hspa9 (hspa9,LOC106604950,LOC106611979)


Basic Information

Item Value
gene id hspa9
gene name hspa9,LOC106604950,LOC106611979
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13780145 ~ 13798633 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236476.3
gtacagagagagagagagttctagaagatccagcagaagatcagaacctccagcagctccagcagcagcagctctacaGCAGAAGAACCAGCCGGGACTGAGCCCCACTGATCCTGTCgctataattataaatattcatatttctgAGAGATTTATTAGAGATTAAAAATGCTGAATGCTGGAAGAACAGTGTGCAGGATGGTCTCCGGATCCTCCAGCTCTGTAGCTCCTCTGGTGAAGAAGgctTGCTGGAATGGACTGCTCGAACATCCCCTCCGGGCGGCCGCCAGACGAGAATATGCTTCAGAAGCAATCAAAGGAGCTGTGATTGGCATTGACCTGGGGACCACGAACTCCTGTGTAGCAGTTATGGATGGGAAACAAGCAAAGGTCCTTGAAAACGCAGAGGGTGCACGCACAACCCCGTCAGTGGTGGCCTTTACTGCTGATGGAGAGAGATTGGTGGGCATGCCAGCAAAAAGACAAGCAGTCACCAACCCCAAAAACACACTGTACGCCACCAAGCGTCTGATTGGACGGCGCTTTGAAGACGCAGAAGTCCAGAAGGATTTGAAAAATGTTCCATTTAAGATTGTGCGGGCGTCTAACGGGGATGCTTGGATAGAAGCCCACGGAAAGCTGTACTCCCCCAGCCAGGTCGGTGCCTTTGTCCTGATGAAGATGAAGGAAACTGCAGAGAGCTACCTGGGCCATAATGTGAAGAATGCAGTTGTGACTGTACCTGCCTATTTTAATGACTCCCAGAGACagGCTACTAAAGACGCTGGTCAGATCTCCGGCCTGAACGTCCTCAGAGTCATCAACGAGCCGACGGCAGCCGCTCTGGCGTACGGACTCGATAAGACTCAGGACaaagtGATTGCGGTTTATGATCTGGGCGGGGGTACGTTTGATATCTCCGTGCTGGAGATACAGAAGGGAGTGTTTGAGGTGAAATCTACTAACGGAGACACATTCCTGGGAGGAGAGGATTTTGATCAGCACTTACTGCAACATATAGTGAAGGAGTTTAAAAGAGAGtcCGGTGTGGATCTCACCAAAGATAACATGGCACTGCAGAGGGTACGAGAGGCAGCGGAGAAGGCCAAGTGTGAACTTTCCTCCTCTCTGCAGACCGACATCAACCTGCCTTACCTGACCATGGACAGCTCTGGTCCCAAACACTTGAACATGAAGCTGACCCGGGCCCAGTTCGAGGGCATTGTGTCGGACCTGATCCGCAGGACAGTGGCGCCCTGTCAGAAAGCCATGCAGGACGCTGAGGTTTCCAAGAGTGATATTGGAGAGGTGCTGCTGGTGGGAGGAATGACCCGCATGCCGAAGGTTCAGCAGACGGTGCAGGATCTGTTTGGCCGCGCTCCGAGTAAATCCGTAAACCCAGACGAGGCTGTGGCTATTGGTGCAGCGATCCAGGGAGGAGTTCTGGCCGGTGATGTGACGGACGTGCTGCTGCTGGACGTCACGCCTCTGTCTCTGGGTATCGAGACGCTGGGAGGCGTCTTCACCAAACTCATCAACAGGAATACAACCATTCCCACCAAGAAGGGCCAGGTGTTCTCCACAGCTGCTGATGGTCAGACTCAGGTTGAAATTAAAGTGTGTCAGGGTGAGCGAGAGATGGCGGCCGATAACAAAATTCTTGGACAGTTTACTCTGGTTGGGATCCCTCCAGCTCCCCGTGGCGTCCCACAGATCGAAGTCACCTTTGATATCGATGCCAATGGAATCGTTCATGTTTCAGCTAAAGACAAGGGCACTGGACGTGAACAGCAGATTGTTATCCAGTCTTCCGGCGGTCTCAGTAAGGACGATATTGAGAACATGATCAAGAATGCAGAGAAGTACGCTGAGGAGGACAGGAGGAGAAAGGACCGGGTTGAGGCTGTAAACATGGCTGAGGGTATTGTTCACGATACAGAGTCAAAAATGGAGGAGTTCAAGGATCAGCTTCCTGCAGATGAGTGCAACAAACTGAAAGAAGAAATCACTAAAGTACGAGACCTGCTGTCGCGGAAGGAGACTGAGACCGGCGAGAACATCAAACAGGCCGCCACAAACCTGCAGCAGGCGTCTCTAAAGCTCTTCGAGGTGGCCTACAAGAAGatgGCATCAGAaagagacagcagcagcagcagcagcagttcgagCGGATCAGAAACCGGAGAGAAGAAGGAAGGACAGCAGTAGAGCTTCTTCACTATCAGTCCGTCGGCTGATGAGCTTGGGATTATAAACTGTCTTGAGCAGAAATTCGCACTCATATTCTCATACTGTGTTTTTGCAGtatcaaatatataaagttcATTAGTGTTCACTATATTGCTGCCCCTCCCCTCCTTCCTCTCCCTCTAAACCTTATTTGTCTTATCATCTATATTaaagattcttttttttctgatgttaattattatataatgtgATTTAGTCATTGaattttggtctgtttttccaCTTAGAGAAGCTTTGTATTAAAATCATAAAGTTATGGAACTCATAATATACTGTCTGTCTATGTTTAAGGAGGTATGAGTGTGTTTGAGCATTGTGTAAAGAACAGAACTGTActtatttgtctgtttattcTGCAATTTTTATCTGTGCTGATGGTTGAATGTTTAGGATGATGGATTAAAGTGTCCCTGTGCTGATAATGTCCTAAA

