mif (mif,LOC107680670,LOC107594949,LOC107594906)


Basic Information

Item Value
gene id mif
gene name mif,LOC107680670,LOC107594949,LOC107594906
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 6407479 ~ 6409639 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235298.3
cacGTGACCTGACGAGTCATCGTTCTAAAGTCTGGACTTAGGAGGAAGAGAGGCTGTAGTGTAGGGCTGAGCTGTAGAGAGATCAGGGCAGAGCTGTGCAGCTTATTAGGAGACTCTTTATTTCTTGCTGTCTTGCTGAACAGGGAAGCTGCCGCCATGCCGATGTTTGTGGTGAACACTAACGTGGGGAAGGACGTGGTTCCTGCAGATCTAATGTCGCAGCTCACAGAGGAGCTCGCCAAGGCGATGGGCAAACCTGCTAATtaCATCGCTGTGCATATCATTCCTGATCAGATGATGATGTTTGGGGGCAAATCGGATCCCTGCGCTCTCTGCTCCCTCCACAGCATTGGAAAGATCGGTGGCTCACAGAACAAGCAGTATTCCAAACTGCTGATGGGTATACTCAATAAACATCTTGGCATTTCACCGGACAGgaTCTACATAAACTTTTTTGACATGGATGCAGCAAATGTGGCCTGGAACAACTCCACCTTTGGTTAAAGGATCTGGAGAACTTCCCATCTCACCCCTTCAGCTACAGAAACAGTAGTCTGTAGAGCACTAAACAAATAATAGCTCTCATCATACATGGCACTTAATATAGATTTGCGAATTTCGGTTTGTAGTGGCTGCATGCATATTCCCCCTTTTTTTATGAAGGTTAACCTGCTGGCGGTGGATTTCAGTGCTTCACAAGAAGCACaataactgtaaaatgtaattgtcAATCTTTTatctgtaaaagaaaaactgcACAGGTTTTTGCACATAGTATTAAGGTAAATTGACATGCACACCAAATATGAACAGTTATTCCCTGTAATAAAGTCTTAAAGAAAACACTCGACATTTCTTGAGTATGCAGTTAAAGTGTGGCATAAGACTCCTAGCAGTAGTTTgttctatatacagtatgtcaTATGCAACACACTGTCAGAGCTTTGATAAggcaataaaatgttttgatcACCCTG

Function

symbol description
mif Acts upstream of or within several processes, including auditory receptor cell development; embryonic morphogenesis; and negative regulation of apoptotic process. Is expressed in several structures, including digestive system; immature eye; nervous system; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in allergic disease; asthma; cystic fibrosis; lung disease (multiple); and obesity. Orthologous to human MIF (macrophage migration inhibitory factor).

NR:

description
macrophage migration inhibitory factor-like

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0048839 inner ear development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0008283 cell population proliferation biological_process

KEGG:

id description
K07253 MIF; phenylpyruvate tautomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235298.3 True 977 mRNA 0.43 3 6407479 6409639

Neighbor

gene id symbol gene type direction distance location
clp1 clp1,LOC107750374,LOC107680590,LOC107749782,LOC107594950 coding downstream 6174 6393195 ~ 6401305 (-)
LOC103038082 LOC108424155 coding downstream 40292 6361388 ~ 6367187 (-)
LOC103033238 med19,med19a,LOC107745077,LOC107684830 coding downstream 46763 6344595 ~ 6360716 (-)
LOC103038710 ssrp1a,LOC108269282,LOC108424210,LOC107737799,LOC107684835 coding downstream 164021 6226632 ~ 6243458 (-)
LOC107196999 NA coding downstream 185479 6210816 ~ 6222000 (-)
LOC103037435 NA coding upstream 22746 6432385 ~ 6435973 (-)
LOC111188205 LOC108424126 coding upstream 25891 6435530 ~ 6444450 (-)
LOC111195822 NA coding upstream 34567 6444206 ~ 6457539 (-)
LOC111195712 NA coding upstream 594409 7004048 ~ 7013680 (-)
LOC103028028 NA coding upstream 1820452 8230091 ~ 8246950 (-)
LOC111195709 NA non-coding downstream 118547 6269259 ~ 6288932 (-)
G203745 NA non-coding downstream 132187 6255462 ~ 6275292 (-)
G203740 NA non-coding downstream 196898 6209914 ~ 6210581 (-)
G203738 NA non-coding downstream 201623 6205157 ~ 6205856 (-)
G203737 NA non-coding downstream 204420 6202003 ~ 6203059 (-)
G203761 NA non-coding upstream 7629 6417268 ~ 6420967 (-)
G203762 NA non-coding upstream 12311 6421950 ~ 6486904 (-)
G203763 NA non-coding upstream 13142 6422781 ~ 6424265 (-)
G203783 NA non-coding upstream 104312 6513951 ~ 6553987 (-)
G203818 NA non-coding upstream 171683 6581322 ~ 6581736 (-)
selenoh selenoh other downstream 2191 6402156 ~ 6405288 (-)
LOC103032694 zdhhc5,zdhhc5b,LOC107594917,LOC107750372 other downstream 14713 6376735 ~ 6392766 (-)
G203734 NA other downstream 216364 6185773 ~ 6191115 (-)
stx3 stx3,LOC106516362,LOC103147491 other downstream 248970 6121487 ~ 6158509 (-)
ids ids other downstream 1024711 5368819 ~ 5382768 (-)
trnai-uau_40 NA other upstream 120400 6530039 ~ 6530131 (-)
trnai-uau_41 NA other upstream 120948 6530587 ~ 6530679 (-)
trnai-uau_42 NA other upstream 121937 6531576 ~ 6531668 (-)
trnai-uau_43 NA other upstream 122798 6532437 ~ 6532529 (-)
jph3 jph3,LOC100148063,LOC107714052,LOC107654149,LOC107581833 other upstream 184739 6594378 ~ 6673928 (-)

Expression


Co-expression Network