LOC103029957 (poc1b,LOC107561860)


Basic Information

Item Value
gene id LOC103029957
gene name poc1b,LOC107561860
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 12195908 ~ 12254031 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234184.3
ACCTGCTGAAAAATATCCTGTacgttataaaatatatacccATCTTAGGTTTAGGATTATAACACTGTTAGTGATGTTTACACTGAGTATTTAATCCGGCGGTGTTTAACTCCTCATAGTGCTGATTAACTTCATCATGCCTGAAGCAGATTTAGATAGTAAAGAGCCGGATGTAAATCTTTATGATCTGGAGGATCCCACCCTGGAGAGGTGTTTCAAAGGTCACAGAGATGCAGTACCATGTGCAGATTTCAGTCCAAGCAAGAAGCAGCTGGCCACTGGATCCAGTGACAAGACTGTAATGGTCTGGAACCTCAACCCAAAAGCCAGAGCCTTCAGGTTTGAGGGTCATAAAGATGTGGTAACTGCTGTTCACTTCTCACCATCTGGTGATTTGTTAGCTTCTGCATCCAGGGATAAGACTGTACGACTCTGGACACCAAACATCAAGGGAGACTCAACTGTTTTTACAGCACACACAGCCACAGTGCGCAGTGTAAACTTCTCCAGTGATGGGCAGAGGCTGATCACTGCCTCGGATGACAAGTCTTTAAAAATATGGAGCGTGCATCGGCAGAAGTTCATCTACTCTTTAAACCAGCACACCAACTGGGTGCGCTGTGCAAGGTTTTCACCAGATGGACGATTAGTGGCATCCTGCGGAGATGACAGGACGGTTCGTCTTTGGGACACGTCATCCCGCCAATGCATCAATACATTCACCGACTACGGCGGACCAGCAACATTTGTTGACTTCAATGCCAGCGGTACTTGTATTGCATCCTCTGGAGCAGACAACACACTGAAAATATGGGACATTCGAACAAACAAACTTATACAACATTACCAGGTCCACAGTGCATCCGTCAACTGCTTTTCCTTCCACCCATCTGGAAACTACCTCATCAGTGGCTCCAGTGACAGCACAGTGAAGATCCTGGACCTCCTGGAGGGAAGACTCATCTATACCCTTTATGGCCACAAGGGTCCAGTTCTGGCTGTGGTTTTCTCTCGTGAAGGAGATCTTTTTGCATCTGGTGGAGCTGATTTACAGGTCTTGATGTGGAAGACCAACTTCGACGCACTGAACTACAGGGAACTGTTAAGCAGACACAGCAGGCGGGTAACTCCGGACCCCCCTCCTCATCTGAATGATATCTACCCCAGGTCTCCCCACCTCCACCATACCCAGAATGAAACTGTTGAGATTAATCCTGTTGTTACTAACATCCAGTCAGCTGATCCTCATGTGGTGGAGGTAGGAGAGGTTCCTTACAACATGCCGGGTGTAACTCTGCGTGGGGTCACAGGCTTTAGAGATCGACCAAGCACTGGTATTGCCTCAGCCTCCGCCTGTACTTACAGACAAGAGGAGGAGCGAGAGGAagatgaagagaaagaaaggctAGGACATGGGGTTATGGACCTGTTGGATGAGCGCTGTGGACTTCCAACAGCATTTAGAAGCACTCTGGAGCACATTGTCCAGCAGCTGGATATTCTGACCCAGACTGTAGCTGTTCTCGAAGAGCGCCTCACCCTGACAGAAGACAAGCTGAAGGAGTGTCTGGACAACCAGGCTCTTATTCTTCAGCAGGCACTGCAGACAGACGAGCCAAGTGAGCAGAGGGGCGCTGAGGGACCGGCTGTGTGAGAGACTGAGACCGACCCACTTCAGCCACCGTGGTGGTCCCCACTTCAGGGATCACTGACTCTGGCTTGAAGTAGAGTGCAGACACAGCAATCATTTATCATTTCTCCCTCCTACGTATAATTCCTTCTCTCCACCTGGCTTCCTTCATTACAGAAAAGACACTGGACATGgcagaaagtaaaataaaatctagAATGCATTGAAACAAAAGGGAAGTGGTAAGTGGGGGGGAAGCAGGGTGGAGGTTTGAGGGATTGTGCAGAAGTCAGTTCCAGAAATTCATTAAGTCTCTGCAGAGGAGACAGCTGCAGCTAGCAAAACATCCCAGTCTTGTTTTGACAGCACTGAGGGGTGGCATTCTTCCGGACAGCCGTTCTGAAGACTGATCAGGAGAGAGTGAGCAACACTCACTGCTAAGacaatctctctctatctcgattccttactttcttttttactcCTTAATCTCCCCAATATATGTTCTCACAGATCTTTACATTAGTAAAACATTCTACAAAAGAATTACACAATTTGCAagca
>XM_007234185.3
CCACTGCTCCAGCCTGATGCTGAGCGCGCCCGGTTTAACAGTGGAGGAGTTAACGTTAGCTCTGCAAGCTAAACTCGCTTTATCGGGTTAAAATGAAAGATTAACCTGATTTACTCTCACCGCGCGACTACGTGCCATGAAAGAACCTTCAgcactagctaacctagccgcTCAAACTTCATGGCATCTGTCCTGGAGGATCCCACCCTGGAGAGGTGTTTCAAAGGTCACAGAGATGCAGTACCATGTGCAGATTTCAGTCCAAGCAAGAAGCAGCTGGCCACTGGATCCAGTGACAAGACTGTAATGGTCTGGAACCTCAACCCAAAAGCCAGAGCCTTCAGGTTTGAGGGTCATAAAGATGTGGTAACTGCTGTTCACTTCTCACCATCTGGTGATTTGTTAGCTTCTGCATCCAGGGATAAGACTGTACGACTCTGGACACCAAACATCAAGGGAGACTCAACTGTTTTTACAGCACACACAGCCACAGTGCGCAGTGTAAACTTCTCCAGTGATGGGCAGAGGCTGATCACTGCCTCGGATGACAAGTCTTTAAAAATATGGAGCGTGCATCGGCAGAAGTTCATCTACTCTTTAAACCAGCACACCAACTGGGTGCGCTGTGCAAGGTTTTCACCAGATGGACGATTAGTGGCATCCTGCGGAGATGACAGGACGGTTCGTCTTTGGGACACGTCATCCCGCCAATGCATCAATACATTCACCGACTACGGCGGACCAGCAACATTTGTTGACTTCAATGCCAGCGGTACTTGTATTGCATCCTCTGGAGCAGACAACACACTGAAAATATGGGACATTCGAACAAACAAACTTATACAACATTACCAGGTCCACAGTGCATCCGTCAACTGCTTTTCCTTCCACCCATCTGGAAACTACCTCATCAGTGGCTCCAGTGACAGCACAGTGAAGATCCTGGACCTCCTGGAGGGAAGACTCATCTATACCCTTTATGGCCACAAGGGTCCAGTTCTGGCTGTGGTTTTCTCTCGTGAAGGAGATCTTTTTGCATCTGGTGGAGCTGATTTACAGGTCTTGATGTGGAAGACCAACTTCGACGCACTGAACTACAGGGAACTGTTAAGCAGACACAGCAGGCGGGTAACTCCGGACCCCCCTCCTCATCTGAATGATATCTACCCCAGGTCTCCCCACCTCCACCATACCCAGAATGAAACTGTTGAGATTAATCCTGTTGTTACTAACATCCAGTCAGCTGATCCTCATGTGGTGGAGGTAGGAGAGGTTCCTTACAACATGCCGGGTGTAACTCTGCGTGGGGTCACAGGCTTTAGAGATCGACCAAGCACTGGTATTGCCTCAGCCTCCGCCTGTACTTACAGACAAGAGGAGGAGCGAGAGGAagatgaagagaaagaaaggctAGGACATGGGGTTATGGACCTGTTGGATGAGCGCTGTGGACTTCCAACAGCATTTAGAAGCACTCTGGAGCACATTGTCCAGCAGCTGGATATTCTGACCCAGACTGTAGCTGTTCTCGAAGAGCGCCTCACCCTGACAGAAGACAAGCTGAAGGAGTGTCTGGACAACCAGGCTCTTATTCTTCAGCAGGCACTGCAGACAGACGAGCCAAGTGAGCAGAGGGGCGCTGAGGGACCGGCTGTGTGAGAGACTGAGACCGACCCACTTCAGCCACCGTGGTGGTCCCCACTTCAGGGATCACTGACTCTGGCTTGAAGTAGAGTGCAGACACAGCAATCATTTATCATTTCTCCCTCCTACGTATAATTCCTTCTCTCCACCTGGCTTCCTTCATTACAGAAAAGACACTGGACATGgcagaaagtaaaataaaatctagAATGCATTGAAACAAAAGGGAAGTGGTAAGTGGGGGGGAAGCAGGGTGGAGGTTTGAGGGATTGTGCAGAAGTCAGTTCCAGAAATTCATTAAGTCTCTGCAGAGGAGACAGCTGCAGCTAGCAAAACATCCCAGTCTTGTTTTGACAGCACTGAGGGGTGGCATTCTTCCGGACAGCCGTTCTGAAGACTGATCAGGAGAGAGTGAGCAACACTCACTGCTAAGacaatctctctctatctcgattccttactttcttttttactcCTTAATCTCCCCAATATATGTTCTCACAGATCTTTACATTAGTAAAACATTCTACAAAAGAATTACACAATTTGCAagcatctctgtgtgtgtgtataaagtgtcTGTCCTCAGAGATACTCTTGGCCTTGTTTGTGTTTGCTCTCCCCTGCAGCCGCGTGGCTTTCCTCTGGGTGGAGGTCAGGCGGAAGTGGTGGAGTCGAGACACAAAGGGTCCAGCGTCTCATGTTTGCTTTGGGTACCACATCCTTCCTCATGCTGGCGCTTTGCTCCTTCCGCACTCGTACTTTCACGCAGAAAAGTTACGACACTGGCctgagaacaaaaacaaaacattcagttctctttaaaaaaaagaaaagaacatctGCAAGTGGCAATCACGAGTTATTTTACAAGAGCTCTGCAAAAAAAGGCTTGTGCTACTTGCTGTTGATTTATTTCCATTAATCTTGCTGAGAAAACATGCTATGTCAGACAGCAGCAAAGATATCTAAATAGATAAACAAGTAGCATGCATTGACTTTATCATGAGATCTGCAATACTAAAGATGAAAAACTTTGGGGATCGTATTTGCTCTGATGGATTGAATGGAATAAATCAGTGGTTTCTA
>XM_022683570.1
ACGGACTGACTAACGGAAGAACAAATCGACTaactggttagctagctaactaactaagctAACGCTAGGTTGGTTGTGTTATTAAATATAGACAGCTATCGTTAAATGGCTCAGTTAGACAGGGGCTATAGTAATGACGCTAGACTTGGTGAGCAGGAGAGTTATGACTTGTGCTGGTGGATGTGGGTTTAGTACTTCTTAATTACAATAGTAAAGTGCAGGTTAATATAGACGTGATGTTCACGTCTACAAGCTACAAGCTGGAAAGCTGCTGTTGTTTGCTGGGAGTTGGGAGGAAACCCAGTGAGGAGGATCCCACCCTGGAGAGGTGTTTCAAAGGTCACAGAGATGCAGTACCATGTGCAGATTTCAGTCCAAGCAAGAAGCAGCTGGCCACTGGATCCAGTGACAAGACTGTAATGGTCTGGAACCTCAACCCAAAAGCCAGAGCCTTCAGGTTTGAGGGTCATAAAGATGTGGTAACTGCTGTTCACTTCTCACCATCTGGTGATTTGTTAGCTTCTGCATCCAGGGATAAGACTGTACGACTCTGGACACCAAACATCAAGGGAGACTCAACTGTTTTTACAGCACACACAGCCACAGTGCGCAGTGTAAACTTCTCCAGTGATGGGCAGAGGCTGATCACTGCCTCGGATGACAAGTCTTTAAAAATATGGAGCGTGCATCGGCAGAAGTTCATCTACTCTTTAAACCAGCACACCAACTGGGTGCGCTGTGCAAGGTTTTCACCAGATGGACGATTAGTGGCATCCTGCGGAGATGACAGGACGGTTCGTCTTTGGGACACGTCATCCCGCCAATGCATCAATACATTCACCGACTACGGCGGACCAGCAACATTTGTTGACTTCAATGCCAGCGGTACTTGTATTGCATCCTCTGGAGCAGACAACACACTGAAAATATGGGACATTCGAACAAACAAACTTATACAACATTACCAGGTCCACAGTGCATCCGTCAACTGCTTTTCCTTCCACCCATCTGGAAACTACCTCATCAGTGGCTCCAGTGACAGCACAGTGAAGATCCTGGACCTCCTGGAGGGAAGACTCATCTATACCCTTTATGGCCACAAGGGTCCAGTTCTGGCTGTGGTTTTCTCTCGTGAAGGAGATCTTTTTGCATCTGGTGGAGCTGATTTACAGGTCTTGATGTGGAAGACCAACTTCGACGCACTGAACTACAGGGAACTGTTAAGCAGACACAGCAGGCGGGTAACTCCGGACCCCCCTCCTCATCTGAATGATATCTACCCCAGGTCTCCCCACCTCCACCATACCCAGAATGAAACTGTTGAGATTAATCCTGTTGTTACTAACATCCAGTCAGCTGATCCTCATGTGGTGGAGGTAGGAGAGGTTCCTTACAACATGCCGGGTGTAACTCTGCGTGGGGTCACAGGCTTTAGAGATCGACCAAGCACTGGTATTGCCTCAGCCTCCGCCTGTACTTACAGACAAGAGGAGGAGCGAGAGGAagatgaagagaaagaaaggctAGGACATGGGGTTATGGACCTGTTGGATGAGCGCTGTGGACTTCCAACAGCATTTAGAAGCACTCTGGAGCACATTGTCCAGCAGCTGGATATTCTGACCCAGACTGTAGCTGTTCTCGAAGAGCGCCTCACCCTGACAGAAGACAAGCTGAAGGAGTGTCTGGACAACCAGGCTCTTATTCTTCAGCAGGCACTGCAGACAGACGAGCCAAGTGAGCAGAGGGGCGCTGAGGGACCGGCTGTGTGAGAGACTGAGACCGACCCACTTCAGCCACCGTGGTGGTCCCCACTTCAGGGATCACTGACTCTGGCTTGAAGTAGAGTGCAGACACAGCAATCATTTATCATTTCTCCCTCCTACGTATAATTCCTTCTCTCCACCTGGCTTCCTTCATTACAGAAAAGACACTGGACATGgcagaaagtaaaataaaatctagAATGCATTGAAACAAAAGGGAAGTGGTAAGTGGGGGGGAAGCAGGGTGGAGGTTTGAGGGATTGTGCAGAAGTCAGTTCCAGAAATTCATTAAGTCTCTGCAGAGGAGACAGCTGCAGCTAGCAAAACATCCCAGTCTTGTTTTGACAGCACTGAGGGGTGGCATTCTTCCGGACAGCCGTTCTGAAGACTGATCAGGAGAGAGTGAGCAACACTCACTGCTAAGacaatctctctctatctcgattccttactttcttttttactcCTTAATCTCCCCAATATATGTTCTCACAGATCTTTACATTAGTAAAACATTCTACAAAAGAATTACACAATTTGCAagcatctctgtgtgtgtgtataaagtgtcTGTCCTCAGAGATACTCTTGGCCTTGTTTGTGTTTGCTCTCCCCTGCAGCCGCGTGGCTTTCCTCTGGGTGGAGGTCAGGCGGAAGTGGTGGAGTCGAGACACAAAGGGTCCAGCGTCTCATGTTTGCTTTGGGTACCACATCCTTCCTCATGCTGGCGCTTTGCTCCTTCCGCACTCGTACTTTCACGCAGAAAAGTTACGACACTGGCctgagaacaaaaacaaaacattcagttctctttaaaaaaaagaaaagaacatctGCAAGTGGCAATCACGAGTTATTTTACAAGAGCTCTGCAAAAAAAGGCTTGTGCTACTTGCTGTTGATTTATTTCCATTAATCTTGCTGAGAAAACATGCTATGTCAGACAGCAGCAAAGATATCTAAATAGATAAACAAGTAGCATGCATTGACTTTATCATGAGATCTGCAATACTAAAGATGAAAAACTTTGGGGATCGTATTTGCTCTGATGGATTGAATGGAATAAATCAGTGGTTTCTA

