LOC103026001


Basic Information

Item Value
gene id LOC103026001
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 18379794 ~ 18385052 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228430.2
TCTCTTTAAAGCTGTGAGGGAGTTTAAATGTTCCTCCCTCTGAAACTCAGCTCAGACGGAGCTCctgcagcaggaggaggaggaggaggaggaggaggaggaggaggtgcagCGAGGAGAGAATGGGTTCAGGATCTGGGAAATATGAACCTGGCGTGTCTGTTACAGAGGGTGCTTCTGGTGGCATCTGTCAGGCAGATCATATGCCACTCGCTGCCCTTCTCGACACCGGAGGAGCAGGTGGAGGGAATTAAGATAGGCTCTCTGAGTGGAGAATACTCCCCTCCGTACCAGCTGCTGGGTGGAGGATATCTGAGAGTGGACGAGGAAACGGGGGACTTGTTCACCACCGAGAAGAAAATTGACCGCGAGGCCTTGTGTCCATCACAGGAGAAGGACAGGGACTGTACCATCTCAGACGATGCCCTGGTGGGTCCTGATCAGGAGGTGGTGAAGATCACTGTGGTAGTGGAGGATATTAATGACAATGCTCCTTATTTTGAAACTGATGAAATTCACTTAAAAATTCCTGAAGATGCAGCCGTGGGGACAAGGCTCCTATTGGACGACGAAGCTCGGGATGACGACGTTGGCAGCAATGGAGAGATAAGCTACCATTTAGAAGAAGCTGAAGGAGTTCTTCTAAGTTTCTTCAGCGTGGCTCTCGACAGATCTGCTCTAGAACTGGTCGTAGAAAAGGAGTTGGACCGGGAAGCTCAAGACGAGCACCGCTTGCTTCTCGTCGCTGTGGACGGCGGCGTCTCTCCGTCACTCAGCGCTACGGTGTCTCTCATCGTctcagtgctggatgttaacGATCACTGCCCACAGTTCAGCTCTGATCATCCTCAGACAGCTACAGTGCCAGCAGGAGCATCCCGAGGAACAGCAGTCTGCCAGGTTCAGGCCACAGACCGTGACCTCGGCCCCAACGCCCAGATAAGCTACTCCTTCAACCCTCAAGTATCTGAAAAGGCCAGAGCCCTCTTCCGCCTAGATCGAGTCACAGGTGAAATCAGCTTAGCTGTGGATGTGAAGAAGCTACAATCCTCAGAGGAACATCTGCTGAAAGTTGTGGCAGAAAGCCCACACTGCCCTGCGGCACTTACGCAGGTAACCGTATACCTGCAACCGGTGGCAAACCTGGAGCCCTCCATCGAGATCAAGTTTGTGGCAGAGTATAAAAATCAAACAATAGTGCTACGAGAGAACGAGCCCCCGACTGTTTTGGCCCTTTTGGAGCTAAGAGACACCTCAagcattcaagcagttctgtcCTTAGAGGCAGACAGCGTGCCATTCACTCTGAAAGAGCAAGCAGGCAACTATCTGCTTTCAACATCAAAGCCGCTAGACTTTGAACTGTGCAGCGACTATCACGTTACTGTCGTTATAAGCGAAGCCCAGGGCACACAAATCCGTGGAAGGAAAGTGATCAAAGTGGCGGTTGAAGATGTGAACGATAATGCCCCACAGTTCCAGCAGCTTCACTATCAGGCGGAGATAGAGGAGAACAATAAACCCGGCGTGTCTCTGATACAAGTCAGGGCAACCGATGCAGACAGCCGTCTCAACGGCGAAGTGTCGTACCGGCTGATTCAGTCTCCTCACCTCTTTAATATTGATGAAGCGACGGGCGTGCTGTCTGCATCAAAGCCtttggacagagagagacagagtgcgTATGTCCTCACGGTTCTTGCCAAGGATCAGGGCTCCCCGTCTCTGGAGGCCTTGGTGTCCGTGTCCGTAAATGTGCTGGACCTGAACGACAACCAGCCCACCTTCCTCAATCCACACTTCGTCTTCTTCGTCTCTGAGAGCATTCCACTTCTAGCTCAGGTGGGGAAGATTGGAGTGATGGATGCTGATGATGGAGAGAACGGGAAAGTGGTAGACGTGAGAGTTCTGAACAAGAACGTCCCCTTCGCCGTGGACGTCTCTCAACTGTCACTTCGATGCACTGCAGAAGTGGACCGGGAAAAGCAGGACCGCTATGAGTTCCTTTTGCTGGCGACGGATGGTGGCAGTCCTCCACGCTCCTCAACAACTTCGGTGACTGTTTTCGTGGAGGACGTCAATGACAACTGTCCCCAAGTCATCCTGCCCAGCAGCAACCTGTCCTGTTTCACCGTGTCCCCCAGCACCAGCGCGGGAAGCACCATCACGAAGATCTACGCCGTTGACTCGGACTCGGGTATGAACTCAGACATCACCTACCAGATCGTAGGCAGGCAGCCGGCCTGGCCGAGGCTGTTCGAGATCGACCGCCGTTCGGGGAACATCACGCTGGTGGGGCGACTGGCGGGGAGCGACGAGGGAATGCACCACCTCTTCATCGTAGTGAGCGATGGAGGTAAACCAGCTCCTCTCAACACCACAGTATGGATCAACCTGCTGGTCAATGAGACGCTGGAGCAGTGCCACATCACCAACATTCCTCAGTACCTGTCCCAAACCTCAGAAGCACCAGTGCAGCCGCCTCAAGAACCCGTCAACGAGCCGGTGCAGCAGTGCACGGAGCCGCCGTGGTTCATCCTGCTCTGTGGTCTGGGGATGATGGTGTTCTCCGTATGCATGTTTCTGGCCGCCACTGCAATCTGCCTACGACAAAAACAGCTGATGCAGCAAAGAACAAACAGTAGAGAAAACCATGAACTCAAGCTGTTAAGACTACAGAAATAAActttcttaaaaaaactgtatCATATCAAGGATGTGCTGAACGTTCTGCATGTTTAATATGTTATATAGAtagtaaggtaaaaaaaaaagggagtgACACAAGTTTGTATCTTGTGAAACTGCATTGTACTATGTATCTACTATGTATCtgggctctggaaaaaaatgaagagagcacttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattcaatataaaaagaggcagtttggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtaaaatcaaagaaactcataatttttaagtgctctcttttttttccagagctgtatttgtagaAATCAGTACTTGCATCACAtcaattataatttttatgttttatttcattttgtttttaccaGCAAAACACTAGTGTTACATTTCATAAAAGCTATGAAAAACtgattgtaattatttttttaataaaaatgacaaaagaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228430.2 True 3263 mRNA 0.49 2 18379794 18385052

