LOC103042614 (LOC106936709)


Basic Information

Item Value
gene id LOC103042614
gene name LOC106936709
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 16788501 ~ 16792530 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232888.3
TAGCCAGCAGGGGGCGGAGTCACTGAGCAAAACACAACAGCTCAGTCTCTGTTAGCCCAGTAATAATAGATCATCTCCCAGTTTATTACCTTTATATTAATCAGTGTGAATAAGAGGAGCTGCCGGAGCTGCTGATTATCTGCTGGAGGAAATGAAGGATTAGCGGTTCGGTTCTGATCCAGACCCGATTTAATCAAAGGTAATGGAGTTCCCAGGTCACAGTCAGCAGCTCCTGGCAAGTCTGCGCTCTCAGCGGCTGCAGGGATTTCTGTGCGACTGCACGGTGAAGGTCGGCCCGACCCGTTTCCTGGCTCACCGCGCCGTGCTGGCGTCCTGCTCGCCGTTTTTCCACATGTTCTACTCTGAGCACCCAGTCGGGAGCACGTCCACGGTTAACGGAGGTCCAGACAGGGATACGGTCACCATTAATGGAGATATAGTGACTCCTGCTGCGTTCGGGCTTCTGCTGGATTTTATGTATGAAGGAGTTCTGCAGTTGGTCACTCATCCCCCTCCAGAAGACGTGCTCGCTGCTGCCAGCTTCCTGCACATGAACGATGTGGTCAGAGTGTGCAAGAAAAGACTGCAAGGCCGCGGATTGGCCGAGGCGGACAGCACCAGGGCCGAGGAGGCGGGAAGCGAGGCGAGTGTGCGGGGCGGCGGGTTGTCTAGTGAAGGACGGTCGTCAGATCGTGAAGCGGGAGAGAGAAGCAGCGGAATGGGGGGACTGTTGGCAGACGGCGGGCAGCAGGTAGCAGCCAGTATTTCAGGATCTAATGTATCCTTAGTACTGCCATCATTAACGCAGAGTCTTCAACCAAGCCAGCAAACATCTTCTCACATCGACACTAAAACTGAGCTAGGGATGCCCAGCCGAATCTCGCACAGCGCCAGTTTGGGCAGTCCAGATATGGCGGACACTACTCAACCAGGTATGGAATCAGCAATTTCGGCAATGAGCGATTCAGGGCCGGGAGGCTTGTACACATCGTCTCCAGGTCCAGTTAGAGCGGGAACATCAACAACGTCAGGTAGTCGGGTTGAGTCTGCACTTTCGAGCCCTTGTAGCACCACAGAACCAATTCTGACGGGCACAGAAAGTCAGCCCAGTATCTCATCTGTGACGTCGATGGCTCTGGTCTTTGCAGACGCCAATCAAGCTGGAGATTCGGCTCGTGGCAGCTCTTTAAAAGAAGCTGGCACCGTTCTGGCACGTGGCAGCTCCTCACCACATGGTGCACATGGTCAGATAACGAAAGTAACCAAGCTTAGCTCATTTGACCAAGTTCAAGTTCAGCACGGTAGCGGACAACAAAGTTTTAGTAATATTTCGTTATCAATCCAACATAGTCAGAGCCAGGCTGAAGCGAGACAAGCGGAAGCGAGACAGACTGTAGCGAGACAGACTGTAGCAATACAGTCTTCACGAAGTTTGAGCGAACAacagccgcagcagcagcagcttccgCCACCACTACAAAAGGAACGAATAAAGGAAGACGAATCGATAAAAGTCAAGGTGGAGGCCATTGTGATCTCAGATGAAGAGCTAGAAGATGACAATGATGATGACAATGATGTTGAGGAGGAGGAGACGCTTGTCCATGTCCGAGTCAATCAAAGAAATCAAAGAAGAGATGCCAGCGTAGCAGAACGTGGCGATTACGACAGTAACCACGATGTAGAAGAGATCACCAGTGCCCACCACTTTAtaccaccccacacactcctccaGCTCCCCCACGATCACCAAGAGCCCCTCTCATACCCATCTTCACCACAAGGTGGACCTAGCGCATCATCTTCTGATACAACCAGCTTCCCATCGTCCCTTTTCCAAACTGCCTCCCAGCAGTCAGAGCAGCACCAGGCCATCTACTTCGAGGAGTTCCAGGATTCTCTGGGGAATTACGTGGAAGACGTGCCCACCTGCAGCACCTGCGGAAAGACGTTCTCCTGCGCCTATACCCTGAGGCGGCACGCCATCGTGCACACGCGTGAGCGCCCGTACGAGTGCAGTTACTGTTATCGTAGTTACACACAGTCTGGGGACTTGTACCGACACATACGAAAGGCACACGACCACGACCTGCCGGTCAAACGTAGCAGAACAGACACCGACCCGCCACTCCCGTCACCGCCTCTTCCTCAGCCTCCACAGACATGAGTGGACGGATGCAGAGGCTCATCAAAACTCATGAACTCTGATAAAAACTTTCGCCaaggtttttttatttaagaaaaacaattaaatgtgTGCCCAGGTTGTTCGGACCAACGTTCTCAA

