LOC103036564 (LOC103036564,LOC108425002)


Basic Information

Item Value
gene id LOC103036564
gene name LOC103036564,LOC108425002
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34659490 ~ 34674207 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245512.3
agagaaaagaagacagagaaagacagagcggGGTAGAAAAGAGAAGATAGGAAGAGGCGGGGGTGGTTGTTAAATAAAGAGATGGAGGGGCTATGTGTTGGGCGGAGACTGGTGGTGGTCACATGATGGGGGAAACCTTTTCAGGATTAGCCTGTTAGCTGATTAGCATATTCACAGCTTATCTCCCCCACAACAACTCTCACTTTTTCCACTTCAAGTATTcgaaggatttgattgcattcagccacattggagctTCATTAAGATCGGGTTCTGGTGCTGAACACTCAGACACTCCAACgctactggatggagctccgtCAACACTCTAGCAAGCCTTTTATACCCCTCCAACCCAAACCAGGCATTGAAAAAGATGAACTTTGGGTCATGTGGTCATGGCTGTTGTAGAAAGTCTGATTCTATTGGTCAATGATTCTTCTCTATGGACATTATACAAGCTGTATGTGCATTTAAACACCTGTGCCAGCAGGGGGCGCACTTTAATGCAGGTGAATGAACACGTAACTGCTAATATTAGGAGCAGTTCAAACAGTTTTGAAGGCGTAAAGATATTCGGACACTTGATTGGTTAGGCTAATCATTCTAACGTTAAACAACATTGCTCCTCTAACCACACCCACTCAAACCCTACCTTCCCCTACCTTTTACCCTGTCCTGTCCAAAATTTTGGATATATGAAGTTATTTGGACACCTAATTGGCCAATCTGGCCTCTCAATGTAACCACACCAACTTTAGCCTCGCCTTCACACCCACCCTTTCTATGGCCCTGTCCCTCACATGACTTCCGTGACCTACTCAGCCTGGAGAAATCCTCTGGGTAATCCGTGCTCTCCTGCACTCACCCCGCCCAATCCCATCCAATCCCGTCCCCTCCACCTGTCCAGCCCGAGCCCGGAGACGAGCCGGTCACCTGAAGACGAGAGCCGACCGGAGAACCGAGCCCCGGGAATGCCCAGCTCCTGCTTCCCCTCGCTCCCCCACAGGCCCGGCAGATCCCTGAGCGTCGGTGGGTGAGCGCTGGCACGGCGGGTGGgcgctgatgtgtgtgtgtgagtgtttgtgccACTCAGTGAAGGATGCAGCGTCTCCTGGTGGTTcaggtgctgctgctgtgctgttgcCGTTTGGTCCAGCCGTTCTGCCCGTCGCAGTGTACCTGTGTGTTCCACTCCCGCAGTGACGGAACCGGGACCAGGACCGTCCTTTGCAATGACCCGGACATGTCCGACATCCCGGTGAACGTCCCGGTGGACACAGTGAAGCTGCGGGTAGAGAAAACGGCCGTGCGTCGGATCCCCACCGAGGCCTTTTACTACCTGACGGAGCTGCAGTACCTGTGGATCACTTACAACTCCATCACCTCCGTGGACCAGGGCAGCTTCTACAACCTGAAGGTCCTGCACGAGCTGCGGCTGGACGGCAACCAGATCGCCACCTTCCCCTGGGAGTCTCTAAGGGAGATGCCTAGCCTGCGGACCCTCGACCTGCACAACAACCGCCTCACCAGCATCCCCGTGGAGGCGGCGCCTTACCTGGTCAACATCACCTACCTGGACATCTCCAGCAACAAGCTCACCACCCTGCCCTCTGACCTGGTGGACATCTGGCCCCCGTTCTCAGGAATGCCGCCCACCTTCAACGCTTCCCAGAAGATTGTGCTGGGTCTCCAGGACAACGCGTGGTTCTGCGATTGCAGGATCTCCAAACTCATCGAGTTGTCCAAGATGACCGACATCCCCGTGGTTCTGATGGACCAGTATTTGTCCTGCAGTGGCCCAGAGAACCTGGCTGGGGTTCTGTTCCAACGAGCGGAACTGGACCAGTGCGTCAAACCGTCAGTGATGACCTCAGCCACTAAAATCACGTCATCGCTCGGCAGTAACGTTCTCCTCCGCTGTGACGCCACGGGATATCCTACCCCCACCCTCATGTGGAGTAAAAGGGATAGGTCTGCTTTTAATAACACAGTTGTGCAAGAATCTCCTGGTGAAGGTGTCCGGTGGTCCATCCTCAGCTTGCACGGGATCGTGGTAAAGGATGCTGGCGTGTACCGCTGCAAGGCCAAGAACGTCGCAGGAAATGCGGAGGCCTTCATCACCCTCTCCCTGGCTGGGATGGACTCTACAACCGTGTCCCCGCCACCGAGCATCACCAAGAAGCCTGACGAGAATCCGGGACTGGTTACCCAGTCTCCACCTCCAGTCACTGGCACTGTGGTTCTGACACCTACTACTACTTTCATCCCAACGACCTCCAAACCGCCCATGACCACAGTATCACCTATGTCAAGCCGGATGAACCTTGGCCCGGGTGGAGGCATTCAGAGGTCCCCACCTGCTGGAGATACACCGGCTAAGGTTCAGCAAGGAAAGGACGTCAAAAGTCTGAGTGGGAGCAACAAAACGAGGAAAAAGGGGAGTCCCTACATCAAGGATATTGAAGTGGTGGAAGAGACTGGAGATACGGTGGTTGTGTTATGGACAAGTGAGGATTTGCCTAGCGACACACCCTTGTCTGTGGCGTACTTCCCGTACGATGCGGAAGACAGCAAGGAAACGTTGGAAACTGAGGTTGGGTTGGGTAAACTTCTTTTGGAGAACCTGTTTCCCAACCAGGCCTACACGGTCTGCTTGGTTGCCAAAGGTTACATGTCTGGAAAGGGTCAGTGTGTGAATTTTAGTACTCTGGACGCCGTTGCGGACGATGGCCAGAACAAGTGGCTAATGATAGCGAGTGGGATTGCTTGCGCTGTTGCACTCCCACTTATTATTCTTCTCCTTTATAAGATTGTATCGCTCTACTGCAAAGGTAGAAGCGGTAGAAGTGGTGGAACGGATGAAGACCTCTCGAAAGAGACATATGTAAAGTTTGAGACCCTCACAATGAAACAGAGGACATTGAACGGACCAGGGAATGACCTCTGGGCTCGACGGCAGACGCAAGAATCGGAAAGGATGCTACTGTGTTCACGATCAAGTATAGACTCCCAAATGACCTACAAGAGCGACAGTTCACGGTCGGAGTACCTATGCTAGCTCTGCGTGAGTTAGCTACTAggaattaccatatttttctgaAACAGTGTTGCCTGTGCTCCAACTCCACTGGTTGCCGAATAAAGACAATGATTGACAATAAATGAAATGAGCATATTGGATGTATTAGTGCTTAAGATGTCCTAGATCACACTTGTCCTTCTACAACCAACCTGCTAGCACAGGAAATggttatacatttatttacaggatgtgttttttttacaggaagTTTGTAATCAGTTGCAATCTCTCTCTGGGTGATGGACATGAGGTAGCTTTCTGTTTAAATATGAGAATATCTTGTATACCAATGACTTTATGTAAGCTTGGAAGCCTTCAGTTCCATAGAAATAAAGCCAAAACTAATCGGCCATGTTGAAGTCTGTGCAGTAAAGAGCAGAGGCGGAGCCAGACTTGCCTTCATTGACTTTACAGTGCAGCCTGAAGGACCAGAAGCAGGACTTCAGTATTCATAGTTATTTCAGTAAGTGAAACTTCCCAACACTACAAGTGCAGTTCATGTTGTTTTTCTTAGCAAACTTAGATTTTGAGGTCAAGTTATagcaaattaaaaagaaaatatgggCAGGAATGTTTTGACATTAAACAGTATGGAGATGGGCGGAGCTAAACGTCATACTGCAACCACccagcagaggcactagaccTGGTGGCTTTGCTTCTGAGAAACCATGCTTATATAAAGTCATTGATCTGTACTAATACTGTGATGAGACATAAGTAATTGGATGCAGAATGTGGGAAACATCTACTATAGGCTACTCTTGAGTTTGTTGATGTGCTAACACTGTCAATGTATTGCCTTATACGAGTCTGTTTTAATTCCTgtttatttcttcctttttttaatggacggttttatttattgtacattttaagATTAAACATTAAAGATTTTTTATGATGTAAAATATTCATGTGGAGatgtaaatactgcatattcttccctatttatacattatagtatctcaacataaaatataatttaacctTTACATTAAATGGTTTGGGCTAAAATGTCTTCAATATCTTTATGCTTTAAAGTCTGTTTAATTCAAAGAATCTCTTATTTGAAGTATATATAACTTTGTGGGGGTGAACAGACTACATATATAGTGTAACTGTATCAACAGTATAATCTGTATAAACAATATTGCAAAGCCTTGCCAACCACACATATACATGTATTATGTCCAGTTTTGCCATGTCTTTTGTGATCAATCTGCCATCTTTTTCAACCagataaactttaaaaaatggatttagctgttttctttctttctctgattAAGTCTAAATTCCCTACATtgataattctgtgtttttatgttctgTTTAGGCAGTATTAACATTTGCAAACTTTGTTCGCTGTAGCTAAAGATATTTAAGGACTTGTTTGGGTGATGTTATCCTGTTGGTTCAAGATTTATGAGATTATATAGTAATTTTGAGGTATTTacacagatttaaaaataatcttaGTTTAACCTTTAGCTTGCTCCTCTTGAGGCAGTGTTTAGTCTGTTTAGAATCATTATTCTGTTTTAAAAGCTACTCCCCTTTTTAACTTTGTTACACTGGTTGCCACTGGCAGCAACACAAGCCAACAGCATGATCCATCCACCCCCATATTTAACAGTTGGACAGGAGATAGTTTCATgagataaaaaaca

