CI01000009_15992272_16002225 (ABCB11, ABCB11A)


Basic Information

Item Value
gene id CI01000009_15992272_16002225
gene name ABCB11, ABCB11A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 15992272 ~ 16002225 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_15992272_16002225.mRNA
ATGAGAGAATCGCCACTGAGAGCAGCTCAGCACAACAGGAAAGGCAGCGACAAAACAAAAGAGAAAGCTCTGACCGTTGGATTCTTTCAGCTGTTCCGCTTTGCCACATGGAAGGAAGCTCTGATGATGGTGGTGGGAAGCGTGTGCTCTCTGGTCCACGGCGCCGCGTCCCCTCTCATGCTGCTGGTGTATGGCATGATGACCAACACCTTTGTGGACTATGAGCTTGAGGTTCAGGAACTGACCAACCCGAACAAAACCTGCGTCAATAACACCATTACCTGGCTGAACGGGTCTGTGGTCGAGCGGCCGGACAACACCACCACGTACTGTGGTGTGGATATTGAGGCTGAGATGACCAAGTTTGCATTTTACTATGTTGGAATTGGAGCTGGAGTCCTTATCCTGAGTTACTTTCAGATCTCTCTCTGGGTTTCTGCTGCCGCCAGACAGATCCAGCGCATCCGGAAAATGTACTTCAGGAAGATAATGCGCATGGAGATCGGCTGGTTCGACTGCACCTCCGTCGGGGAGCTGAATACGAGAATATCTGATGACATTAACAAAATCAACAACGCTATAGCAGACCAGGTGTCCATCTTCATCGAGAGGATCTCAACATTCATATTTGGTTTCATGGTGGGATTCATTGGCGGATGGAAGCTGACGCTGGTGGTGATAGCAGCTGTGGCGACGCTGACGGGTCGTGAATTGAAGGCCTATGCTAAAGCCGGAGCGGTGGCTGATGAAGTCCTTTCCTCCATCAGAACGGTGGCCGCCTTTGGAGGAGAGCACAAAGAGGCAGAGAGGTATGACAAGAACCTCATCGAGGCCCAGGCGTGGGGTATTAAGAAGGGAGCAATCATCGGTGTGTTTCAGGGCTACCTCTGGTGCATCATATTCCTGTGTTACGCTCTAGCTTTCTGGTACGGCTCAAAACTGGTGTTTTTTGGTGTTCTCATGGGTGCCATGAATCTGGGCCAGGCCTCTCCATGTCTTGAGGCATTTGCCTCTGGTCGCGCTGCAGCTAAGAGTATATTTGACACTATTGACAGAGAACCAGAAATCGATTGCTTCTCAGAAGAAGGTCATACGTTAGACAAAGTTAAAGGTGACATTGAATTCCACAGCGTTCACTTCAACTATCCCTCCCGTCCTGAAGTAAAAATATTAGATAATTTGAATGTTGTGGTCAAAGCTGGCGAGACAACTGCATTTGTTGGACCCAGTGGATCGGGAAAGAGCACAACGATCCAACTCATCCAGAGGTTCTATGATCCAAAAGAAGGAATGGTCACCCTGGATGGTCATGACATCAGAAGCCTGAATATCCAGTGGTTGCGCTCCCTTATTGGAATAGTGGAACAGGAGCCTGTTCTGTTCGCCACTACGATCGCTGAGAACATCCGATATGGCCGACGTGGAGTCACCATGGAAGAGATTATAGAAGCCGCCAAACAGGCCAATGCTTACAACTTCATCATGGATCTTCCTCAGAAATTTGACACACTGGTCGGCGAGGGTGGTGGACAAATGAGCGGAGGGCAGAAACAGAGGATCGCCATCGCTCGAGCGTTGGTAAGGAATCCCAGAATCCTCCTATTAGACATGGCCACATCAGCGCTGGATAATGAGAGCGAGGCTATCGTACAGGAGGCCTTGGACAAG

Function

symbol description
abcb11a Predicted to enable ABC-type bile acid transporter activity and canalicular bile acid transmembrane transporter activity. Predicted to be involved in canalicular bile acid transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestine. Human ortholog(s) of this gene implicated in benign recurrent intrahepatic cholestasis 2; intrahepatic cholestasis; liver cirrhosis; and progressive familial intrahepatic cholestasis 2. Orthologous to human ABCB11 (ATP binding cassette subfamily B member 11).
abcb11 Enables ABC-type bile acid transporter activity; ABC-type xenobiotic transporter activity; and canalicular bile acid transmembrane transporter activity. Involved in several processes, including canalicular bile acid transport; drug export; and drug transmembrane transport. Located in apical plasma membrane and cell surface. Implicated in benign recurrent intrahepatic cholestasis 2; intrahepatic cholestasis; liver cirrhosis; and progressive familial intrahepatic cholestasis 2.

NR:

description
ATP-binding cassette sub-family B member 11b

GO:

id name namespace
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05664 ABCB11; ATP-binding cassette, subfamily B (MDR/TAP), member 11

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_15992272_16002225.mRNA True 1668 mRNA 0.50 13 15992272 16002225

Neighbor

gene id symbol gene type direction distance location
CI01000009_15872202_15973125 LRP2, LRP2A coding upstream 19041 15872202 ~ 15973231 (+)
CI01000009_15770057_15782295 FASTKD1 coding upstream 209845 15770057 ~ 15783049 (+)
CI01000009_15738136_15745816 CCDC173 coding upstream 246406 15738072 ~ 15745866 (+)
CI01000009_15708273_15712002 METTL5 coding upstream 280270 15706460 ~ 15712005 (+)
CI01000009_15680573_15681601 NA coding upstream 310296 15680573 ~ 15681976 (+)
G60303 NA non-coding upstream 191016 15799681 ~ 15801256 (+)
G60293 NA non-coding upstream 243159 15748520 ~ 15749113 (+)
G60286 NA non-coding upstream 294125 15697779 ~ 15698147 (+)
G60280 NA non-coding upstream 297681 15677482 ~ 15694591 (+)
G60213 NA non-coding upstream 329577 15662473 ~ 15662695 (+)
G60028 NA other upstream 616103 15352047 ~ 15376169 (+)
CI01000009_14925314_14952223 NA other upstream 1036477 14924621 ~ 14952571 (+)
CI01000009_14857765_14859526 NA other upstream 1133628 14857713 ~ 14859636 (+)

Expression


Co-expression Network