LOC103043705 (LOC107680975,LOC107730661,LOC107696296)


Basic Information

Item Value
gene id LOC103043705
gene name LOC107680975,LOC107730661,LOC107696296
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 32592697 ~ 32601011 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007245535.3
ctatcgTCGTCGTGCGCAGCACCGCCCTCTTCATCATCTCCGCTGTCAGCAGCCCTGGCCCCGCCCCCTGTTAGTGTCTAAAGATGGCGGCTGCTGAGCTGGATATAAactcaaaaacactgaattctgaagaagagaagaaTTGTGTTTCTGGGCAAGGGCAAGAAGTTGCAATTCCTGAGGATTACATTAAACATCCACTACAAaacagatggGCCCTGTGGTTCttcaaaaatgacaaaagcaAAACCTGGCAAGCCAACCTGCAGCTCATCTCAAAGTTCGACACAGTTGAAGACTTTTGGGCGCTATACAATCACATTCAGCTTTCCAGCAATTTAATATCTGGGTGTGACTACTCACTCTTTAAGGATGGTATCGAGCCTATGTGGGAGGATGAGAGGAACAAGAAAGGAGGCCGCTGGCTCATCACTCTCTCCAAACAGCAACGAAGAGCCGACCTCGACCGCTTCTGGCTGGAGACGCTGCTGTGCCTCGTGGGGGAAGCGTTTGATGACCACAGTGATGACGTCTGTGGTGCGGTGGTCAACATTCGGACGAAAGGAGACAAGATATCAATATGGACAACAGACTACGAAAACAAAGACGCAATTGTGCACATCGGGAGGGTGTATAAGGCCCGATTAGGTGTCCCACCTAAAGTCATCATCGGGTATCAGTCGCATGCCGACACAGCTACCAAGAGCGGCTCCACCACTAAGAACAAGTTTGTGGTGTAAGAACTGTCCCAGTACACACATTTGTTACAGTAACTGTGACAGAAGTCCTGTTCTCCAGATGAAACCAAAGTTACACCTGAGAAGAGTGAAGAGCGAGAGGAGAATAACAAGGATCAGCACACTACAATAAGTTAATTAGTGTTGcggttttttgtttgttttgttttttaggtgGGGGTGTTGTTTGACATAAGCAGGtggaaacatgcaaaaaaaatagtgtcttatatacatttacacatgTATAAATGCAGAAccattttaatatttctttgagtttatttgtttgctttCTTATACTTTTGAGTTGTTGCTGATATGTGGATgagttttattatgtttacaaCATAGTTTATTTCTAATTAATATTGAACAAATAGATAGTGGTAAAACATGatgaacataaatatatttttcgaTTTTTGGATACGTTGGCcaagatacaataaaaaaaaaaaaaaaaaaaaacaggaacaatGTAATCTTGTATTTGTCCATTTGGACCCTGTTGTAAATGTGTATGATTGACTTTTCTATTACACTGCATTTTGTAATCCTAGTgtttatattgaaatatttgaTAATTATATTACAACATATGAGTTCTGTGGGCTTTATTAAAAGATCATTTTTAAAGCCATGACTGTTTATAAAAGAatgagaataataaaataagattttgttgtatgtattatatacaactgtaaataaacctgtaTAGTGTGTTATCTTAACCCA

Function

NR:

description
PREDICTED: eukaryotic translation initiation factor 4E-1A-like

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006417 regulation of translation biological_process
GO:0005845 mRNA cap binding complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016281 eukaryotic translation initiation factor 4F complex cellular_component
GO:0000340 RNA 7-methylguanosine cap binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03259 EIF4E; translation initiation factor 4E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007245535.3 True 1478 mRNA 0.39 8 32592697 32601011

Neighbor

gene id symbol gene type direction distance location
LOC103044229 LOC103044229,LOC108430909 coding downstream 476133 32076591 ~ 32116564 (-)
rapgef2 rapgef2 coding downstream 1210175 31290134 ~ 31382522 (-)
LOC103032100 NA coding downstream 1310116 31277177 ~ 31282581 (-)
LOC103031775 NA coding downstream 1325742 31264571 ~ 31266955 (-)
LOC103031457 NA coding downstream 1331834 31254347 ~ 31260863 (-)
LOC103043395 adh5,LOC103043395,LOC108425010,LOC107680974,LOC107730660,LOC107696300,LOC107586060,LOC107756510 coding upstream 1198 32602209 ~ 32609908 (-)
LOC111195776 NA coding upstream 13909 32614920 ~ 32626576 (-)
grhpr grhpr,grhpra,LOC107550900,LOC107756505,LOC107730677,LOC105908753,LOC107680659 coding upstream 1199091 33800102 ~ 33812322 (-)
mrpl18 mrpl18 coding upstream 1239976 33840987 ~ 33844951 (-)
LOC111195843 NA coding upstream 1252058 33853069 ~ 33854406 (-)
G209329 NA non-coding downstream 846703 31745585 ~ 31745994 (-)
G209304 NA non-coding downstream 1073421 31519032 ~ 31519276 (-)
G209301 NA non-coding downstream 1076500 31515959 ~ 31516197 (-)
G209261 NA non-coding downstream 1307337 31285152 ~ 31285360 (-)
G209254 NA non-coding downstream 1320349 31271836 ~ 31272348 (-)
LOC111195779 NA non-coding upstream 99050 32700061 ~ 32701470 (-)
LOC111195778 NA non-coding upstream 102437 32703448 ~ 32704069 (-)
G209406 NA non-coding upstream 204288 32805299 ~ 32807680 (-)
G209433 NA non-coding upstream 227851 32828862 ~ 32829063 (-)
G209440 NA non-coding upstream 284679 32885690 ~ 32886052 (-)
G209303 NA other downstream 1074805 31517433 ~ 31517892 (-)
G209256 NA other downstream 1318295 31273868 ~ 31274402 (-)
G209224 NA other downstream 1492836 31098844 ~ 31099861 (-)
fstl5 fstl5,LOC107550871 other downstream 1789341 30513907 ~ 30803356 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other downstream 2274481 30201531 ~ 30318216 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other upstream 28283 32629294 ~ 32639929 (-)
G209458 NA other upstream 354604 32955615 ~ 32956085 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other upstream 1001088 33602099 ~ 33604989 (-)
G209640 NA other upstream 1569756 34170767 ~ 34212849 (-)
G209660 NA other upstream 1633907 34234918 ~ 34274593 (-)

Expression


Co-expression Network