LOC103043462 (sycp3,LOC103043462,LOC107666284,LOC107590858,LOC108269409)


Basic Information

Item Value
gene id LOC103043462
gene name sycp3,LOC103043462,LOC107666284,LOC107590858,LOC108269409
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40308494 ~ 40312741 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238081.3
agagTATAAATGTACATTCTTTTAGTATAATAAAGCAGTACATATGTACAGTAATTTACGGTGTTCTGCATGTTGTGTATTGGCTAATGCTAGGAATAAATTAATCCATTATACAGTGTATTAATAACCAGGCCAGTCATAACTTGCTTGAAGTTTGGGTTAAAGAAAAAGCTGCCTTCATAGTTTTTATACTAAAGTCACATAATTATAATTAACCAGCAGTTGGGTCAAAGCTGCCgtgtatttatattgtttttatacagttattaGTTAAAAAATACAGTCTTTAAATCTCATCTAGTTAAGACGCTGGGGGAGGTTGGGGGCCAGCCGGTGCTGTAGCTACAGGATCTCCCGCGCCTGGAGTTCAGAGCGACACACCAGTCAGAGCTGAGGGGAAATCAACTGAGaaaaATGGCATCATCAGGAAGAAAACAGAACAAGAAGTCAAAACCAACAGAAGGTCCTGCAGACATACAGGCTTTTGACTTCAATGTtgaagaggagaagaaaggTCTTAGTGGTTCTGATGATGAAGCTAGAGAAGAAACTCCCATTGTTGACAAACTGGGCAAGAAGAGATGCGGAGGTTCATTTGAGGAAGATGACGTAGGTGTAGGTGTTGGCAATGAAGTTCAGACAATGTTGGAAAAGTTTGGAGCTGACATCAGTAAAGCAATGCAGGCCAAAAGGAAGCGCTTAGAGACCTTCACCAAAAGCTCTCTGAAAGGGACCAACCAGAAAATAGAACAGCTGTGGAAAACCCAGCATAACCAGAGGCAGAAGCTAACGCAAGAGTACTCTCAGCAAGTGTTCTCTGTGCTGCAGCAGTGGGAAACTGATGTTCAGAAAACAGAAGAGCAAGAGGAGAAATTAAATAATTTGTTTAGACAGCAGCAGAAACTCTTCCAGCAAGCTCGAGTTGTGCAAAGCCAAAAAATGAAGTCCATAAAAGAGCTGTATGAACAGTTTGTCAAGAACATGGAGGAGATGGAGAAGAGCCATGAGGCTTTCCTCCAAGGAGCACAGATGGAGCTAAAAAAGGAGATGGCCTTATTGCAGAAAAAGATTATGATGGACACACAACAACAGGAGATGGCCACTGTACGGAAGTCCCTCCAGTCCATGCTGTTTTGAAGAGTAGATGATACACTGTTTATAGACCTGAAGTGCTTTCAGTGCTTATTTTGTCTTTCAGAATTCATAACTGTTATgtaatttgttcttttttatttatttactaattggAAATGTGTGCtgtgtatgttttatatataaattctgtatacagtacatatacaaaaatgtttCTTGTACTGAGTAAACTTTTTCCTTCCTCACAGtagattttcattttttcttttttttttttacatattttcgtACTTCTTTGAGTCACACAAAAGTGTTTGatctttttcataaaaaaagtaAGTATGGAATGTCTTGCAAAGACACTGTTAAACTGGACATGAGAACATGGCTAGATATGTTTATTGAGAGGTATTTTAATTCCAGTTTCTTGTTCAGATGGTAACTAttctaagttgtaaaaagtataaaatgtttaattcttGATTGATGTTTAAATTCTTGATCATAATGTTTTATGTGTATGAGTTTACTTTGAATTAGTAATGAAGTTAAGGTAAAAGCAATACTCTAGCTCTTATCACATTAAACAATATGAGCAGTT
>XM_022684129.1