Neighbor

gene id symbol gene type direction distance location
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding downstream 9770 18356989 ~ 18370024 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding downstream 36791 18337692 ~ 18343003 (-)
LOC103028142 cetn2,LOC108436166,LOC102228171 coding downstream 96895 18280633 ~ 18282899 (-)
LOC103044938 NA coding downstream 170908 18191791 ~ 18208886 (-)
slbp NA coding downstream 199272 18176707 ~ 18180522 (-)
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding upstream 39706 18424758 ~ 18636999 (-)
fgf16 fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175 coding upstream 873546 19258598 ~ 19268334 (-)
LOC103038011 uprt,LOC108440089,LOC108443770 coding upstream 965849 19350901 ~ 19359251 (-)
LOC103041563 LOC108440096,LOC103359160 coding upstream 1191445 19576497 ~ 19584235 (-)
LOC103021299 NA coding upstream 1209252 19594304 ~ 19600998 (-)
G206462 NA non-coding downstream 3556 18376037 ~ 18376238 (-)
G206457 NA non-coding downstream 26383 18351062 ~ 18353411 (-)
G206460 NA non-coding downstream 30003 18348755 ~ 18349791 (-)
G206446 nsdhl non-coding downstream 76975 18288975 ~ 18302819 (-)
G206444 nsdhl non-coding downstream 93534 18283893 ~ 18286260 (-)
G206466 NA non-coding upstream 15641 18400693 ~ 18400913 (-)
G206467 NA non-coding upstream 21484 18406536 ~ 18406745 (-)
G206569 NA non-coding upstream 421387 18806439 ~ 18806680 (-)
G206570 NA non-coding upstream 427934 18812986 ~ 18813304 (-)
G206583 NA non-coding upstream 538763 18923815 ~ 19087671 (-)
LOC111195732 NA other downstream 337855 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 527603 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 1078801 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 2014147 16203937 ~ 16365647 (-)
G205670 NA other downstream 2547700 15831650 ~ 15832094 (-)
G206575 NA other upstream 453317 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 652642 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 1539979 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 1572425 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 1722045 20107097 ~ 20274905 (-)

Expression


Co-expression Network