LOC103041563 (LOC108440096,LOC103359160)


Basic Information

Item Value
gene id LOC103041563
gene name LOC108440096,LOC103359160
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 19576497 ~ 19584235 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007228479.3
CGCTCCGGGATGTGACGTAACGGCGGTGTATAAAGCGGAGCGCGCGCGGTGAATCAGCGCGGTGTCGGTATGGCAGCGGCTCAGTCTGACCCCGAGTCTCTGCACATCTCCGTGGCGGTGCTCGGCATCTCCGGCGGCTCTTTGCTGCTTCTGGTGAATAACTATGGCAGCTCTTCTGCTAAACCCCTGATCCCATACACATCTCTGGGGGTCCTGCTCCTCATCATCTCAGCCCTGCTGGCTTATGCAGGAGTGCGTCGGAGTTTATCCAACAGCTTCATCTTCGTCAGTCTGTGTCTGACAGTGTCGGCTCTGTGGTGTGGCTCAGGGCTGATTTATATCCTGGAGGGCGAGGCTGTAATAGTAGAGGGGTTGAGGAATGCGCTGGTTCCAGGTCTTGCTGCGTTTACTTTAGCTCTGTTTATTATCTGTATAGTGGCGGTTCTCCAGAGAGAGGTGGTCTACTCCTTTATTGCTCTGGCTATTTGCTTGGCATGCGCCCATCAGATCGCCGGTCTGGCCGATGCAGCTTTCGGCCAGTCGGCCACCGCCGCCTGTTACCTGCTGGTGTGTTTCGTTGGCGCTTACTTCGGGAGCGGACGCTTGTTGTTCTATATCACCCGCGGTAAGCTTCAGCTTCCAGGCATGGGTCTGAAGAATAAGGTAAACTCTAAGGTAGCGCAGGGTCAGGAGGCTAACGATGTGGTTCCTGTGGGTTTGGTGATGAACTTGTTGTCGGCTAGCGTTCTGGCTTGTCCGTTGCTTGGCGTGGTTCCTCAGCTGTTCGTGGGTCACGTTCCATGGCTGTGGACAGCTGGAGTCTTCCAGTTAGGGGTGTGTGTCCTTTCCTATAGGTCTATGGACATCCTGGCTGCCACCTTCTACGGCTTCACGGCCATATTGAAGTTTTCTGAAGGGTATAGTGCGCTGGTGAAGGACTTGACACATCAAGAACCCTATTCTCCAGTACCCTTTCCTACGGTTTTCGCAATACTCTTCTTCGTGTTGGCTGTGTTTAGCGTTCAGAGAAGTTTACTCGATGTTTTCTACGGCCTTTTCTTCGTAGCGTACTGCATCGCAATCGCCGCCCAACCCAGAGGCTTTTTCCAGGGGGGAACTCAAGGTGTGGAAGCTGCCATATTTGTGGCATCCGCCATCATGCTCATGGTAACTCTCTACAACAAGGGTGCTCAAAAGAAGATACCGACAGGCGATGGTCTTCTCAAGAATCTTCTGAGCCGAGGTGGTAAATTCACCCTTCGTTCTCAAGACAAAGATCTGCATGCGCCGTATTTGGGTTACTCCAAATACGCGGATGCTGAGGTGTTAGCTCATGGCTGTAGTGTTCTGGCAGCTTTCGCCATTACCGCTAGTACAGCGGGTCAGAACCCTTTAACGGTTCTGATTTTGCCCTGGGCCGTGGTTTCAGGTGGTGTCCTCCAGTTGCTGTGTGGATCAGTGGCCTACGCTCGAGGTAAAACCCTAGAGAGCACGGCCTTCATCCTCTACGGCTTCATGTGGACGGTTTGGGGCCTGACGCGCTTCGGCGGACTCTACGGCGACGTCCGCGGCTTCCAAGTATCAGTAGGAATCATTAGCTTCATGCTTTTCAATGTTCTAGTAACGATAGGAGCCATGTTCCTCAATTTAGCTTGGTTTATCTACGCCCTCACCTTTGAGCTCATCCTCATTAGCTTCTTGCTGGACGCAGTGGACGCCCTGCCCTACGGCTACGATATTGGCGTCACCATCATCTTCGGCTTGGTTAGCTTCTACTTTTTCCTGGCCAACCTGTTCAACACCATCTTCGAGACGCCACAGCTTCCTTTTGGTGATCCATTGATCAAGTTGAGGGGATTCGGTGGAGGAAGAGACAGCTGTCCTCATCTTCCGGCGAGGAAAGCCACATCTGTGCATCAGATTGCAGACATCATGAAGAATGGAGGAATATGCGGGATGCCCACTGACACAGTCTATGTGCTGGTGGCGGCTTGCAATCGTCCAGAAGCTGTTGAGAAAGCCTATAAGGTGAAGAAGCAGGCTCAGGAACGCCCCATGTCATTATGGATCTCCTCCCTTAAGCAGTTAGAACCGGTCAGATCACAGATTAATCCAGTGCTCTGGGACTTCATGGAAGCTGCTTGGCCCTCATCAATCAGCATGGTCATTCCTAGAGCTCCGTGGATGGAATTCTTCGGTTTGGCTGATTCATCGAAATACATCGGCACGCCGCAGAGCATAGCCATCAGAATCCCAGACTGCACTGTTGCGACACACCTAATTAGCCTGGTCGGCCCTATTGCTGTTACATCAGCCAACCCGACAGGTGAGGCCGACACGACTCATCATAACCAGGTGTACGCCAAGCTGGGTGATAAGGTGAATGGCGTTCTGTGTGATGGGCCTTCACCTGAGAACATCGCCTCCACTGTGGTGGACTGTACGAAGGTGGACAGTGGCCAGATTGGCTTTTTCAGGGTTGGTCTGATACCCAAGTCAAAGGTTCTTCAGATCTTCGAGGAGATACAGATGAGGCATCGGCACGGGCAGGTGAACGAAGCTTTTGAGGGAGATTTCACAGAAACTCAGACTGAATTAACACAAATAATAAGAGATCCTGAAACAGACTCAGGCTTAAGCCAGCAAACCCCCGCGGAGTCGCTGAGCTCGCTGGAGCTCAGTCAGCACCACCATGAAGACAGTGAAGAAGAATCGCTTTAAATCAGGATGAATTCAAATCAAAAACAGTAATGATAAATATGccaaatgtaaaattataactgatttaaaaacatcAAAGTCATTACGATTAAAGTGTATagtaaatctgcatctctattatttacattaaattattagcattgtaaaacactgtaatgtacataatatagtataatttaACCAAAAGCAGGCCTATATTGGCATCATGCAAAATTGGAATCAGTGTATATCAGTGTGtctgtatataaatatctatataaaaGTGTATATTAATGTCTACAATGTCTATAAacaattttaagcattttatttttaatccgAAACCACCAGTGAACCTACACAACccttatatttgtaatatttgtaaatGCTGCCAaattgtttaatacttttttttaaataacccaATCAAAAAAAGGTCCATAATGCAATAATGCGAAAATGCAATGTTGGAATCAGTGTAggatttgtatttcttttttgttgtgcACTTTAATGGCCCAGGTTTAATTTATATGTTCTGTATGTTGTacgttatttatttttacatgtatttcaTGCCTAATAAAGCTGAGAATATATTAAATTTAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108440096

