGCACGAGTGTGCGTGCATGTGAGTTTG

Function

symbol description
nlgn3a Predicted to enable neurexin family protein binding activity and signaling receptor activity. Predicted to be involved in several processes, including neuron cell-cell adhesion; synapse assembly; and synaptic vesicle endocytosis. Predicted to act upstream of or within cell adhesion and synapse organization. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cranial ganglion; eye; gonad; and spinal cord. Human ortholog(s) of this gene implicated in Asperger syndrome and autistic disorder. Orthologous to human NLGN3 (neuroligin 3).
nlgn3 Enables scaffold protein binding activity. Involved in several processes, including learning; social behavior; and vocalization behavior. Located in cell surface and excitatory synapse. Implicated in Asperger syndrome and autistic disorder.

NR:

description
PREDICTED: neuroligin-3 isoform X1

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K07378 NLGN; neuroligin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228428.3 True 4470 mRNA 0.54 8 18424758 18636999
XM_007228429.3 False 4349 mRNA 0.54 6 18424758 18636998

Neighbor

gene id symbol gene type direction distance location
LOC103026001 NA coding downstream 39706 18379794 ~ 18385052 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding downstream 54734 18356989 ~ 18370024 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding downstream 81755 18337692 ~ 18343003 (-)
LOC103028142 cetn2,LOC108436166,LOC102228171 coding downstream 141859 18280633 ~ 18282899 (-)
LOC103044938 NA coding downstream 215872 18191791 ~ 18208886 (-)
fgf16 fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175 coding upstream 621599 19258598 ~ 19268334 (-)
LOC103038011 uprt,LOC108440089,LOC108443770 coding upstream 713902 19350901 ~ 19359251 (-)
LOC103041563 LOC108440096,LOC103359160 coding upstream 939498 19576497 ~ 19584235 (-)
LOC103021299 NA coding upstream 957305 19594304 ~ 19600998 (-)
LOC103041262 LOC108440093 coding upstream 969026 19606025 ~ 19623243 (-)
G206467 NA non-coding downstream 18013 18406536 ~ 18406745 (-)
G206466 NA non-coding downstream 23845 18400693 ~ 18400913 (-)
G206462 NA non-coding downstream 48520 18376037 ~ 18376238 (-)
G206457 NA non-coding downstream 71347 18351062 ~ 18353411 (-)
G206460 NA non-coding downstream 74967 18348755 ~ 18349791 (-)
G206569 NA non-coding upstream 169440 18806439 ~ 18806680 (-)
G206570 NA non-coding upstream 175987 18812986 ~ 18813304 (-)
G206583 NA non-coding upstream 286816 18923815 ~ 19087671 (-)
G206584 LOC107566009,LOC107568987,LOC107689141 non-coding upstream 334520 18971519 ~ 18985721 (-)
G206585 NA non-coding upstream 376236 19013235 ~ 19021856 (-)
LOC111195732 NA other downstream 382819 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 572567 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 1123765 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 2059111 16203937 ~ 16365647 (-)
G205670 NA other downstream 2592664 15831650 ~ 15832094 (-)
G206575 NA other upstream 201370 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 400695 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 1288032 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 1320478 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 1470098 20107097 ~ 20274905 (-)

Expression


Co-expression Network