gpm6a (gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175)


Basic Information

Item Value
gene id gpm6a
gene name gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34676126 ~ 34708056 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245511.3
gagggagagtgtgtgagagtgagagagagcgagagcgaaagagagaccCAGCCTCAGCCTCTATTGTGATCTGCAGGCGGGGGATTCAGATAAAAAAGGCTATTTCTCGGCCCGGACGCAACGCTGGTCACCGCAACAGAGTCCACCAGAACCGGCCAGGACATGGAGGAAGACATGGATGAGGGACAGACCCAGAAAGgATGTACAGAGTGTTGTCTGAAGTGTTTGCGGGGAATCCCATACCCATCCCTGATTGCCACTATCCTGCTGTACGCAGGCGTGGCACTGTTCTGTGGTTGTGGTCATGAAGCTCTTACCGGCACGGTCACCATCCTGCAGAACTACTTCGATGTGATCAGAGCGCCTGGAGACTCCCTGGATGTCTTTACCATGATTGACATTATTAAGTACGTGATTTACGGCATCGCCTCAGCTTTCTTCGTATACGGGATCCTGCTGATGGTGGAGGGTTTCTTCACCAGTGGAGCCATTAAGGACCTGTACGGAGACTTCAAAATCACCACGTGTGGACGCTGCGTTAGCGCATGGTTCATCATGCTGACGTACATCTTCATGCTGGCCTGGCTCGGAGTGACGGCCTTCACCGCTTTGCCCGTCTTCATGTACTTCAACATCTGGACCATCTGCCAGAACACCACGGTGCTGGAGGGAGCCAGCCTGTGCCTGGACCCGCGCCAGTTTGGCGTTGTGACCATTGGTCAGGAGAAGACAGTGTGTGCAGGATCAGAGAaattctttaaaatgtgtgaATCAAAAGAGCTGGACATGACCTTCCacctgtttgtgtgtgcgcTGGCCGGCGCTGGAGCTGCAGTAATCGCTATGATCCATTACCTGATGGTGCTCTCAGCGAACTGGGCCTACGTGAAGGACGCGTGTAAGATGCAGAAGTATGAGGACTGCAAGTCCAAGGAGGAGCAGGAGCTGCACGACATCCACTCCACCCGCTCCAAAGAGCGCCTCAACGCCTACACATAAGACCCGCGCAGCGCCAGCGGACCCGCAGTGCTCTCACTTCCTGTATAGGGGGAGTTTTGGCACTGGTGCTGTCCAACAGGAGTGTCACATGACCAACCCCATGGCCAACCCCTTACCTCTGGCacaagcattattattattattattattattattattattatcttcttTACTAATCTTCAGTAGAAGTAGCTGTAGTGTCGTAGTTTTTTACAgtattgtatgttttttaattttctcaagaGATTGTGcaagttcttttatttttggacGTCAATCACGGTATGACTTTATgcaattttatttgatttgatttaatttaattttcttaaacATCAGTATTCACACCCTCCTTATTTCGCGGGTCGGTTGTGGGGTATAAAGCACATTTCTTCATGTGTGTTCGTCTCCGGTGATCTCATTTTCTCAAGCACTTCACACATGAAatgaaaatttgaaaaaaaaagaatactttttaaatttttatttatttacttttttaaatcagtgaaaGATTTTTTGGCCCGAAAGCAGCAGATCGCACGCCGATTCTGCATTATTttggaaacagaaaaaaaacagaaaaacaaaaatgaaagaataagAAACGGCAAATGTACcataaagtgtttatttattatttttctacagATATCATTACGAATAAGAGACAGTAAAATGTTACAGGTTGTTTGCTGTGCTCGCTTGCACAGCCCGCCAGTTTTGGGGCATTGTTATCGTCTTCAGAGGGAGAGTAAACTGTGTGTTGCTCTTTGTGGGCGGAGTCTTACCATCTCCTATTAAAAACCTATTAAAAGAGACCTGTGTTTTAATCATGTCTCTATGGGACGTGTCTATAGCATGAGGTGATTTACAAACAACTGTAGCTTTCctgcagttaaaaaaagaacagaaaatgtGTTGGGAGTTAATGATGCTTTATCAACCTTGTAAAGGAAGTTGGTGGAGAGATGCAAGGGCAACCTtataatggaagtcaatgaagAGATGctttaatacacttttaatggaagtcaatgagCCAGTGCTTCAGTATGCTTATAATGGAAGCCAGTAGGAGTATGGTTTAACACACTTGTTATGGAAGTCAATGGGTTGATGTTTCAGCATGCTCTTAAATGAAATCAATAGGCTGATCCTTTGGAACCTTATAATGGAAGTCATCATGATTGTAATAGAAGTCACTGGTTGAGTGCTTCAACATCCAACGTTATTATAGAAGTCAGTAGGAAGACTCTGTAGTAAGCCTATAAGTAAAACCAATGGAAATCTGCTTCCACCAATGCATCTATTGACTTCCATTAGTGCAAATGAGATTCAGGTTGtcatgttttctgtttttttctaaatacaGGGGCTCATTTTAAAAGTACAGTTTGTTGTAATTAGCCACACGCTACAGACACGTTATATAGAGAGCACAAAAACAGTGAAACAGCGGAGTGTTCCGTTAAAACCTCCTTCTTGAGTAATAATGCAACAATAAGCTGTACTGGCCGACTGCCACACATGCACAAAGCTACAGTGTTATAACCCCCTGCTTTTATTTTCCTACAGACGATAGAGAAGGTAAGTAGATCGTTCTGCTTTTATTTTCAGGGTTTTTATTTCTGCGTTTGTAAATAGTCATTCTGTAAATGTAtacatgtattgtatgtaaGCACTTCGATTTCAGGTGAATTCGTATACGAGAATAATCAAAACTGACATTCCACGTTACTgaaaggggggaggggggtggaggACGATGAGGAAGAGGGGGTGGCGttgtttaacagaaaaaaaaataagatgaaaCAATTCAGGCGATGTAGTGTTTGTGGTCTCTAtggctatgttcagactgccgGCCAATCGGATTGTTTTCTGAAATCAGATCTGCTTAGATGAGTGTCCACACTGTTATTTACGTTCTGATAAGTGATGTCCGGACACAAGCatgaatttttttaaatccaatgTCGCAGTGTGAATAACCCAAAAGACATATTGAAATCTGATTAGTCATATTGTGAATGACAGAAATGAAAAATTTGAAATCTGATTTGTTCGGTTTGACTGGAAAGACTTGTTGAAATCCACCTGACGCATCTGACCTAAAGGCACATTGAAATTTCAGTCGAATTCCAAAAAATTAGCACTCTCACAATGTGAATGATGCAAACGACACATTGAGATCCGAAATTGAAATCTTTGTGCCTAGACCGTACCAACTAAGATGCATCTTTTTAAGTCTCCACCTCAAGTCATTTATTGCAAATCTAATGCGGTTTATGTCTGTCCACACTATTAAATATCAAAGTCTGGATACAGTGCAGAGACATCAAACATCTTGCCCGGATTTGTGCaggcagtctgaacatagcctttTTTGTTTTGGTAAGTGTTTGTTTTTGGATTTCGTTTCTATAAAAGGGGAAAATCACAACAGAATCAACTATTTACAGAGGTTATAACGCTATTTACCTTGATGACGGTGAAGATGTCACATGTTGTCTTGCTTACGAGTCATTATGCTATTGAGACTATGGACTATGGAGGTGTCTTATCATTCTTTTTACTGCCTGGCAAGTcatgttctgtcagtgtttctaAGAGCTAGTTTCGTGCACTTATATTTGACCATTGtgtgagctctctctctctcagtgtaagTGCATTGGGATTTCAGCTGGCCAGTTGGATCCCCCGTAACGTTAGGTAAAGACTGTGAATTCTAGGTGTTATTTGTGGCATGGTCATGCATTTAATGGTAATCGTTTTTACTGgatacaagaaaaataaaaaataaaaaaagacgaataataaaaataatttgaaaaaaaaagaaaaaaaaaaaggaatcaaaaatttcatttcacatttttctGAGTTTGTTTCCCGCGACTGTCTTGCTGGGTCATCCCGACTCTCCCCGTGTGCAGTAATTGGACCTCTATGCTGACTGCATTGCTCTGAATCTCCCGCTGTTTGATGGTAGTGtttgatttgtatctgtttagtTTGTGGTGAATCTATAACTACTGCCCTCAGTCCGACCAATCTCAGCCCTGCTCCTCTATCCCTCAttccccacctctctctctctctctctcgccctgtATTAGTCTTTTGTACACTCACTAAAGAATGCTTAGTCGCAGGCTGTACCATGATTCTGTTTTGTACATAAATGTGCCAACCGCTTGACAGTGGCTTTTCTGATCTGTAGGGACAAACTGcttgcataaataaatacactggtGTTCTTGTTAATAAA