Function

NR:

description
leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3

GO: NA

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245512.3 True 4758 mRNA 0.47 4 34659490 34674207

Neighbor

gene id symbol gene type direction distance location
tmem144 NA coding downstream 429609 34221879 ~ 34229881 (-)
fam198b fam198b coding downstream 438950 34211565 ~ 34220540 (-)
pdgfc pdgfc coding downstream 657879 33909109 ~ 34001611 (-)
LOC111195843 NA coding downstream 805084 33853069 ~ 33854406 (-)
mrpl18 mrpl18 coding downstream 814539 33840987 ~ 33844951 (-)
gpm6a gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175 coding upstream 1919 34676126 ~ 34708056 (-)
spata4 spata4 coding upstream 52955 34727162 ~ 34731836 (-)
aga aga coding upstream 99855 34774062 ~ 34785667 (-)
ctso NA coding upstream 473424 35147631 ~ 35167225 (-)
rnf130 rnf130,LOC103033921,LOC107723823 coding upstream 494333 35168540 ~ 35263408 (-)
G209814 NA non-coding downstream 26274 34632785 ~ 34633216 (-)
G209793 NA non-coding downstream 46094 34610036 ~ 34613396 (-)
G209798 pitx2,LOC100136798,LOC107699310 non-coding downstream 92972 34563439 ~ 34566518 (-)
G209682 NA non-coding downstream 272855 34386145 ~ 34386635 (-)
LOC111195783 NA non-coding downstream 470861 34170756 ~ 34188629 (-)
LOC111195784 NA non-coding upstream 450956 35125163 ~ 35145580 (-)
G209872 NA non-coding upstream 465243 35139450 ~ 35140107 (-)
G209894 NA non-coding upstream 634112 35308319 ~ 35308594 (-)
G209924 NA non-coding upstream 973195 35647402 ~ 35648209 (-)
G209929 NA non-coding upstream 1028582 35702789 ~ 35703454 (-)
egf NA other downstream 3006 34620461 ~ 34656484 (-)
G209660 NA other downstream 384897 34234918 ~ 34274593 (-)
G209640 NA other downstream 446641 34170767 ~ 34212849 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 1054501 33602099 ~ 33604989 (-)
G209458 NA other downstream 1703405 32955615 ~ 32956085 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other upstream 35564 34709771 ~ 34759091 (-)
G210059 NA other upstream 2036213 36710420 ~ 36710743 (-)
c24h12orf73 NA other upstream 2135100 36809307 ~ 36810496 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 2490827 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 4853426 39527633 ~ 39540816 (-)

Expression


Co-expression Network