fgf6 (fgf6,LOC107575219,LOC107656433,LOC107725939,LOC107658909,LOC107583988)


Basic Information

Item Value
gene id fgf6
gene name fgf6,LOC107575219,LOC107656433,LOC107725939,LOC107658909,LOC107583988
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 22394040 ~ 22400515 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228463.2
GCCCCCCCACCCCACTCTTCTCCGcgcgctctccctctctccctttgCCCCACGTCGCGCGCCCAGGAGCCGCCGCCATGCCCGCCTGCCCGCGCGAGCGAGCGAAACGAAACGAGTCGAGACGAAACGAGACGCGCGCGTCTATTTTCGGGCCTCGCTGCTCTCACCAGGCTGACCACGCGCCGCGGAGGAGGTGAACCGGAGAGAGAAGAAGACCCCCTCCCCCTTCCCCTCTCATCGGCATGTCCCGcgagaacagcagcagcagcagcacctccGTCGTCGCCGCCGCCGCCTCCTCCTCCGCGTCCGCTTTCGCTCTCGCGCTCGTGCTCCTGCTGAGCTTCGTGGTCGGCGCCGCGCGCTCGTACCCGATCAACGCGACGGCGGCTGAAGTGAGCGCGCGCGAGAGAAACGTCGTCGTAGCGGCGCTCCCGCGCGTCACCTGGGAGAGGGACTATCTGCTGGGTGTGAAGAGGGTGCGGAGGCTCTACTGCAACACGGGCATCGGGTTTCACCTGCAGGTGCTCCCGGACGGAGCGATCGGCGGCGCACACGACGAGAACCCATACAGTCTGATTGAGATCTCGACGGTAGACAGAGGAGTGGTTAGTCTCTATGGGGTGAAAAGTCAGCTGTTTGTGGCAATGAACAGAAGAGGAAGGTTATACGGAACGaGAGTCTTCCGTGATGAGTGCAAGTTCAAGGAGACATTGCTTCCAAACAACTACAATGCCTACGAGTCTTCCATATACAAGGGCTACTACATCGCCCTGAGCAAACATGGCCGCCAAAAAAGAGGCTACAAGGCCACGCCGGCTATGACTGTCACGCATTTCCTCCCTCGATTATGAGCAACACTGGCAATAACTCAttcattttgcacattttggacATTCACGCAGGTAACTTATACATACGTACATGGCAAGAGATTTACTGCAgaagaaactaaactaaacttaacgTAGTAATATTTATTCTcgttaaacaaaatatatgtatatttgggTAGCTAACTTTGTGTCTGACTTTGTGTAAATGCCATTCTTTGCTGCTTATAATTTCTATTATGGTTATATGAGGGACGAGGAGCTTTTTTTTGCCCCCCTCTCAATTTTTATGGGTGCTTGCCATAACTGGTGTGTAAACCTTACCCTGTCTTCAGAATTAACTAACATCTCCAGCTTTCAGAAGTGAAATGGATACATTTTATTACCTCACAAAGCCACTTATGGACTGAAAGTGTGCATAAAAAATGCacagtggagaaaaaaaaagaaaagaaaaagatagaaCTGTTTACTTTCATCTTTGTCTGTTCCACCATTTTGTAAAAGGGATGTGGGCGCCTGAGACTGCTGCATTCCTTTCTTGCATGGTGGTGCCTTAGCTTCCTAAACTGTGGCTTCTCTTAAACATGCATGCTAAAAAGACGTCCTACTATCAGAAACTTGAAGGTAGCTCTTCACTTCTTATAGTCTTCATACTTGGATCAGTAATCTACTGGAGAACCTGTGAATCGGCAAAGCTTTCAGAAGAAGCTGCATTGGGAGCTAAAGCTTATAAAGATCGTAATGTCCTTCACAGCGAGACACGTCGTTCGAGACTCTTGAGGGTCTTTCTGATGACTGGGAAAGGGTTAGGGtgcttttgtttgatttttttttttttagccgaGCCAGTGACTGTATTCTGTGATGTATTTGCAAAGTATTAAGACGAAGGGAAACAAGTTAATCTTGGTGTTTGAGGCACCTTATGACCCAAGATTGGCTTTTAGTGCAGTTCTAGCTTTCATGACGACAAAGAAACTGCTCATTTAATTAGGCAGTCTGGGAAACCATCAGTTACAAGGATCTTTTATGTGTCTGTTGGTAACCCTGCCATTAAGCTGCATTATTTGTGCTGCTCTATggcattaaacaaaaaaaaaacactgtcccCATAATGTCATCCGTAAATGCAGATTGTACGCTATTGTACACaaaataccttaaaataacttaaaattctGGAATATACAAACCAGTAGGTTTTTTGCAACAGACCCCCACCCAAAACAAGACCAAATAAAAGTTCACCCAACATTAAATTGAATCATTTTATTAGCTCAATAGCTGAAGTCAGGGTATTAGAATACTTATGGATAAATATCGATATATTTTTAGATGCACTCAAGCAACCTACACAATACATATCACGTGAACTACTTCTCCTTATGGTTTCGCCAAAACACTGCATGCATTAATGTTCCAGCTGAAATGGAGAAGAAATTCATTTTGTGATTTGATGCAATGTTTTGAATAATCTGATGCTAGTGCTAGTGGTTTTGCAGTGGTTCTACAGCAGCTGTGATATTCACGTTCACATGGGAAGAAGGTTTGCTAGTAAAGGAGTTTCTGCAGGGCACATGCAGGGAGTATTGCcctgctgctttctctctctttctctctctctctctctctgccagcCACCCACCTACTGCTGCAGCAGCACCCAGCAGCTCTATTGGGAACAGATCGACTTACATGGTGGTTAAAAGCCACCTGGCTTTGTCTAATTTCGCCCTCTCTTGCTTTAATGTCTCTGACAGGAGGCACTGGGTGAAGCAGCAAAAATGGTGGAGCAGAATGCCTGATTAAAGTCCTTGACAATgaattttctgtatatttgaatGGGAAATGCTTACGTATATGGTTCTTCCctcaaaatgaaaactgtaGCAGTAGTCACCTCTTGGCTGTTTATAAAAAGTGCCGGTCAAGACAGCTCTAATAGCTCAACAACTATGCTTTCTTAATTCTTTGTACCCGAAAATAGGCATGCAGTATGAttgttcttgaaaaaaaaatctaaatgattGCATTTTCATGTATGTGATTGGTCATTATAGTTTGTACTGATCACCAGTTTCCTTTTGTTCACGGACAGCACAGAACTTATCCGGCGAGGATATTGCTGGTGTTGACACTGAGATAGGAAAGGCATCTAGCATGGTTTCAGTGCACAACtctgaataatttaaaaaataaaaaagtcgtATGTAGAAGAATGGATCACTGGGCTACAGAAATGGCTATGTCTCTTGCAAGTGTTGCTGGATTTCTTGTACTGTACTCACTGTATCTGCAGCTTGGGAATGGTGCCCCCCTGTGGCGCGAGAAATCTTTGATGGTGAagggtgcatgtgtgtgtgttccagtaCGTCTGCAGGCTCTTGTAGTGTTCTCTCCCGATTTTGTATTCCTGCACTGAGGGGACTGTGCTTCCTCCAAATTCCCCTCCTCTTTTTTAACATATACCTCACCTTCTGCCTTAGTTCCGATTTGTTGAAATGATTGTAAGACGACAACTTTTCTCCAATCATTTTGtttctgaagaaaaaaagagattctaatatattaagaaaatgttctccttttatttttgtacgTATGTGCTGTGCACAGCAGTCAACTGTATTACTGAGCTGAgaataaaagtttgttttttaa