TCTAATTGGCCTTAGAAATGGACAAGATATTAGGTCAATTTCAGCATTTGAAGTAACAAGACGGTTTTTAGTGTGTAAATCAAACACCGATTTACTGAAGGTTAGaaaaATGGCATCATCAGGAAGAAAACAGAACAAGAAGTCAAAACCAACAGAAGGTCCTGCAGACATACAGGCTTTTGACTTCAATGTtgaagaggagaagaaaggTCTTAGTGGTTCTGATGATGAAGCTAGAGAAGAAACTCCCATTGTTGACAAACTGGGCAAGAAGAGATGCGGAGGTTCATTTGAGGAAGATGACGTAGGTGTAGGTGTTGGCAATGAAGTTCAGACAATGTTGGAAAAGTTTGGAGCTGACATCAGTAAAGCAATGCAGGCCAAAAGGAAGCGCTTAGAGACCTTCACCAAAAGCTCTCTGAAAGGGACCAACCAGAAAATAGAACAGCTGTGGAAAACCCAGCATAACCAGAGGCAGAAGCTAACGCAAGAGTACTCTCAGCAAGTGTTCTCTGTGCTGCAGCAGTGGGAAACTGATGTTCAGAAAACAGAAGAGCAAGAGGAGAAATTAAATAATTTGTTTAGACAGCAGCAGAAACTCTTCCAGCAAGCTCGAGTTGTGCAAAGCCAAAAAATGAAGTCCATAAAAGAGCTGTATGAACAGTTTGTCAAGAACATGGAGGAGATGGAGAAGAGCCATGAGGCTTTCCTCCAAGGAGCACAGATGGAGCTAAAAAAGGAGATGGCCTTATTGCAGAAAAAGATTATGATGGACACACAACAACAGGAGATGGCCACTGTACGGAAGTCCCTCCAGTCCATGCTGTTTTGAAGAGTAGATGATACACTGTTTATAGACCTGAAGTGCTTTCAGTGCTTATTTTGTCTTTCAGAATTCATAACTGTTATgtaatttgttcttttttatttatttactaattggAAATGTGTGCtgtgtatgttttatatataaattctgtatacagtacatatacaaaaatgtttCTTGTACTGAGTAAACTTTTTCCTTCCTCACAGtagattttcattttttcttttttttttttacatattttcgtACTTCTTTGAGTCACACAAAAGTGTTTGatctttttcataaaaaaagtaAGTATGGAATGTCTTGCAAAGACACTGTTAAACTGGACATGAGAACATGGCTAGATATGTTTATTGAGAGGTATTTTAATTCCAGTTTCTTGTTCAGATGGTAACTAttctaagttgtaaaaagtataaaatgtttaattcttGATTGATGTTTAAATTCTTGATCATAATGTTTTATGTGTATGAGTTTACTTTGAATTAGTAATGAAGTTAAGGTAAAAGCAATACTCTAGCTCTTATCACATTAAACAATATGAGCAGTT
>XM_022684130.1
taacacataaataatatatatatatattgcagagTATAAATGTACATTCTTTTAGTATAATAAAGCAGTACATATGTACAGTAATTTACGGTGTTCTGCATGTTGTGTATTGGCTAATGCTAGGAATAAATTAATCCATTATACAGTGTATTAATAACCAGGCCAGTCATAACTTGCTTGAAGTTTGGGTTAAAGAAAAAGCTGCCTTCATAGTTTTTATACTAAAGTCACATAATTATAATTAACCAGCAGTTGGGTCAAAGCTGCCgtgtatttatattgtttttatacagttattaGTTAAAAAATACAGTCTTTAAATCTCATCTAGTTAAGACGCTGGGGGAGGTTGGGGGCCAGCCGGTGCTGTAGCTACAGGATCTCCCGCGCCTGGAGTTCAGAGCGACACACCAGTCAGAGCTGAGGGGAAATCAACTGAGaaaaATGGCATCATCAGGAAGAAAACAGAACAAGAAGTCAAAACCAACAGAAGGTCCTGCAGACATACAGGCTTTTGACTTCAATGTtgaagaggagaagaaaggTCTTAGTGGTTCTGATGATGAAGCTAGAGAAGAAACTCCCATTGTTGACAAACTGGGCAAGAAGAGATGCGGAGGTTCATTTGAGGAAGATGACGTAGGTGTAGGTGTTGGCAATGAAGTTCAGACAATGTTGGAAAAGTTTGGAGCTGACATCAGTAAAGCAATGCAGGCCAAAAGGAAGCGCTTAGAGACCTTCACCAAAAGCTCTCTGAAAGGGACCAACCAGAAAATAGAACAGCTGTGGAAAACCCAGCATAACCAGAGGCAGAAGCTAACGCAAGAGTACTCTCAGCAAGTGTTCTCTGTGCTGCAGCAGTGGGAAACTGATGTTCAGAAAACAGAAGAGCAAGAGGAGAAATTAAATAATTTGTTTAGACAGCAGCAGAAACTCTTCCAGCAAGCTCGAGTTGTGCAAAGCCAAAAAATGAAGTCCATAAAAGAGCTGTATGAACAGTTTGTCAAGAACATGGAGGAGATGGAGAAGAGCCATGAGGCTTTCCTCCAAGGAGCACAGATGGAGCTAAAAAAGGAGATGGCCTTATTGCAGAAAAAGATTATGATGGACACAGAGATGGCCACTGTACGGAAGTCCCTCCAGTCCATGCTGTTTTGAAGAGTAGATGATACACTGTTTATAGACCTGAAGTGCTTTCAGTGCTTATTTTGTCTTTCAGAATTCATAACTGTTATgtaatttgttcttttttatttatttactaattggAAATGTGTGCtgtgtatgttttatatataaattctgtatacagtacatatacaaaaatgtttCTTGTACTGAGTAAACTTTTTCCTTCCTCACAGtagattttcattttttcttttttttttttacatattttcgtACTTCTTTGAGTCACACAAAAGTGTTTGatctttttcataaaaaaagtaAGTATGGAATGTCTTGCAAAGACACTGTTAAACTGGACATGAGAACATGGCTAGATATGTTTATTGAGAGGTATTTTAATTCCAGTTTCTTGTTCAGATGGTAACTAttctaagttgtaaaaagtataaaatgtttaattcttGATTGATGTTTAAATTCTTGATCATAATGTTTTATGTGTATGAGTTTACTTTGAATTAGTAATGAAGTTAAGGTAAAAGCAATACTCTAGCTCTTATCACATTAAACAATATGAGCAGTT
>XM_022684131.1
agacaaaaaaaatctatgcatTTACATATGCTAGATTTCCAAAAGTCTCACTACACCTTCTCAGACAATGTAGATACAGACATAGACAAATGGTGCTTTAGTTTTAATGTCCAGTTCAAGTTATAAAATGCAGTTGGGATACACCAAAAGTGCAAATAGTAGCATTgagaaaaaaagtgagaaatgtTTGATAAATAGGAAGTTGTAACTGTTAGCTATGAGTGATATGATtaacacataaataatatatatatatattgcagagTATAAATGTACATTCTTTTAGTATAATAAAGCAGTACATATGTACAGTAATTTACGGTGTTCTGCATGTTGTGTATTGGCTAATGCTAGGAATAAATTAATCCATTATACAGTGTATTAATAACCAGGCCAGTCATAACTTGCTTGAAGTTTGGGTTAAAGAAAAAGCTGCCTTCATAGTTTTTATACTAAAGTCACATAATTATAATTAACCAGCAGTTGGGTCAAAGCTGCCgtgtatttatattgtttttatacagttattaGTTAAAAAATACAGTCTTTAAATCTCATCTAGTTAAGACGCTGGGGGAGGTTGGGGGCCAGCCGGTGCTGTAGCTACAGGATCTCCCGCGCCTGGAGTTCAGAGCGACACACCAGTCAGAGCTGAGGGGAAATCAACTGAGaaaaATGGCATCATCAGGAAGAAAACAGAACAAGAAGTCAAAACCAACAGAAGGTCCTGCAGACATACAGGCTTTTGACTTCAATGTtgaagaggagaagaaagAAACTCCCATTGTTGACAAACTGGGCAAGAAGAGATGCGGAGGTTCATTTGAGGAAGATGACGTAGGTGTAGGTGTTGGCAATGAAGTTCAGACAATGTTGGAAAAGTTTGGAGCTGACATCAGTAAAGCAATGCAGGCCAAAAGGAAGCGCTTAGAGACCTTCACCAAAAGCTCTCTGAAAGGGACCAACCAGAAAATAGAACAGCTGTGGAAAACCCAGCATAACCAGAGGCAGAAGCTAACGCAAGAGTACTCTCAGCAAGTGTTCTCTGTGCTGCAGCAGTGGGAAACTGATGTTCAGAAAACAGAAGAGCAAGAGGAGAAATTAAATAATTTGTTTAGACAGCAGCAGAAACTCTTCCAGCAAGCTCGAGTTGTGCAAAGCCAAAAAATGAAGTCCATAAAAGAGCTGTATGAACAGTTTGTCAAGAACATGGAGGAGATGGAGAAGAGCCATGAGGCTTTCCTCCAAGGAGCACAGATGGAGCTAAAAAAGGAGATGGCCTTATTGCAGAAAAAGATTATGATGGACACACAACAACAGGAGATGGCCACTGTACGGAAGTCCCTCCAGTCCATGCTGTTTTGAAGAGTAGATGATACACTGTTTATAGACCTGAAGTGCTTTCAGTGCTTATTTTGTCTTTCAGAATTCATAACTGTTATgtaatttgttcttttttatttatttactaattggAAATGTGTGCtgtgtatgttttatatataaattctgtatacagtacatatacaaaaatgtttCTTGTACTGAGTAAACTTTTTCCTTCCTCACAGtagattttcattttttcttttttttttttacatattttcgtACTTCTTTGAGTCACACAAAAGTGTTTGatctttttcataaaaaaagtaAGTATGGAATGTCTTGCAAAGACACTGTTAAACTGGACATGAGAACATGGCTAGATATGTTTATTGAGAGGTATTTTAATTCCAGTTTCTTGTTCAGATGGTAACTAttctaagttgtaaaaagtataaaatgtttaattcttGATTGATGTTTAAATTCTTGATCATAATGTTTTATGTGTATGAGTTTACTTTGAATTAGTAATGAAGTTAAGGTAAAAGCAATACTCTAGCTCTTATCACATTAAACAATATGAGCAGTT

