LOC103043395 (adh5,LOC103043395,LOC108425010,LOC107680974,LOC107730660,LOC107696300,LOC107586060,LOC107756510)


Basic Information

Item Value
gene id LOC103043395
gene name adh5,LOC103043395,LOC108425010,LOC107680974,LOC107730660,LOC107696300,LOC107586060,LOC107756510
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 32602209 ~ 32609908 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245534.2
GATTGGTAAAaagcgattttttttttgttcccgcCCTCTTCTCTGTGCAGCAGCTGAACATGGCCACGGCTGGACAAGTCATCAAGTGTAAGGCGGCAGTGGCATGGGAGGCAGGAAAGCCCCTGtctgtggaggaggtggaggtggcACCACCTAAAGCCCATGAAGTCAGAATTAAGgTCCATGCTACAGGAGTGTGCCACACTGATGCCTATACCCTGAGTGGGAGTGACCCTGAGGGGCTGTTTCCTGTGATCCTGGGACACGAGGGTGGTGGAACGGTTGAGAGTGTAGGAGAGGGAGTCACCAAGTTTAAGCCAGGGGACACAGTCATTCCTCTGTACATCCCGCAGTGTGAAGAATGCAAGTTTTGTAAAAACCCCAAAACCAACCTCTGCCAGAAAATCAGGGTGACCCAGGGCCAGGGCCTGATGCCTGATAAGACCTCCAGGTTTACCTGTAAGGGAAAGCCAGTCTTCCACTTTATGGGCACCAGCACTTTCTCCGAGTACACCGTGGTGGCCGAGATATCCCTGGCTAAAGTGGACCCGAGCGCTCCGCTGGATAAAGTGTGCCTGCTGGGCTGTGGCATCTCTACTGGATATGGAGCTGCTCTCAACACTGCTAAGGTTGAAGCCGGCTCTACCTGTGCTGTGTTTGGTTTGGGAGCGGTGGGTCTCGCTGCTATTATGGGCTGCAAGGCCGCCGGTGCCACCAGGATCATCGGCATCGACATCAACCCGGACAAATTTGAACTCTCCAAAAAGTTCGGAGCCACGGAGTTCATAAACCCGAAAGACCACAGCAAACCTGTACAGGAGGTGCTGGTGGAGATGACCGATGGGGGAGTGGACTACTCGTTTGAGTGCATCGGCAATGTGGGCATCATGAGAGCTGCACTGGAGGCGTGCCATAAGGGCTGGGGGACGAGTGTGATCATCGGTGTAGCCGGTGCAGGGCAGGAGATCTCTACACGCCCATTCCAGTTGGTCACAGGACGCACATGGAAGGGAACAGCTTTCGGAGGCTGGAAGAGTGTAGAAAGTGTTCCTAAACTAGTGGACGACTACATGAACAAGAAGCTGATGGTGGATGAGTTTGTGACCCACACAATGCCTTTCGCTCAGATTAACGAAGCCTTTGACCTGATGCATGCTGGGAAGAGCATCCGAGCCGTCCTGACCTTCTAAATCCAGCCTGGAAAACCACCAAGCCTTAATTCAACCAGTCGTGGAGCAATCACCTTAGTGATTAGTGTCTAATCTTTCAGCACTTATACTGTTAATTACCATTTTTGATTACATGATAATGTGAAGAGTCAATAAAATTGATTCCTGGATG

Function

symbol description
adh5 Predicted to enable S-(hydroxymethyl)glutathione dehydrogenase activity; alcohol dehydrogenase activity, zinc-dependent; and zinc ion binding activity. Predicted to be involved in formaldehyde catabolic process. Predicted to act upstream of or within ethanol oxidation. Predicted to be active in cytosol. Is expressed in several structures, including blastodisc; central nervous system; digestive system; pleuroperitoneal region; and trunk. Human ortholog(s) of this gene implicated in AMED syndrome and asthma. Orthologous to human ADH5 (alcohol dehydrogenase 5 (class III), chi polypeptide).

NR:

description
alcohol dehydrogenase class-3

GO:

id name namespace
GO:0006069 ethanol oxidation biological_process
GO:0008270 zinc ion binding molecular_function
GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity molecular_function

KEGG:

id description
K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245534.2 True 1341 mRNA 0.52 9 32602209 32609908

Neighbor

gene id symbol gene type direction distance location
LOC103043705 LOC107680975,LOC107730661,LOC107696296 coding downstream 1198 32592697 ~ 32601011 (-)
LOC103044229 LOC103044229,LOC108430909 coding downstream 485645 32076591 ~ 32116564 (-)
rapgef2 rapgef2 coding downstream 1219687 31290134 ~ 31382522 (-)
LOC103032100 NA coding downstream 1319628 31277177 ~ 31282581 (-)
LOC103031775 NA coding downstream 1335254 31264571 ~ 31266955 (-)
LOC111195776 NA coding upstream 5012 32614920 ~ 32626576 (-)
grhpr grhpr,grhpra,LOC107550900,LOC107756505,LOC107730677,LOC105908753,LOC107680659 coding upstream 1190194 33800102 ~ 33812322 (-)
mrpl18 mrpl18 coding upstream 1231079 33840987 ~ 33844951 (-)
LOC111195843 NA coding upstream 1243161 33853069 ~ 33854406 (-)
pdgfc pdgfc coding upstream 1299201 33909109 ~ 34001611 (-)
G209329 NA non-coding downstream 856215 31745585 ~ 31745994 (-)
G209304 NA non-coding downstream 1082933 31519032 ~ 31519276 (-)
G209301 NA non-coding downstream 1086012 31515959 ~ 31516197 (-)
G209261 NA non-coding downstream 1316849 31285152 ~ 31285360 (-)
G209254 NA non-coding downstream 1329861 31271836 ~ 31272348 (-)
LOC111195779 NA non-coding upstream 90153 32700061 ~ 32701470 (-)
LOC111195778 NA non-coding upstream 93540 32703448 ~ 32704069 (-)
G209406 NA non-coding upstream 195391 32805299 ~ 32807680 (-)
G209433 NA non-coding upstream 218954 32828862 ~ 32829063 (-)
G209440 NA non-coding upstream 275782 32885690 ~ 32886052 (-)
G209303 NA other downstream 1084317 31517433 ~ 31517892 (-)
G209256 NA other downstream 1327807 31273868 ~ 31274402 (-)
G209224 NA other downstream 1502348 31098844 ~ 31099861 (-)
fstl5 fstl5,LOC107550871 other downstream 1798853 30513907 ~ 30803356 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other downstream 2283993 30201531 ~ 30318216 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other upstream 19386 32629294 ~ 32639929 (-)
G209458 NA other upstream 345707 32955615 ~ 32956085 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other upstream 992191 33602099 ~ 33604989 (-)
G209640 NA other upstream 1560859 34170767 ~ 34212849 (-)
G209660 NA other upstream 1625010 34234918 ~ 34274593 (-)

Expression


Co-expression Network