Function

symbol description
poc1b Acts upstream of or within several processes, including epithelial cilium movement involved in determination of left/right asymmetry; optokinetic behavior; and retina layer formation. Predicted to be located in centriole. Human ortholog(s) of this gene implicated in cone-rod dystrophy 20. Orthologous to human POC1B (POC1 centriolar protein B).

NR:

description
PREDICTED: POC1 centriolar protein homolog B

GO:

id name namespace
GO:0003014 renal system process biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process

KEGG:

id description
K16482 POC1; centriolar protein POC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234184.3 False 2194 mRNA 0.48 12 12196442 12254031
XM_007234185.3 False 2733 mRNA 0.48 12 12195908 12253585
XM_022683570.1 True 2846 mRNA 0.47 12 12195908 12252850

Neighbor

gene id symbol gene type direction distance location
dusp6 dusp6,LOC107574886 coding downstream 17773 12173364 ~ 12178135 (-)
LOC103034292 LOC108439345,LOC107707451 coding downstream 73484 12063652 ~ 12122424 (-)
mid2 mid2,LOC107707205 coding downstream 1580911 10484723 ~ 10614997 (-)
pin4 pin4,LOC107666591 coding downstream 1760101 10432612 ~ 10435807 (-)
acsl4 acsl4,acsl4a,LOC107751919,LOC107666599 coding downstream 1764829 10417428 ~ 10431079 (-)
LOC111195717 NA coding upstream 12770 12266801 ~ 12272985 (-)
LOC103029000 LOC108439349 coding upstream 22283 12276314 ~ 12281575 (-)
LOC103029424 LOC108439350 coding upstream 30038 12284069 ~ 12287419 (-)
mxd3 mxd3,LOC107550994,LOC107712304,LOC107706726,LOC107558056 coding upstream 154704 12408735 ~ 12415936 (-)
ptcd3 NA coding upstream 192695 12446726 ~ 12462753 (-)
G204749 NA non-coding downstream 1632 12193110 ~ 12194276 (-)
G204713 NA non-coding downstream 68738 12126835 ~ 12127170 (-)
G204704 NA non-coding downstream 132630 12062314 ~ 12063278 (-)
G204689 NA non-coding downstream 242654 11946722 ~ 11953254 (-)
G204674 NA non-coding downstream 598139 11597399 ~ 11597769 (-)
G204750 cep41,LOC107574848,LOC107679575 non-coding upstream 5305 12259336 ~ 12259760 (-)
G204755 NA non-coding upstream 6264 12260295 ~ 12262393 (-)
G204837 NA non-coding upstream 51293 12305324 ~ 12305932 (-)
G204847 NA non-coding upstream 75936 12329967 ~ 12330224 (-)
G204848 NA non-coding upstream 95948 12349979 ~ 12350186 (-)
G204671 NA other downstream 611834 11583200 ~ 11584074 (-)
G204584 NA other downstream 1551221 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 2436841 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 4452336 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 5403917 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 1479682 13733713 ~ 13739921 (-)
G205375 NA other upstream 1490322 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 1648172 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 1688692 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 1720646 13974677 ~ 13978450 (-)

Expression


Co-expression Network