actr6 (actr6,arp6)


Basic Information

Item Value
gene id actr6
gene name actr6,arp6
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40312884 ~ 40317812 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238082.3
GCTTAGCATCATACTGTAAGGCACATACACATTTGAAGGAAATGTGCTCTTGAATGTAAAGGCGATTTTTTAAATCCACttcactaaatataaaaaaatgcaaatatttagAATGTATGTTTATAATAAGCATGAAGACAATATCTTTACATGTCCGGTGCAGCAGGGGGCAGTAGCCGCAGTTATGCTGCTGATATAATGTTGGACTGGAGAAGAACAAGAGCTGAATACAGTTAAACTGCGTAAAGGCGCAGAAGCGCAGTCTCAGTTCCCACTGCAGAGAATGGAGTTTATTTAAGGAGTTTAATTCCATTAAAACACGCCTTGAATACTTTAACCCTGAATAACAGCTGCTGAAAATGACAACCCTCGTCCTGGATAACGGAGCTTACACAGCTAAGATCGGATACAGCCATGAGAAAGTCAGTGTTCTTCCTAATTGCCAATTTCGCTCCAAAACTCTGAGGCTAAAAACCTACACTGCCAATCAGCTGGATGAAATCAAGGATCCATCTGGCCTCTTCTATATTCTACCATTTCAGAAGGGTTATCTTGTTAACTGGGATGTGCAGCGTAAAGTGTGGGATCATCTGTTCggaaaagaaatgtttaagGTTGATTTTGCTGACACCAGCATAGTGATAACAGAGCCCTACTTCAACTTCACCTCAATTCAAGAGTCAATGAATGAGATTTTGTTTGAAGAGTACCAGTTTCAAGCAGCATTAAGAATCAATGCTGGATCTCTGAGTGGCCACAGATACTTCCAAGAGAACAATTCAGAGTTGTGCTGCATTGTGGTGGATAGTGGCTTTTCCTTCACACACATCATCCCTTACTGTAGAGGAAGGAAGATGAAGGATGGCATTTGCAGGATCAATGTAGGTGGAAAACTTCTCACCAACCACTTGAAAGAGATAATTTCTTACAGGCAGCTTCACGTAATGGATGAGACACATGTGATTAACCAAGTAAAGGAGGATGTGTGCTATGTATCTCAGGACTTCTACAAAGACATGGAGATCGCTCAGCTAAAAGGAGAAGAAAACATGGTGATGAAGGACTATGTACTACCAGATTTCAGTTCCATCAAAAAGGGCTTCTGTAAGCCTCGAGAGGAAATGAATTTCACAGGAAAGTATAAGACAGGGGAGCAGATCTTGAGGCTTACCAATGAGAGATTTGCAGTCCCAGAGATGCTCTTCCATCCTGCAGACATTGGAATCCAGGAGATGGGCATTCCAGAGGCTTTAGTCAACTCTATCAACAAAATGCCTGAAGAAATGCAGCCCCACTTCTACAATAATATTGTCTTGACAGGTGGTAACACCTTATTCCCTGGCTTTAGAGACCGGGTATACAAGGAAGTCCGTGCCCTCGCTCCTACAGAATTTGAGGTTTCTGTAGTACAGCCACAGAAtccAATCTGCTATGCATGGGAGGGAGGAAAGCTTTTAGCAGAAAATCCAGACTTTGAAGAGATGGTTGTCACACGAGACGATTATGAAGAGAATGGACATTTTATATGCGAGGAAAAGTTTGACATTTGACCTTCAAATAACTGCAGTAATATTACTCTGTTTAATGTTTCTTCTGACATCTTTTGTGGCAGAAATTATGGTGTACTGCAACTATGAATCTGATAGTTGTTAAATTTGTAAGGTGTTTTGTATTGTGCTCAATGCCTAAAATATGTGaggaaataaatatgttttcatatgttt

Function

symbol description
actr6 Predicted to enable nucleosome binding activity. Predicted to be involved in histone exchange. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of Swr1 complex. Orthologous to human ACTR6 (actin related protein 6).
arp6 Predicted to enable nucleosome binding activity. Involved in histone exchange. Located in chromatin and nucleus. Is expressed in organism. Orthologous to human ACTR6 (actin related protein 6).

NR:

description
actin-related protein 6

GO: NA

KEGG:

id description
K11662 ACTR6, ARP6; actin-related protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238082.3 True 1724 mRNA 0.40 11 40312884 40317812

Neighbor

gene id symbol gene type direction distance location
LOC103043462 sycp3,LOC103043462,LOC107666284,LOC107590858,LOC108269409 coding downstream 143 40308494 ~ 40312741 (-)
LOC103042952 LOC103042952,LOC107695597,LOC107577899 coding downstream 5501 40302159 ~ 40307383 (-)
c24h15orf40 NA coding downstream 63342 40246606 ~ 40249542 (-)
cartpt cartpt,LOC107679585,LOC107574592,LOC107666283 coding downstream 82575 40228839 ~ 40230309 (-)
LOC103046604 LOC108418995,LOC108268792,LOC107753548,LOC107666287,LOC107716682 coding downstream 92150 40165500 ~ 40220734 (-)
gtse1 NA coding upstream 977 40318789 ~ 40325440 (-)
LOC103045095 LOC103045095,LOC107590823,LOC107753557,LOC108268426,LOC106608917,LOC101062121 coding upstream 10027 40327839 ~ 40355276 (-)
LOC103028575 LOC108419324,LOC108269048,LOC107693229 coding upstream 252770 40570582 ~ 40582953 (-)
LOC103027945 NA coding upstream 266553 40584365 ~ 40590468 (-)
dnm1l dnm1l,LOC107716704 coding upstream 369980 40687792 ~ 40704331 (-)
G210959 NA non-coding downstream 149334 40163333 ~ 40163550 (-)
G210949 NA non-coding downstream 174576 40137876 ~ 40138308 (-)
G210937 NA non-coding downstream 203961 40106604 ~ 40108923 (-)
G210934 NA non-coding downstream 238116 40072385 ~ 40074768 (-)
G210868 NA non-coding downstream 257666 40054723 ~ 40055218 (-)
G210994 NA non-coding upstream 53717 40371529 ~ 40372033 (-)
G211001 NA non-coding upstream 134430 40452242 ~ 40452572 (-)
G211025 NA non-coding upstream 181482 40499294 ~ 40500630 (-)
G211026 NA non-coding upstream 183387 40501199 ~ 40504302 (-)
G211029 NA non-coding upstream 193824 40511636 ~ 40512067 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 372829 39933116 ~ 39940055 (-)
atp8a1 atp8a1 other downstream 516941 39643544 ~ 39795943 (-)
bend4 bend4 other downstream 680708 39613715 ~ 39632176 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other downstream 772068 39527633 ~ 39540816 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 3108499 37165034 ~ 37204385 (-)
G210991 LOC103042126,LOC108416825 other upstream 43446 40361258 ~ 40363237 (-)
G210995 NA other upstream 54993 40372805 ~ 40378353 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other upstream 240872 40558684 ~ 40570148 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 841418 41159230 ~ 41219443 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other upstream 989134 41306946 ~ 41310751 (-)

Expression


Co-expression Network