trmt12


Basic Information

Item Value
gene id trmt12
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 16776472 ~ 16781235 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232889.3
TAGCTGAGATATGTAGCTCAGAGTTTCtatctgtttattttctgtgtttatttacctgtttTGCTTATAATCAACCAAATAAATGATGGGAATCCCGGCTCTGAGAGTTCCCCAGCGGTTCGCTCAGCTGTACAGGAAACATCTGCTGGAACAGGGGGTTCTGGACCTGCAGTATTCTGTACAGAAACACTGTAATGGATCAGTGACTTTACCAGTCCTGCCCTCCGCTGTGCCCAGTCTGGACCTGCCCTCCCTGCAGAGCCATGTGGCAGAAGATACTCACAGCTACTGTGAGATCATTCAAATACAGGCTCCTCAGCTGTCTAAAAAAGGGAAAGTGAAATCTAGTCAGCAGAGAATAAAACAGGCTCTTCAGACTCTGATGATtaataaaggagaaatctggagagCAGAACTGGATGATGATCTTCCCAGAGGATGGAGGAGGCATGGAGATCTGGTTCTGTTTGGTGAAGGATGTTTTACACAGCCGGTCTGGAGAGAGATTGGATCTGAGCTGTGGGAGGCAGTAGCTCTTGCACTGGGAGTGAAGCGTCTCGCAAAGATTAAACAGATTTCCCAGGACGGGTTCAGAACACCTGTAGTGACCATGCTGCTGGGGGACAACAGCTACGTAACACACATCGACAATCATATCAGGTATGAGTTTGACGTCACCAGGTGCATGTTCTCATTTGGAAACATCACAGAGAAGCTGAGGATCTCCTCGTTTAGCTGCGCTGGAGAGACGGTGGTTGACCTGTACGCAGGGATTGGGTACTTTACCCTGCCGTACCTGGTACACGCGGGCGCCGCCCACGTTCATGCCTGTGAGTGGAACCTGGATGCAGTAGCAGCCCTGAAGAGAAATCTGCAGCTTAATAAAGTAGCAGATCGATGCACTGTGCATCCGGGAGACAACAGACAACTCTCTCTGAGTGACCTGGCTGACCGGGTGAACCTGGGCCTGATCCCGAGCTCGGAGCAGGGCTGGCCGGTGGCGTGCCGCCTGCTGAGGAGGGACGTTGGTGGGATGCTGCACATTCACCAGAATGTGACGACGCCTCTCCgtcatcagcatcagcagcccgGGGAGACTCCTGACTCACAGAGGACATCTGTCTCTGAGGATGAGCACGAGGGAGTGATGAGCGCATGTGTAATGAGCACGAGTGACCGAGAAACGTGGGACGCCTGGGCCAGAGACACCGCAGGACGCATTGGCGCACTGTTAAAGGACATCACTTCCTGCAGCTGGAGGACCAGCATTAAACATATAGAGCATGTGAAGTCCTACGCACCTCATATAAACCACATAGTGCTGGATTTAGAGTGTAGACCaattaaatagttaataaatttaattaatagttaaataaaacagattaagTGCAGttgtctgtatctgtgtgtaaataaatagtttta

Function

NR:

description
LOW QUALITY PROTEIN: tRNA wybutosine-synthesizing protein 2 homolog

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0006810 transport biological_process
GO:0032259 methylation biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG:

id description
K07055 TRM12, TYW2; tRNA wybutosine-synthesizing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232889.3 True 1428 mRNA 0.49 7 16776472 16781235

Neighbor

gene id symbol gene type direction distance location
sytl4 sytl4 coding downstream 3165 16747192 ~ 16773307 (-)
tspan6 tspan6 coding downstream 50133 16720472 ~ 16726339 (-)
LOC103041961 LOC108427811 coding downstream 61098 16713032 ~ 16715374 (-)
trnav-uac_4 NA coding downstream 145421 16630979 ~ 16631051 (-)
trnav-aac_55 NA coding downstream 146905 16629501 ~ 16629567 (-)
LOC103042614 LOC106936709 coding upstream 7266 16788501 ~ 16792530 (-)
clint1 LOC108427862 coding upstream 22286 16803521 ~ 16835499 (-)
LOC103044170 ebf1,ebf1a,LOC107669108,LOC107602553 coding upstream 172589 16953824 ~ 17199398 (-)
LOC103024939 ebf1,ebf1a coding upstream 418238 17199473 ~ 17246825 (-)
LOC103041682 NA coding upstream 530698 17311933 ~ 17319469 (-)
G206002 NA non-coding downstream 768 16750822 ~ 16775704 (-)
G205997 NA non-coding downstream 30893 16745220 ~ 16745579 (-)
G205916 NA non-coding downstream 123194 16602400 ~ 16653278 (-)
G205883 NA non-coding downstream 244605 16531511 ~ 16531867 (-)
G205859 NA non-coding downstream 373392 16401078 ~ 16403080 (-)
G206006 rnaseh2c non-coding upstream 891 16782126 ~ 16785058 (-)
G206004 NA non-coding upstream 5442 16786677 ~ 16787388 (-)
G206007 NA non-coding upstream 11821 16793056 ~ 16798716 (-)
G206000 NA non-coding upstream 20701 16801936 ~ 16802937 (-)
G206017 NA non-coding upstream 148553 16929788 ~ 16930144 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 410825 16203937 ~ 16365647 (-)
G205670 NA other downstream 944378 15831650 ~ 15832094 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 1208837 15407944 ~ 15567635 (-)
G205640 NA other downstream 1230850 15543917 ~ 15545622 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other downstream 2798022 13974677 ~ 13978450 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 478551 17259786 ~ 17300993 (-)
LOC103033759 NA other upstream 1062731 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 1258440 18039675 ~ 18041939 (-)
G206575 NA other upstream 2057134 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 2256459 19037694 ~ 19127726 (-)

Expression


Co-expression Network