LOC103033496 (sfxn5b,LOC103033496,LOC108269334,LOC108418389,LOC107680572,LOC107730655,LOC107676508,LOC107756498,LOC105909219)


Basic Information

Item Value
gene id LOC103033496
gene name sfxn5b,LOC103033496,LOC108269334,LOC108418389,LOC107680572,LOC107730655,LOC107676508,LOC107756498,LOC105909219
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39572801 ~ 39593767 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246364.3
GGGGGAAAAAACTACATCTCCCACATTCCTTTGCGGCTGATTGCTTCACGAGTTTCGTACTCGAGTTGACTCTTTAAAATTCCGTTTCATGAGGCTTTTCATTATTTAACAGCACTCCGGCGCGGCTGGGATGGCTGAGTCTGCTGTTTGTCCTGCTTTTCAGCTGGGGAGACCGCAGTATGACCAGAGCTCCTTCCTCGGCAGGTTCAGACACTTTGTTGACATCATCGACCCCAGAACTCTTTTTGTatcagagGCTCGCTTGAAGGAATGTGTTGCACTCCTAGACGATTTTAAACATGGAACTCTCCCTCCTGGAACAACAGCCGAACAGcTGTGGGAGGCTCAGAAAGTGAAGCAGGCTATTATTCACCCTGACACTGGACAGAAGATCTTCATGCCATTTCGCATGTCAGgTTACGTCCCATTTGGAACACCAATTGTGGTCGGCCTACTCCTTCCAAACCAGACTCTGGCAACCACTGTGTTCTGGCAGTGGTTAAACCAGAGTCATAACGCCTGTGTGAACTACGCCAACCGCAATGCCACAAAGCCCACACCAACCTCCAGGTTTATACAGGGATACCTGGGAGCTGTCACGAGCGCTGTCTCTATTGCGGTGGGTTTGAACGTGCTCATCGAGAAATCCAGGAAATTTAGCCCAGCCACTCGGCTCATCATCCAGAGATTCGTCCCCTTCCCTGCTGTGGCCAGCGCTAACATCTGTAATGTGGCCCTAATGAGACACAACGAGCTCTCAGAGGGAATTGACGTGCTGGACAGCAACGGGAATGTGGTGGGCTCCTCAAAAATAGCTGCCAAACatgcACTGATGGAGACAGCTTTTACACGAGTGGTCCTACCATTGCCTATCTTTGTCCTCCCACCAATGATCATGGCCTACCTGGAGAAGCGTCCGCTGTTAAAGGCTCATCGCAGGCTCGTGCTTCCTGTTCACAGCCTGGTGTGTCTGGCTGTGTTCGGCCTGTCGCTTCCACTGGCCATCAGCCTCTTCCCACAGATGTCTGAGATTGAGGCGTCTCACCTTGAGCCGGAAATCGCCATGGCAACAGATTGCAAGGTGCTGACCTATAACAAGGGACTGTGATggaaacagacaaacagaacaAGGCCGCGAGAAAAGAGAAGGAAGTGGAGAGAAAAACAGGGAATGAAAAGCAGAAGGCAAATTATTCTCCCTTTAAGCTGCTGCCGTCAACAAAATCCTGAGCTCGTGTAGCAAGACGGCTGCAGTGGATTGATGTGGGATTAAACTGTAGTCTTGGAGCAATACTTACATCTGACAAACTACCTTAACCTTATTTGTCAAGCCATTAATCTGTTTCTGAATTTACCAGATGATtagtaatcaataatcaatgtATTTCATGCaatattattaactttacaaTGTGAAAAGGCCTTACACTTTATAACATTATATACTAGGCCTGTTTATAGAGAATGCACAGCAGTGATGTTCAATTTATATTACTTGGCTAGTATGCAAGAACTTTTATTAATGTATGCAGATTATGTTGTGCTGATATTAACTGAAGGCTTGGATACACTGCAGTGACCATATAGTTCAGAAATCTACTGTAGAAACACCagttctttaaaatgtattttagtttcAATGGGCACCCATTCTTAATAGACATTGTGATCACCTCCTTGTTTGTACACCCCTTAACAATTCTATCCTTTCCTCTTATTCTtcagtggtcaggaccccacaggaccaccacagatcaggtattatttgggtggtggtgtgttgggttagtgtgtgttgtgtgctggTACATGTGGATCAGACATAACAGTGCTGCTGGACCTTCTAGAGAAATCAATCTACTATATAAGCTTTGCCCAGcttatgtaataatatatggGCATGTGCATCCAAGAAGAAAATGATTACCTAATGATTAAAAGAAGGCAGTAGAAGGCATACTATTTTAAAGGCACAGATATGCTGTAAAGATGTGGTAGTATTAAAGATTCAGCAGTATGTGCCTCACATTTGTGCCAAAACTCTGCTATAAGTGTAATTCAGAGAGTATTGTCCTTAGCCAGGTTTGACCCATACTTATGAAGGCAGCAGCATAGGTTAATTCATTTGATCcattaaatactaaaatgtgaTGTCTTGTATGAGACTACAGTAAAAACCAGTaccaaataattacattatagcACACCCAGCTTAGTGCAGCCAGGCCTTTAACGCATGTACAGAAGATTTATTACACGGTGCAcaagttattcactgtatagtttttaataatgttgcCTTTAATAGGTTGATAACCTTTATATGTCAACTAATGCCTGCATTAATTTTTACCTGCTGTAACTTTAGAAAACACAGTTTGGGCATTTCGAACACTTgtgttttttaagaaatgtaagaTTTTAGAACCCAGTATTTTTAGCTGAATGTCAGTTTGTGACCCTTTTTTCAGAACTGTGAATTGAGTATGTCTGCAATTTTCTTATTGGTTGTAATTTGCACTTAtgaaataacacattttaatcagattgtttaataaaaataaatatgtttagagGTTTAAAGCACAGAAGGTGATGCAA