Function

symbol description
hspa9 Predicted to enable several functions, including ATP binding activity; ATP hydrolysis activity; and misfolded protein binding activity. Acts upstream of or within fin regeneration and hemopoiesis. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; eye; midbrain; musculature system; and segmental plate. Human ortholog(s) of this gene implicated in Parkinson's disease and autosomal dominant sideroblastic anemia 4. Orthologous to human HSPA9 (heat shock protein family A (Hsp70) member 9).

NR:

description
PREDICTED: stress-70 protein, mitochondrial

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006457 protein folding biological_process
GO:0031101 fin regeneration biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04043 dnaK, HSPA9; molecular chaperone DnaK

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236476.3 True 2681 mRNA 0.49 17 13780145 13798633

Neighbor

gene id symbol gene type direction distance location
LOC111195730 NA coding downstream 2549 13774336 ~ 13777596 (-)
LOC103037229 NA coding downstream 13054 13765516 ~ 13767091 (-)
atoh8 atoh8,LOC107746166,LOC107688589,LOC107591885 coding downstream 15922 13751413 ~ 13764223 (-)
LOC103037875 NA coding downstream 46485 13726665 ~ 13733660 (-)
fgfrl1 fgfrl1,LOC107730574 coding downstream 232548 13536489 ~ 13547597 (-)
csnk1a1 csnk1a1,LOC106611977,LOC107554841,LOC107742481,LOC106604944,LOC107593197 coding upstream 60588 13859221 ~ 13887086 (-)
sil1 NA coding upstream 90956 13889589 ~ 13898713 (-)
timm8a timm8a,LOC107593201,LOC107680336,LOC107742474 coding upstream 130329 13928962 ~ 13930912 (-)
btk btk coding upstream 142619 13941252 ~ 13973029 (-)
LOC111195849 NA coding upstream 2228084 16026717 ~ 16027163 (-)
G205378 NA non-coding downstream 640 13768739 ~ 13779505 (-)
G205363 NA non-coding downstream 36798 13742620 ~ 13743347 (-)
G205361 hdac3,LOC103471067 non-coding downstream 92309 13685401 ~ 13687836 (-)
G205343 NA non-coding downstream 129318 13634724 ~ 13650827 (-)
G205345 NA non-coding downstream 136635 13638574 ~ 13643510 (-)
G205386 NA non-coding upstream 27879 13826512 ~ 13827387 (-)
G205387 NA non-coding upstream 34934 13833567 ~ 13833945 (-)
G205423 gsr,LOC107680979 non-coding upstream 187197 13985830 ~ 13991653 (-)
G205401 NA non-coding upstream 194120 13992753 ~ 13995460 (-)
G205448 NA non-coding upstream 431692 14230325 ~ 14230606 (-)
G205375 NA other downstream 2524 13744353 ~ 13777621 (-)
LOC111195729 NA other downstream 40224 13733713 ~ 13739921 (-)
G204671 NA other downstream 2196071 11583200 ~ 11584074 (-)
G204584 NA other downstream 3135458 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 4021078 9723402 ~ 9759067 (-)
LOC103033675 LOC108410893 other upstream 103570 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 144090 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 176044 13974677 ~ 13978450 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other upstream 1609311 15407944 ~ 15567635 (-)
G205640 NA other upstream 1745284 15543917 ~ 15545622 (-)

Expression


Co-expression Network