LOC103024064 (LOC108416404)


Basic Information

Item Value
gene id LOC103024064
gene name LOC108416404
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39928564 ~ 39931679 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007234331.3
GAGCCTCACCATAAGGGTCAGAGTTAATAATCTGCTAGGGGTTCAGAGTGATGATCTGGTGCTTCAGAAGTTCAGGCTTCTTCATTCAATAAACTGCTCACTAAACCCTGCAGCTCTGCAATGTTAGGGAAGGCTTGTTCTGCTGTTCTTCTGCTGATGTTGGGATGGCACTGCGCTGGAGCAGTGAAGGACCTGCGGCCTGATATTACTGATCAGGAGTTGTTTTGGGGAGCAGATCAGTATGACTTTGCCATTGTGCTCCCAGCTGCAGGCCTCGACTGTTTCTGGCATTTTGCTCACCTAGGAGAACACTTCTACCTCCACTTTATGGTTCAGTGGGTGACCGGAGTGGCTGTGGACAGGCATCTCTCCGTCATTGTTAATGCTCCGAGTGGCCTTGTTGTGGGCTCAGTGGACGACGCCAGGGGTGAGATCGCTTTCACCACTAAAGAGACTGGTTTCTATCAGATGTGCTTCAGCAACTTCCACAATCGCTTTGGCAGCATGCAGATTTTTCTGAACTTTGGTGTGTACTATGAAGATTCAGGGGATGTCAGAaatcagaaagagaaagaggagattaagaaagaggaagagaagaaggaATTAAACAGTACACTCACTACTATTGAGATAAGCTCCGTCCGAGTGCAGGCCCATGTGTTTCACATGTGGCGTTTTTATAACTTTGAGAGAATGAGAAGAGGGACAGATTACTACCTGCTGCAATCCAACGGCAACTACATCAGCACCTGGTCAACTGTCCAGAGCTTCGTCATCGTCATGGCCGGATACCTACAGCTCTTCTTCCTCAAGAAGCTTTTTGAGACCAAGCCCACCACAGAGACAGACAAGCCCCGCTGCTGACCTCTCCTCCCCATGCTCCTGAAGTACTCGAGGACATCAAAGATAGCCTTGCTCTGATGAATGTTAAATGACCTTTAAGTGACTCTATTGTCACTCTTCCTATCACACATGTATACTCTACACACATGAATAAAGCTCATCATCAGCTCA

Function

NR:

description
PREDICTED: transmembrane emp24 domain-containing protein 6-like

GO: NA

KEGG:

id description
K20351 TMED6; p24 family protein gamma-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007234331.3 True 1017 mRNA 0.47 4 39928564 39931679

Neighbor

gene id symbol gene type direction distance location
LOC111195796 NA coding downstream 1919 39923198 ~ 39926645 (-)
mlkl NA coding downstream 6730 39911444 ~ 39921834 (-)
LOC103024376 NA coding downstream 20773 39889497 ~ 39907791 (-)
LOC103024693 LOC103024693,LOC108418564 coding downstream 41727 39882684 ~ 39886837 (-)
LOC103025209 adam19,LOC103025209 coding downstream 49111 39844601 ~ 39879453 (-)
pdia3 pdia3,LOC107696263,LOC107716732,LOC107753598,LOC107573964,LOC107661453 coding upstream 51115 39982794 ~ 39988361 (-)
LOC103022288 ckmt1,LOC103022288,LOC108418758,LOC107753597,LOC107661454,LOC107554962,LOC107696262 coding upstream 63829 39995508 ~ 40008594 (-)
LOC103047731 abhd2,abhd2b,LOC108418794,LOC107753686,LOC107665722 coding upstream 90858 40022537 ~ 40034090 (-)
LOC103029855 NA coding upstream 145158 40076837 ~ 40097960 (-)
LOC103046604 LOC108418995,LOC108268792,LOC107753548,LOC107666287,LOC107716682 coding upstream 233821 40165500 ~ 40220734 (-)
G210800 NA non-coding downstream 108661 39816624 ~ 39819903 (-)
G210799 grxcr1,si:dkey-109l4.6,LOC102787492 non-coding downstream 115000 39813339 ~ 39813564 (-)
G210772 LOC108418277,LOC108268893 non-coding downstream 424158 39503698 ~ 39504406 (-)
G210764 scyl1,ganab,LOC107741476,LOC107756491,LOC107601512 non-coding downstream 427631 39463107 ~ 39500933 (-)
G210873 NA non-coding upstream 103884 40035563 ~ 40036100 (-)
G210868 NA non-coding upstream 123044 40054723 ~ 40055218 (-)
G210934 NA non-coding upstream 140706 40072385 ~ 40074768 (-)
G210937 NA non-coding upstream 174925 40106604 ~ 40108923 (-)
G210949 NA non-coding upstream 206197 40137876 ~ 40138308 (-)
atp8a1 atp8a1 other downstream 132621 39643544 ~ 39795943 (-)
bend4 bend4 other downstream 296388 39613715 ~ 39632176 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other downstream 387748 39527633 ~ 39540816 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 2724179 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 3118068 36809307 ~ 36810496 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 1437 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 429579 40361258 ~ 40363237 (-)
G210995 NA other upstream 441126 40372805 ~ 40378353 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other upstream 627005 40558684 ~ 40570148 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 1227551 41159230 ~ 41219443 (-)

Expression


Co-expression Network