rpl27a (rpl27a,LOC107687759,LOC108439055)


Basic Information

Item Value
gene id rpl27a
gene name rpl27a,LOC107687759,LOC108439055
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 28472521 ~ 28476854 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241086.2
aacagtaaaaacagaaacactgcGAGCCATTGTCCCGCAGAGGCGGGGGCGGAGCTTAACATACAGTCTCGGACTTACTCGCGAGATTTAGcgccgctctctctctttccacttCCCGCTCCAAGATGCCTACCAAGACGAGCAAGACCAGGAAGCTCCGTGGACATGTGAGCCACGGCCACGGTCGAGTGGGTAAACACAGAAAGCACCCTGGAGGCCGCGGTAATGCCGGTGGCATGCATCACCATAGAATCAACTTCGACAAGTACCACCCTGGTTACTTTGGAAAGGTTGGCATGAGGCACTATCACTTGAAGAGAAACACCGTTTTTTGCCCAACCATCAACCTGGACAAGCTCTGGACTCTAGTTAGTGAGCAGACCAGAGTGAACCATGCCAAGAAGCTTGATGGCCCAGCACCAGTCATCGACGTTGTTCGTGCTGGTTACTTCAAAGTGCTTGGCAAAGGCAAGCTGCCCAAGCAGCCGGTCATCGTGAAGGCCAAGTTCTTCAGCCGACGGGCAGAGGAAAAAATCAAGGGTGTCGGAGGAGCTTGTGTACTGACGGCATAAGCAGGCGCTGGTTTTGCataataaacaatgttaaaaattGAA

Function

symbol description
rpl27a Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of large ribosomal subunit. Orthologous to human RPL27A (ribosomal protein L27a).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02900 RP-L27Ae, RPL27A; large subunit ribosomal protein L27Ae

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241086.2 True 614 mRNA 0.52 5 28472521 28476854

Neighbor

gene id symbol gene type direction distance location
nup160 nup160,LOC107555692,LOC107756876 coding downstream 104564 28310866 ~ 28367957 (-)
adat1 NA coding downstream 279456 28177140 ~ 28193065 (-)
tmem231 tmem231 coding downstream 309168 28156767 ~ 28163353 (-)
LOC103031696 ano1,LOC105911290,LOC106573096 coding downstream 1238931 27026494 ~ 27233590 (-)
psma1 psma1,LOC108439057,LOC107748950 coding upstream 6637 28483491 ~ 28489434 (-)
LOC103040620 LOC108443074 coding upstream 126036 28602890 ~ 28622098 (-)
LOC103041235 NA coding upstream 191876 28668730 ~ 28683502 (-)
gal galn,gal,LOC108443068,LOC108268663 coding upstream 217312 28694166 ~ 28701575 (-)
LOC111195773 NA coding upstream 258332 28735186 ~ 28742593 (-)
G208702 flnc,LOC108439053,LOC108439063 non-coding downstream 9003 28461528 ~ 28463518 (-)
G208683 LOC108439052 non-coding downstream 51440 28418635 ~ 28421081 (-)
G208665 NA non-coding downstream 91153 28373091 ~ 28381368 (-)
G208662 NA non-coding downstream 115436 28356614 ~ 28357085 (-)
G208649 NA non-coding downstream 180310 28290609 ~ 28292211 (-)
LOC111195846 NA non-coding upstream 14497 28491351 ~ 28492233 (-)
LOC111195852 NA non-coding upstream 19597 28496451 ~ 28497291 (-)
LOC111195780 NA non-coding upstream 21037 28497891 ~ 28498363 (-)
G208716 NA non-coding upstream 21576 28498430 ~ 28498683 (-)
G208778 NA non-coding upstream 167806 28644660 ~ 28646623 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 204152 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 1816337 26655443 ~ 26656184 (-)
G208046 NA other downstream 2259680 26212058 ~ 26212841 (-)
LOC111195835 NA other downstream 2354889 26103487 ~ 26117632 (-)
LOC111195761 NA other downstream 2384106 26086651 ~ 26088415 (-)
LOC107197304 NA other upstream 185329 28662183 ~ 28695700 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other upstream 306229 28783083 ~ 28860774 (-)
G209090 NA other upstream 1547107 30023961 ~ 30024550 (-)
G209127 NA other upstream 1685603 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1724677 30201531 ~ 30318216 (-)

Expression


Co-expression Network