LOC103041682


Basic Information

Item Value
gene id LOC103041682
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 17311933 ~ 17319469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232885.3
GGAAATTCTGCCTCCCAGATACTCTTCATTTATCAGCTCTGCTCTGACTGAACTCAGTACTGAAGATCATCACAGACACTCAGGCTGAGATCTCTACTGTCCTGGAGATTTCAGGAGAGAGATGCTTTTTCTTGGGCTTCAGGTCCTGCTTGCCTTTTTACACACAGCAGAGGGATCCATTAAAGTGGCTGAAAGTTACTGGACTCTAAAACCAAATGAGTTGGTGGTGGATGAGGACGTGGTGAAGTACGGCAGTAAAGTCCTGGTTCCTCTGATGTGCGGGGAGATGTTTGACGGGCAGGATGTCGTGTGGAGGCGAGACAGTGGGGAGGAGCTTGAGGAACGAGGGAACAGGATACTGGTGATGGTGGAGGAGAGGCGGGGGGGCACCTACACCTGTTACAGCAGAGAGGGAACCTACCTCAACCACACGCTGGTACTGGTGCAGTGGCCCTACAGAAAGATCATAAAGGACACACCTGAGAAAGGTTTTATTCACTGTTCAACGAAAAACTACAGCGGCTCGTTTCAGTGCTCCTGGACCTGGGATGACAAAAGGGCGGGAAAAGTTGCGCTTGTTAAAGCAGTGCGAGCTCACAGTGGAGGAAACATCAGCTGCAGCCTGAACTCCAGTGGACACGGCATCACCTGCTACGATCATGAGTACTGCCCGTACTCCGAGGAGCTGGACAACATCAACCTAACCATTTACTTCAGAAGCAACTACGTGGTGGAGAGCTACAGCCAACGCTTCCAAATCTCAGATATAGTAAAGCCGGATATGGTGAAtattataaagaagaataaCACTCTGGAGCTGCAGTACCCGAACACCTGGAACGCCCCCTTCTCCTACTTCCCCCTCACCTTCCAGGTGAAAGAGATCCGCTGCCGGAAGAAAAGCGACTGTGACTGCGCCAGCCGCCAATCATCAAAGGTAAACCTGATTCAGGATCAGCACTGGCCTCTGAAGAAGGGGGTTacggtgtgtgtgagggtgcaggatgatctctgcagctccgcCTGGAGTGAATGGACGCAGTACAAATCTGCAAAAATGAGAATCAAGAAAAGAACAggaaagaacaagaaaagaagATCCCATAAAGAAGAGTAAAACTGTCCTTTCTAAACTAATGCTGGAcaccttaaaattaaatttacttaaaataataatgtccGATAACGTTTCAATCACATATTTATGTATAATGTGCTTCGGATgggtatatacagctcttgaaaagccatcaaaccaaactgaactgcttgaatttttgcaccag

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232885.3 True 1286 mRNA 0.48 8 17311933 17319469

Neighbor

gene id symbol gene type direction distance location
LOC103024939 ebf1,ebf1a coding downstream 65108 17199473 ~ 17246825 (-)
LOC103044170 ebf1,ebf1a,LOC107669108,LOC107602553 coding downstream 112535 16953824 ~ 17199398 (-)
clint1 LOC108427862 coding downstream 476434 16803521 ~ 16835499 (-)
LOC103042614 LOC106936709 coding downstream 519403 16788501 ~ 16792530 (-)
trmt12 NA coding downstream 530698 16776472 ~ 16781235 (-)
sh3tc2 sh3tc2 coding upstream 240790 17560259 ~ 17597003 (-)
LOC103035473 gabrp,LOC108427849,LOC107752068,LOC107664365 coding upstream 534203 17853672 ~ 17865149 (-)
prelid1 prelid1,prelid1a,LOC107551005,LOC107706737,LOC107660432,LOC107558055,LOC107712305 coding upstream 566823 17886292 ~ 17890574 (-)
LOC103037035 npy7r,LOC108436162,LOC108268504,LOC107660446,LOC107558042,LOC107712299 coding upstream 572399 17891868 ~ 17898561 (-)
ergic1 ergic1,LOC107679115,LOC107660430 coding upstream 640491 17959960 ~ 17984069 (-)
G206142 NA non-coding downstream 32737 17278819 ~ 17279196 (-)
G206099 NA non-coding downstream 160884 17150509 ~ 17151049 (-)
G206029 NA non-coding downstream 315474 16994519 ~ 16996459 (-)
G206018 NA non-coding downstream 380582 16930762 ~ 16931351 (-)
G206017 NA non-coding downstream 381789 16929788 ~ 16930144 (-)
G206149 NA non-coding upstream 17472 17336941 ~ 17337141 (-)
G206154 NA non-coding upstream 36644 17356113 ~ 17356466 (-)
G206164 NA non-coding upstream 101459 17420928 ~ 17421193 (-)
G206172 NA non-coding upstream 130863 17450332 ~ 17450645 (-)
G206203 NA non-coding upstream 135810 17455279 ~ 17552141 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 10940 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 946286 16203937 ~ 16365647 (-)
G205670 NA other downstream 1479839 15831650 ~ 15832094 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 1744298 15407944 ~ 15567635 (-)
G205640 NA other downstream 1766311 15543917 ~ 15545622 (-)
LOC103033759 NA other upstream 524497 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 720206 18039675 ~ 18041939 (-)
G206575 NA other upstream 1518900 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 1718225 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 2605562 19925031 ~ 19994802 (-)

Expression


Co-expression Network