Function

symbol description
gpm6aa Predicted to be involved in neuron projection development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axonal growth cone; filopodium; and neuronal cell body. Is expressed in immature eye; nervous system; and neural tube. Orthologous to human GPM6A (glycoprotein M6A).

NR:

description
PREDICTED: neuronal membrane glycoprotein M6-a

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245511.3 True 4279 mRNA 0.42 7 34676126 34708056

Neighbor

gene id symbol gene type direction distance location
LOC103036564 LOC103036564,LOC108425002 coding downstream 1919 34659490 ~ 34674207 (-)
tmem144 NA coding downstream 446245 34221879 ~ 34229881 (-)
fam198b fam198b coding downstream 455586 34211565 ~ 34220540 (-)
pdgfc pdgfc coding downstream 674515 33909109 ~ 34001611 (-)
LOC111195843 NA coding downstream 821720 33853069 ~ 33854406 (-)
spata4 spata4 coding upstream 19106 34727162 ~ 34731836 (-)
aga aga coding upstream 66006 34774062 ~ 34785667 (-)
ctso NA coding upstream 439575 35147631 ~ 35167225 (-)
rnf130 rnf130,LOC103033921,LOC107723823 coding upstream 460484 35168540 ~ 35263408 (-)
LOC111195785 NA coding upstream 1981543 36689599 ~ 36691324 (-)
G209814 NA non-coding downstream 42910 34632785 ~ 34633216 (-)
G209793 NA non-coding downstream 62730 34610036 ~ 34613396 (-)
G209798 pitx2,LOC100136798,LOC107699310 non-coding downstream 109608 34563439 ~ 34566518 (-)
G209682 NA non-coding downstream 289491 34386145 ~ 34386635 (-)
LOC111195783 NA non-coding downstream 487497 34170756 ~ 34188629 (-)
LOC111195784 NA non-coding upstream 417107 35125163 ~ 35145580 (-)
G209872 NA non-coding upstream 431394 35139450 ~ 35140107 (-)
G209894 NA non-coding upstream 600263 35308319 ~ 35308594 (-)
G209924 NA non-coding upstream 939346 35647402 ~ 35648209 (-)
G209929 NA non-coding upstream 994733 35702789 ~ 35703454 (-)
egf NA other downstream 19642 34620461 ~ 34656484 (-)
G209660 NA other downstream 401533 34234918 ~ 34274593 (-)
G209640 NA other downstream 463277 34170767 ~ 34212849 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 1071137 33602099 ~ 33604989 (-)
G209458 NA other downstream 1720041 32955615 ~ 32956085 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other upstream 1715 34709771 ~ 34759091 (-)
G210059 NA other upstream 2002364 36710420 ~ 36710743 (-)
c24h12orf73 NA other upstream 2101251 36809307 ~ 36810496 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 2456978 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 4819577 39527633 ~ 39540816 (-)

Expression


Co-expression Network