Function

symbol description
sfxn5b Predicted to enable citrate transmembrane transporter activity. Predicted to be involved in citrate transport and mitochondrial transmembrane transport. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human SFXN5 (sideroflexin 5).

NR:

description
sideroflexin-5-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K23503 SFXN5; sideroflexin-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246364.3 True 2601 mRNA 0.43 14 39572801 39593767

Neighbor

gene id symbol gene type direction distance location
ttc9c ttc9c coding downstream 7614 39555871 ~ 39565187 (-)
ubxn1 ubxn1,LOC103356237 coding downstream 59869 39509067 ~ 39512932 (-)
LOC103037815 LOC103037815,LOC107680588 coding downstream 93384 39475557 ~ 39479417 (-)
LOC103038656 NA coding downstream 125806 39436676 ~ 39446995 (-)
LOC103038965 rom1,rom1b,LOC108442594,LOC107601507,LOC107741443,LOC107680615,LOC107579621 coding downstream 136776 39429829 ~ 39436025 (-)
LOC103033813 LOC108418404 coding upstream 2670 39596437 ~ 39612646 (-)
slc30a9 slc30a9,LOC107756435,LOC107680574,LOC107550859 coding upstream 231546 39825313 ~ 39835771 (-)
LOC103030807 NA coding upstream 242530 39836297 ~ 39842575 (-)
LOC103025209 adam19,LOC103025209 coding upstream 250834 39844601 ~ 39879453 (-)
LOC103024693 LOC103024693,LOC108418564 coding upstream 288917 39882684 ~ 39886837 (-)
G210772 LOC108418277,LOC108268893 non-coding downstream 68395 39503698 ~ 39504406 (-)
G210764 scyl1,ganab,LOC107741476,LOC107756491,LOC107601512 non-coding downstream 71868 39463107 ~ 39500933 (-)
G210752 scyl1 non-coding downstream 97447 39471582 ~ 39475354 (-)
G210749 NA non-coding downstream 103938 39381940 ~ 39468863 (-)
G210607 NA non-coding downstream 428370 39140107 ~ 39144431 (-)
G210799 grxcr1,si:dkey-109l4.6,LOC102787492 non-coding upstream 219572 39813339 ~ 39813564 (-)
G210800 NA non-coding upstream 222857 39816624 ~ 39819903 (-)
G210873 NA non-coding upstream 441796 40035563 ~ 40036100 (-)
G210868 NA non-coding upstream 460956 40054723 ~ 40055218 (-)
G210934 NA non-coding upstream 478618 40072385 ~ 40074768 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other downstream 31985 39527633 ~ 39540816 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 2368416 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 2762305 36809307 ~ 36810496 (-)
G210059 NA other downstream 2862058 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 4813710 34709771 ~ 34759091 (-)
bend4 bend4 other upstream 19948 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 49777 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 339349 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 767491 40361258 ~ 40363237 (-)
G210995 NA other upstream 779038 40372805 ~ 40378353 (-)

Expression


Co-expression Network