LOC103042952 (LOC103042952,LOC107695597,LOC107577899)


Basic Information

Item Value
gene id LOC103042952
gene name LOC103042952,LOC107695597,LOC107577899
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40302159 ~ 40307383 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238079.3
AACCACAAGTATATTATACCGTGGTGAACTGCTTGGCTCTATGCGGTTTTCTAGTGTATTCTGCTCCGCTCCAGAGGAACCACTCGGAAATTACATGAGCGGAAGGGATTTTCGAAGAAGAAAACAGTTGAATGGCGGTTCTCCTCCTCTGTTCCAGGAGTGAGTTTTTTTAAAGCCGGTTTTTTGGACAGATGAGCCCGTCTACACAcgAAATGCTATAGTTTAACCTGGATCACATAAAGAGCAGAAGATATGGATGATACCACACTGGAAGAGCCGAGGCCTGATGGCAGTCcttttccagagctggatgATCCTGAAGCAGCTGAATCTCTCAATAACGCCTGCCTGCTGGATGACAGCGACCTGCCGTTTAATGATCTGGGTGCCTCTCATGATTTTTCTCATTTACTTATTCCTGAAACTCCTGAAATTCCTGAAAGCCCTGTTTTGTTTAGAAGAAAACGGCAGTCCCAGGTATCTGATAATCACAGTGAGGCTTTGATGTGTGCTTCAAATGCCAGAAGATCAGACAGATGGGACATGATGCCTGGATACCTCCACAAAACTCCAAACTCTCAGAGAACACTGAAGCGTCGGCGGCTCCACGGCACAGAAGGGAGCAGTCAAGAATCACAAGGAAGAACAGGAGGAAATGGATTTGTACCTGCTTCGTCTCTTTTAAGTTCAAACTGCTTTTGGCTGGAGTCCCCATGTCCGCCACCATCCTCCTTTTCTTGCTCTGCCACTTTATCTGCCTCGTCCTCTGCTGGAGCTCCTGAACACTTAATGCTGGAAactgcttcttctgctgctggtgGTCTAAATGGTTTTAATGAGATGTCTTCTTTTGATCATACCTCCACTGATCAAAAAAAGTGTAGTAGTAAAGAACAGAAATCTAGaaggaaaaacacaagaaatggTTCAAGGACCACTAGAACTGCAACAGCTGCACCTTTGTATAGACCTGAAGAACAACACTTGCTAGATGTGCTTAACACGGatacagagagaagtGAAGCTGTGAATCCTTCAGCATGTCAAATACAGGAGGAGATTGTTATCAtagatgaggatgaggaggatgatGTGGTTGTTGAGGCAATGGTTCGCTCCATTCAGATGGCTGAAGATGAGGCATTTGCCAGAAGCCTTCAGGATCAGTTTGACAGAGAGGAGCAGATACAGCAGGACCATAGAAGACAGCAGACAGCTCAACCTACCAGGCACACCCATAACAACCCGTTTGACTCTTATGTAGGTTTAGACTGGATCTCTCCATGGGCCTCCATGGTAAACTCTCCATCATTCAGAAGCCTGGGGTTGACTGAGCTGCAGCAGGCCATGTTTGAAGGGCAAGCTGGTGGCCAAGTGAGACAACCTCGGACTCGACGCACTCGCAACACTCGCCGCAGACAGCCTGTGCCTGTGGACCTGTTTGATGACAGTCAGGGAAATAACTATGAGGCCCTTCTAGCCTTTGAGGAAAACCAGGGAAGTGCAGTGGCCAAGAACAATCTTAGTAAAGGTGACATAGAGAGACTCCCTACAAAAGtgtatgaccctgcacatagTGCTGGGAAAACAGAGTGTCAGATCTGTTTCTGTGATTACAAACAGGGGGAGAAATTGCGAATTCTTCCATGTCTTCATGACTACCATGTGAAGTGCATAGATCGCTGGTTAAAAgaGAATTCCACCTGTCCTATATGCAGGGCGGATGTATCAGAGTGTGGTGGCTTTTCATGATGCACAGGGTTTAATGTTtgacttttgtttttaaaaatgcccAACACAATGCGAAGGATGGACCAGCATAAACactgtatgttttaaatgttctgaCAAACGATTTAAGTTTACAAAAGTATTCTGTTGTACATTTTAGTAAGAAATTAACATTCACTGTTCAACTACtacaatttttacttttttatataataaattacattttatgga

Function

NR:

description
uncharacterized protein LOC103042952

GO: NA

KEGG:

id description
K10664 ATL6S; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238079.3 True 1962 mRNA 0.45 11 40302159 40307383

Neighbor

gene id symbol gene type direction distance location
c24h15orf40 NA coding downstream 52617 40246606 ~ 40249542 (-)
cartpt cartpt,LOC107679585,LOC107574592,LOC107666283 coding downstream 71850 40228839 ~ 40230309 (-)
LOC103046604 LOC108418995,LOC108268792,LOC107753548,LOC107666287,LOC107716682 coding downstream 81425 40165500 ~ 40220734 (-)
LOC103029855 NA coding downstream 204199 40076837 ~ 40097960 (-)
LOC103047731 abhd2,abhd2b,LOC108418794,LOC107753686,LOC107665722 coding downstream 268069 40022537 ~ 40034090 (-)
LOC103043462 sycp3,LOC103043462,LOC107666284,LOC107590858,LOC108269409 coding upstream 1111 40308494 ~ 40312741 (-)
actr6 actr6,arp6 coding upstream 5501 40312884 ~ 40317812 (-)
gtse1 NA coding upstream 11406 40318789 ~ 40325440 (-)
LOC103045095 LOC103045095,LOC107590823,LOC107753557,LOC108268426,LOC106608917,LOC101062121 coding upstream 20456 40327839 ~ 40355276 (-)
LOC103028575 LOC108419324,LOC108269048,LOC107693229 coding upstream 263199 40570582 ~ 40582953 (-)
G210959 NA non-coding downstream 138609 40163333 ~ 40163550 (-)
G210949 NA non-coding downstream 163851 40137876 ~ 40138308 (-)
G210937 NA non-coding downstream 193236 40106604 ~ 40108923 (-)
G210934 NA non-coding downstream 227391 40072385 ~ 40074768 (-)
G210868 NA non-coding downstream 246941 40054723 ~ 40055218 (-)
G210994 NA non-coding upstream 64146 40371529 ~ 40372033 (-)
G211001 NA non-coding upstream 144859 40452242 ~ 40452572 (-)
G211025 NA non-coding upstream 191911 40499294 ~ 40500630 (-)
G211026 NA non-coding upstream 193816 40501199 ~ 40504302 (-)
G211029 NA non-coding upstream 204253 40511636 ~ 40512067 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 362104 39933116 ~ 39940055 (-)
atp8a1 atp8a1 other downstream 506216 39643544 ~ 39795943 (-)
bend4 bend4 other downstream 669983 39613715 ~ 39632176 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other downstream 761343 39527633 ~ 39540816 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 3097774 37165034 ~ 37204385 (-)
G210991 LOC103042126,LOC108416825 other upstream 53875 40361258 ~ 40363237 (-)
G210995 NA other upstream 65422 40372805 ~ 40378353 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other upstream 251301 40558684 ~ 40570148 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 851847 41159230 ~ 41219443 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other upstream 999563 41306946 ~ 41310751 (-)

Expression


Co-expression Network