psma1 (psma1,LOC108439057,LOC107748950)


Basic Information

Item Value
gene id psma1
gene name psma1,LOC108439057,LOC107748950
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28483491 ~ 28489434 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241085.3
AATCAGTGACTCTGGGATCCTCTGGTTTGGTCTGAAGAGCAGAGCCGAGCGGAGCTGAGAGAGAGCTGCAGCGCGGAGATGTTTCGAAACCAGTATGACAATGATGTCACAGTTTGGAGTCCTcagGGGCGGATCCATCAGATCGAGTATGCGATGGAGGCGGTGAAGCAGGGATCTGCCACTGTGGGGCTCAAGTCACGCTCTCATGCTGTTCTGGTAGCTTTAAAGagaGCACAGTCTGAATTAGCAGCCCATCAGAAGAAAATTCTCCATGTTGATAACCACATTGGCATTTCTATCGCTGGACTGACCGCTGATGCCCGGTTGCTGTGCAACTTCATGCGTCAGGAGTGTCTGGACTCCAGATTTGTCTTTGACAGGCCTCTTCCAGTATCTCGCCTCGTCTCGCTCATCGGGAGCAAAACCCAGATTCCTACACAGCGGTACGGGCGCAGGCCATATGGTGTCGGGCTCCTGATTGCAGGTTATGATGACATGGGACCCCACATCTTCCAGACCTGCCCCTCTGCTAATTATTTTGACTGTAAGGCCATGTCTATAGGTGCTCGCTCACAGTCTGCTCGCACGTACCTGGAGAGACACATGGACGGCTTCTCTGACTGTAACCTGAATGAGCTGGTAAAGCACGGTCTCTGTGCACTCAGAGAgactctccctgctgaacaggATCTCACCACCAAGAACGTCTCCATTGGAATTGTGGGGAAGGACATGGAGTTCACCATCTATGACGATGATGATGTTGCTCCTTTCCTTGAAGGATTAGAGGAGAGACCTCAGAGAAAGGTGGCTCAGCCTGCAGATGATGCTCCTCCAGCAGCATCTGATGAACCCATGGAGCATTGAGGAGAGACCCCTCTGAAGTGAAAGGGGAGCTGCAACATTTACCCtgagtaaaataaatctgtcacaacaacagtaactgtatGACTTTGACTTTCTATCTCCATAGAGTTCGATTcaataaatgtttcttttttctgaaa

Function

symbol description
psma1 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA1 (proteasome 20S subunit alpha 1).

NR:

description
PREDICTED: proteasome subunit alpha type-1

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02725 PSMA1; 20S proteasome subunit alpha 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241085.3 True 1007 mRNA 0.50 10 28483491 28489434

Neighbor

gene id symbol gene type direction distance location
rpl27a rpl27a,LOC107687759,LOC108439055 coding downstream 6637 28472521 ~ 28476854 (-)
nup160 nup160,LOC107555692,LOC107756876 coding downstream 115534 28310866 ~ 28367957 (-)
adat1 NA coding downstream 290426 28177140 ~ 28193065 (-)
tmem231 tmem231 coding downstream 320138 28156767 ~ 28163353 (-)
LOC111195771 NA coding downstream 1331191 27146036 ~ 27152300 (-)
LOC103040620 LOC108443074 coding upstream 113456 28602890 ~ 28622098 (-)
LOC103041235 NA coding upstream 179296 28668730 ~ 28683502 (-)
gal galn,gal,LOC108443068,LOC108268663 coding upstream 204732 28694166 ~ 28701575 (-)
LOC111195773 NA coding upstream 245752 28735186 ~ 28742593 (-)
LOC103034116 NA coding upstream 382406 28871840 ~ 28888885 (-)
G208702 flnc,LOC108439053,LOC108439063 non-coding downstream 19973 28461528 ~ 28463518 (-)
G208683 LOC108439052 non-coding downstream 62410 28418635 ~ 28421081 (-)
G208665 NA non-coding downstream 102123 28373091 ~ 28381368 (-)
G208662 NA non-coding downstream 126406 28356614 ~ 28357085 (-)
G208649 NA non-coding downstream 191280 28290609 ~ 28292211 (-)
LOC111195846 NA non-coding upstream 1917 28491351 ~ 28492233 (-)
LOC111195852 NA non-coding upstream 7017 28496451 ~ 28497291 (-)
LOC111195780 NA non-coding upstream 8457 28497891 ~ 28498363 (-)
G208716 NA non-coding upstream 8996 28498430 ~ 28498683 (-)
G208778 NA non-coding upstream 155226 28644660 ~ 28646623 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 215122 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 1827307 26655443 ~ 26656184 (-)
G208046 NA other downstream 2270650 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2365859 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2395076 26086651 ~ 26088415 (-)
LOC107197304 NA other upstream 172749 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 293649 28783083 ~ 28860774 (-)
G209090 NA other upstream 1534527 30023961 ~ 30024550 (-)
G209127 NA other upstream 1673023 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1712097 30201531 ~ 30318216 (-)

Expression


Co-expression Network