Function

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 18.3-like

GO: NA

KEGG:

id description
K10490 ZBTB3; zinc finger and BTB domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232888.3 True 2287 mRNA 0.53 2 16788501 16792530

Neighbor

gene id symbol gene type direction distance location
trmt12 NA coding downstream 7266 16776472 ~ 16781235 (-)
sytl4 sytl4 coding downstream 15194 16747192 ~ 16773307 (-)
tspan6 tspan6 coding downstream 62162 16720472 ~ 16726339 (-)
LOC103041961 LOC108427811 coding downstream 73127 16713032 ~ 16715374 (-)
trnav-uac_4 NA coding downstream 157450 16630979 ~ 16631051 (-)
clint1 LOC108427862 coding upstream 10991 16803521 ~ 16835499 (-)
LOC103044170 ebf1,ebf1a,LOC107669108,LOC107602553 coding upstream 161294 16953824 ~ 17199398 (-)
LOC103024939 ebf1,ebf1a coding upstream 406943 17199473 ~ 17246825 (-)
LOC103041682 NA coding upstream 519403 17311933 ~ 17319469 (-)
sh3tc2 sh3tc2 coding upstream 767729 17560259 ~ 17597003 (-)
G206004 NA non-coding downstream 1113 16786677 ~ 16787388 (-)
G206006 rnaseh2c non-coding downstream 3443 16782126 ~ 16785058 (-)
G206002 NA non-coding downstream 12797 16750822 ~ 16775704 (-)
G205997 NA non-coding downstream 42922 16745220 ~ 16745579 (-)
G205916 NA non-coding downstream 135223 16602400 ~ 16653278 (-)
G206007 NA non-coding upstream 526 16793056 ~ 16798716 (-)
G206000 NA non-coding upstream 9406 16801936 ~ 16802937 (-)
G206017 NA non-coding upstream 137258 16929788 ~ 16930144 (-)
G206018 NA non-coding upstream 138232 16930762 ~ 16931351 (-)
G206029 NA non-coding upstream 201989 16994519 ~ 16996459 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 422854 16203937 ~ 16365647 (-)
G205670 NA other downstream 956407 15831650 ~ 15832094 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 1220866 15407944 ~ 15567635 (-)
G205640 NA other downstream 1242879 15543917 ~ 15545622 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other downstream 2810051 13974677 ~ 13978450 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 467256 17259786 ~ 17300993 (-)
LOC103033759 NA other upstream 1051436 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 1247145 18039675 ~ 18041939 (-)
G206575 NA other upstream 2045839 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 2245164 19037694 ~ 19127726 (-)

Expression


Co-expression Network