GO: NA

KEGG:

id description
K07566 tsaC, rimN, SUA5; L-threonylcarbamoyladenylate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007228479.3 True 3312 mRNA 0.48 9 19576497 19584235

Neighbor

gene id symbol gene type direction distance location
LOC103038011 uprt,LOC108440089,LOC108443770 coding downstream 217246 19350901 ~ 19359251 (-)
fgf16 fgf16,LOC107654780,LOC107731802,LOC107575101,LOC107746175 coding downstream 308163 19258598 ~ 19268334 (-)
nlgn3 nlgn3,nlgn3a,LOC107689138,LOC107663109 coding downstream 939498 18424758 ~ 18636999 (-)
LOC103026001 NA coding downstream 1191445 18379794 ~ 18385052 (-)
LOC103044618 plp1,LOC107689137,LOC107554657,LOC103135636,LOC103135639,LOC108242072 coding downstream 1206473 18356989 ~ 18370024 (-)
LOC103021299 NA coding upstream 10069 19594304 ~ 19600998 (-)
LOC103041262 LOC108440093 coding upstream 21790 19606025 ~ 19623243 (-)
znf711 znf711,LOC107684921,LOC107746145,LOC107569605,LOC107674883 coding upstream 321508 19905743 ~ 19913308 (-)
LOC103047376 LOC108413285 coding upstream 330314 19914549 ~ 19932986 (-)
LOC103046360 NA coding upstream 367931 19952166 ~ 19955579 (-)
G206653 NA non-coding downstream 9953 19566212 ~ 19566544 (-)
G206634 NA non-coding downstream 60378 19514117 ~ 19516119 (-)
G206640 NA non-coding downstream 65338 19495432 ~ 19511159 (-)
G206629 abcb7 non-coding downstream 169159 19404210 ~ 19407338 (-)
G206613 NA non-coding downstream 319466 19256544 ~ 19257031 (-)
G206685 NA non-coding upstream 17364 19601599 ~ 19681210 (-)
G206763 NA non-coding upstream 230739 19814974 ~ 19851961 (-)
G206782 NA non-coding upstream 490190 20074425 ~ 20074690 (-)
G206784 NA non-coding upstream 501942 20086177 ~ 20086493 (-)
G206843 NA non-coding upstream 780679 20364914 ~ 20372471 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other downstream 448771 19037694 ~ 19127726 (-)
G206575 NA other downstream 737581 18838369 ~ 18838916 (-)
LOC111195732 NA other downstream 1534558 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 1724306 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 2275504 17259786 ~ 17300993 (-)
LOC103046671 NA other upstream 340796 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 373242 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 522862 20107097 ~ 20274905 (-)
LOC103040850 hmgn5 other upstream 879468 20463703 ~ 20512287 (-)
LOC103039395 rps6ka6,rps6kal,LOC107572332,LOC107674878,LOC102207076 other upstream 1093218 20677453 ~ 20782984 (-)

Expression


Co-expression Network