Function

symbol description
sycp3 Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. Is expressed in germ line cell and reproductive system. Human ortholog(s) of this gene implicated in spermatogenic failure 4. Orthologous to several human genes including SYCP3 (synaptonemal complex protein 3).

NR:

description
synaptonemal complex protein 3-like isoform X1

GO: NA

KEGG:

id description
K19528 SYCP3; synaptonemal complex protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238081.3 False 1696 mRNA 0.37 9 40308494 40312480
XM_022684129.1 False 1391 mRNA 0.36 9 40308494 40312049
XM_022684130.1 False 1717 mRNA 0.36 9 40308494 40312510
XM_022684131.1 True 1924 mRNA 0.36 9 40308494 40312741

Neighbor

gene id symbol gene type direction distance location
LOC103042952 LOC103042952,LOC107695597,LOC107577899 coding downstream 1111 40302159 ~ 40307383 (-)
c24h15orf40 NA coding downstream 58952 40246606 ~ 40249542 (-)
cartpt cartpt,LOC107679585,LOC107574592,LOC107666283 coding downstream 78185 40228839 ~ 40230309 (-)
LOC103046604 LOC108418995,LOC108268792,LOC107753548,LOC107666287,LOC107716682 coding downstream 87760 40165500 ~ 40220734 (-)
LOC103029855 NA coding downstream 210534 40076837 ~ 40097960 (-)
actr6 actr6,arp6 coding upstream 143 40312884 ~ 40317812 (-)
gtse1 NA coding upstream 6048 40318789 ~ 40325440 (-)
LOC103045095 LOC103045095,LOC107590823,LOC107753557,LOC108268426,LOC106608917,LOC101062121 coding upstream 15098 40327839 ~ 40355276 (-)
LOC103028575 LOC108419324,LOC108269048,LOC107693229 coding upstream 257841 40570582 ~ 40582953 (-)
LOC103027945 NA coding upstream 271624 40584365 ~ 40590468 (-)
G210959 NA non-coding downstream 144944 40163333 ~ 40163550 (-)
G210949 NA non-coding downstream 170186 40137876 ~ 40138308 (-)
G210937 NA non-coding downstream 199571 40106604 ~ 40108923 (-)
G210934 NA non-coding downstream 233726 40072385 ~ 40074768 (-)
G210868 NA non-coding downstream 253276 40054723 ~ 40055218 (-)
G210994 NA non-coding upstream 58788 40371529 ~ 40372033 (-)
G211001 NA non-coding upstream 139501 40452242 ~ 40452572 (-)
G211025 NA non-coding upstream 186553 40499294 ~ 40500630 (-)
G211026 NA non-coding upstream 188458 40501199 ~ 40504302 (-)
G211029 NA non-coding upstream 198895 40511636 ~ 40512067 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 368439 39933116 ~ 39940055 (-)
atp8a1 atp8a1 other downstream 512551 39643544 ~ 39795943 (-)
bend4 bend4 other downstream 676318 39613715 ~ 39632176 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other downstream 767678 39527633 ~ 39540816 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 3104109 37165034 ~ 37204385 (-)
G210991 LOC103042126,LOC108416825 other upstream 48517 40361258 ~ 40363237 (-)
G210995 NA other upstream 60064 40372805 ~ 40378353 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other upstream 245943 40558684 ~ 40570148 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 846489 41159230 ~ 41219443 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other upstream 994205 41306946 ~ 41310751 (-)

Expression


Co-expression Network