LOC103028142 (cetn2,LOC108436166,LOC102228171)


Basic Information

Item Value
gene id LOC103028142
gene name cetn2,LOC108436166,LOC102228171
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 18280633 ~ 18282899 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228438.3
GAGCGGGGAGGAGCGGGTGATGCTGAGAGCGCGGAGGGGTCGTGATGCTCAGTGATGTTGGtctgatatatttattatatctgtgtgatttatttattcggatcagtttaatctaaaataagagGATTTTACTGAATATCAGTCTGTGCTGATCTGCTGAACTCTGGTCGGTGATCTCGCGCGTGTGATGGCCACCAGCGCTAAGAGACCGTCTCTCGGAGCCGCGGCTCCCCGAAAGAAAACCAGCCCTAAACCCGAACTGACCGAGGAGATGAAGCAGGAGATCCGAGAAGCTTTCGAGCTGTTTGATACTGATGGTTCCGGTCACATCGAGGTGAAAGAGCTAAagGTGGCCATGAGAGCTCTCGGGTTCGAGCCCAAAAAggaggaaataaagaaaatgattgCAGATGTGGATAAAGACGGAACCGGCAAGATCTCCTTCAACGACTTTCTCACAATCATGACCCAGAAAATGGCTGAAAAAGATTCAAAAGAGGAAATTCTAAAGGCCTTCAGATTGTTTGATGACGATGAAACTGGAAAGATATCGTTCCGTAACTTAAAGCGAGTCGCAAAAGAGCTCGGAGAGAACCTCACCGACGAGGAGCTTCAGGAGATGATTGATGAAGCAGATCGGGACGGTGATGGAGAAGTGAACCAGCAGGAATTTCTCCGGATCATGAAGAAGACTTGTTTGTACTGAACGGGTGGAAAATTGCATTATGGGGTCCATTTAAATTAGCAGAACtttaatacttaaataattaacaaaatGAGACGTTTAGaaactttattaaaagattaaaagcaTTAA

Function

symbol description
cetn2 Predicted to enable calcium ion binding activity. Predicted to be involved in centriole replication; mitotic cell cycle; and nucleotide-excision repair. Predicted to be active in centriole and centrosome. Is expressed in pronephros. Orthologous to human CETN2 (centrin 2).

NR:

description
centrin-1

GO: NA

KEGG:

id description
K16465 CETN1; centrin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228438.3 True 817 mRNA 0.44 5 18280633 18282899

Neighbor

gene id symbol gene type direction distance location
LOC103044938 NA coding downstream 71747 18191791 ~ 18208886 (-)
slbp NA coding downstream 100111 18176707 ~ 18180522 (-)
ccdc142 NA coding downstream 104518 18165988 ~ 18176115 (-)
nkx1-1 nkx1-1,nkx1.2lb,LOC107550996,LOC107706723,LOC107679121 coding downstream 201151 18076055 ~ 18079482 (-)
ergic1 ergic1,LOC107679115,LOC107660430 coding downstream 296564 17959960 ~ 17984069 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding upstream 54793 18337692 ~ 18343003 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding upstream 74090 18356989 ~ 18370024 (-)
LOC103026001 NA coding upstream 96895 18379794 ~ 18385052 (-)
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding upstream 141859 18424758 ~ 18636999 (-)
fgf16 fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175 coding upstream 975699 19258598 ~ 19268334 (-)
G206443 NA non-coding downstream 503 18279811 ~ 18280130 (-)
G206435 acrc,LOC108268437,LOC102779592,LOC100690020 non-coding downstream 2092 18276257 ~ 18278541 (-)
G206434 NA non-coding downstream 6312 18270463 ~ 18274321 (-)
LOC103029928 NA non-coding downstream 93846 18183427 ~ 18186787 (-)
LOC111195818 NA non-coding downstream 158146 18113718 ~ 18122487 (-)
G206444 nsdhl non-coding upstream 994 18283893 ~ 18286260 (-)
G206446 nsdhl non-coding upstream 6076 18288975 ~ 18302819 (-)
G206460 NA non-coding upstream 65856 18348755 ~ 18349791 (-)
G206457 NA non-coding upstream 68163 18351062 ~ 18353411 (-)
G206462 NA non-coding upstream 93138 18376037 ~ 18376238 (-)
LOC111195732 NA other downstream 238694 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 428442 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 979640 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 1914986 16203937 ~ 16365647 (-)
G205670 NA other downstream 2448539 15831650 ~ 15832094 (-)
G206575 NA other upstream 555470 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 754795 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 1642132 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 1674578 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 1824198 20107097 ~ 20274905 (-)

Expression


Co-expression Network