Function

symbol description
fgf6 Predicted to enable fibroblast growth factor receptor binding activity and growth factor activity. Acts upstream of or within fibroblast growth factor receptor signaling pathway and positive regulation of cell population proliferation. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Biomarker of prostate carcinoma in situ.

NR:

description
PREDICTED: fibroblast growth factor 6

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228463.2 True 3497 mRNA 0.45 3 22394040 22400515

Neighbor

gene id symbol gene type direction distance location
LOC103030564 NA coding downstream 1968 22389756 ~ 22392072 (-)
kdm7a kdm7ab,LOC108442737 coding downstream 273903 22082541 ~ 22120137 (-)
cnot1 cnot1 coding downstream 318001 22053224 ~ 22076039 (-)
LOC103032567 NA coding downstream 351655 22036431 ~ 22042385 (-)
LOC103037493 NA coding downstream 417866 21962543 ~ 21976174 (-)
LOC103030249 zgc:77158,LOC108442730,LOC107572640,LOC107732819,LOC107575189,LOC107700881,LOC107686625 coding upstream 6877 22407392 ~ 22452031 (-)
c24h12orf4 cunh12orf4,c8h12orf4,LOC107707474,LOC107700900,LOC107732788 coding upstream 59531 22460046 ~ 22477263 (-)
LOC103027701 cecr1 coding upstream 190517 22591032 ~ 22601463 (-)
LOC103027200 NA coding upstream 202111 22602626 ~ 22646944 (-)
LOC103026420 atp6v1e1,LOC107707480,LOC107701013,LOC108269194,LOC107575294,LOC107732807,LOC108442797,LOC102197685 coding upstream 275853 22676368 ~ 22683096 (-)
G207275 NA non-coding downstream 16402 22377120 ~ 22377638 (-)
G207269 NA non-coding downstream 17353 22326902 ~ 22376687 (-)
G207243 NA non-coding downstream 359393 22016600 ~ 22034647 (-)
G207242 NA non-coding downstream 381327 22000241 ~ 22012713 (-)
G207232 NA non-coding downstream 445412 21946829 ~ 21948628 (-)
G207282 NA non-coding upstream 1858 22402373 ~ 22402783 (-)
G207272 NA non-coding upstream 3765 22404280 ~ 22406529 (-)
G207315 NA non-coding upstream 182251 22582766 ~ 22583801 (-)
G207333 NA non-coding upstream 288225 22688740 ~ 22689592 (-)
G207505 LOC108441495 non-coding upstream 306919 22707434 ~ 22709445 (-)
LOC103034681 LOC108436714 other downstream 146927 21764104 ~ 22247113 (-)
LOC111195740 vma21,LOC108436707,LOC106604103 other downstream 411310 21979799 ~ 21982730 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other downstream 1611056 20677453 ~ 20782984 (-)
LOC103040850 hmgn5 other downstream 1881753 20463703 ~ 20512287 (-)
LOC103040644 LOC108443111 other downstream 2119135 20107097 ~ 20274905 (-)
LOC103035944 mical3 other upstream 484917 22885432 ~ 22956024 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other upstream 819954 23220469 ~ 23412954 (-)
dnajc24 dnajc24 other upstream 1538410 23938925 ~ 24020314 (-)
G207707 polr2c other upstream 2124219 24524734 ~ 24529067 (-)
G207772 NA other upstream 2547616 24948131 ~ 24948851 (-)

Expression


Co-expression Network