ttc9c (ttc9c)


Basic Information

Item Value
gene id ttc9c
gene name ttc9c
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39555871 ~ 39565187 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246370.3
CACTAAAGGCGAAGAGCAAAAAAACACCCAGTGCTTTACCCACTTTCACTAAGAACCCAAACAAACCCCTTTCCCGAGGCTCTCCGCTCCCTTACCGTCTCAGCACACACACCAATGGACCACAAGCCTtcagatgctgctgctgcagagggAAGCCTGGAGGAGGAGAGCTGCTCAGCTTCATGCTCTGGGGCCTCTGGAGGCTACAGCTCCAAAGTGGAAGCCCAGTTAACGGACGCTGTGCGGTTAAAAACAGAGGGGAATGCGTTTTATCGTGAGAAGAACATGCGTCCCGCAATTGGACGTTATCACCGTGCCTTGCTTATACTTCGTGGCCTTGACTCAGATGTGACATCATCCCTGAAAGGGTTTGGGCCCCAGTTACCGCCCCTCACCCCAGAGCAAGAAGATCTTCTCAGGAGCACACAGATAGACTGCTATAACAACCTAGCAGCATGCTTACTGCAGCGAGAAGTTGTAGACTATGCACGTGTGCAGGAGTACAGTCTAAAGGTGCTGCACTGGAGGCCTGGAGATGTTAAAGCCCTGTACAGAGCTGGAGTGGCCACACTGGAGCTGGGTGATGCTCAAACTGCACGTCAGTACCTCCTCCAGGCCAGCAGAGGGAAACCTAATGATGCTAATGTAAAGAAACAGCTCCAGCGAGTGGATGAGAGGCTCAGCAAAGACTACCAGAAGGAGAAGGCCCTCTACAAAGGCATGTTCAGCAAGCAGAAACaaggagaagaggaagaagcaaATGGGAATCCCCAAAAAGAACCATGAAGAGCTCTGAAGGTGTGTtcttaataaaagaaataggaAGACAACAGATAGGATTAAAGAGGTGAATGTTTACCAAAATAATTCTCGGGTATATGTTGCCCTGTGGTATGGAAATCAAGCCAAGATTGAATGTGAAAGAGAGTGGACTGTACTGAGAGGCAGTTTGGATGGTAACTGCACTAGCTAAAGGCCTTTTAGTCCACTGATTATGGCTTCAACTGTTATCAGTCTGGTTCTATTCAGGAGGATGTTTCTTATGTGTTTAAGTTTTGTCTGCAGATGAAAGGTTGttctgacacttttttttttttcatttgtataataaatattttttggtcCCTTTA
>XM_022684076.1
CACTAAAGGCGAAGAGCAAAAAAACACCCAGTGCTTTACCCACTTTCACTAAGAACCCAAACAAACCCCTTTCCCGAGGCTCTCCGCTCCCTTACCGTCTCAGCACACACACCAATGGACCACAAGCCTtcagatgctgctgctgcagagggAAGCCTGGAGGAGGAGAGCTGCTCAGCTTCATGCTCTGGGGCCTCTGGAGGCTACAGCTCCAAAGTGGAAGCCCAGTTAACGGACGCTGTGCGGTTAAAAACAGAGGGGAATGCGTTTTATCGTGAGAAGAACATGCGTCCCGCAATTGGACGTTATCACCGTGCCTTGCTTATACTTCGTGGCCTTGACTCAGATGTGACATCATCCCTGAAAGGGTTTGGGCCCCAGTTACCGCCCCTCACCCCAGAGCAAGAAGATCTTCTCAGGAGCACACAGATAGACTGCTATAACAACCTAGCAGCATGCTTACTGCAGCGAGAAGTTGTAGACTATGCACGTGTGCAGGAGTACAGTCTAAAGGTGCTGCACTGGAGGCCTGGAGATGTTAAAGCCCTGTACAGAGCTGGAGTGGCCACACTGGAGCTGGGTGATGCTCAAACTGCACGTCAGTACCTCCTCCAGGCCAGCAGAGGGAAACCTAATGATGCTAATGTAAAGAAACAGCTCCAGCGAGTGGATGAGAGGCTCAGCAAAGACTACCAGAAGGAGAAGGCCCTCTACAAAGGCATGTTCAGCAAGCAGAAACaaggagaagaggaagaagcaaATGGGAATCCCCAAAAAGAACCATGAAGAGCTCTGAAGctaCAACACATCTACAGTCTTCCAGTTTAGACAGACCCTTCAGTAGCAACACCACTGGTATAAATgtgttctacactgtaaaatacgGTTTAAAAGCTACGTGTGAATATTGCACAGTCCtaacagcactggaaaaaattaCAGATTATATCCAAGGTTTTGAGTGTGAAAAGGGCTTTAATACTAACTCTAAAAACTAAACAGCAGGTAATAAAAGTC

Function

symbol description
ttc9c Acts upstream of or within cilium assembly; determination of heart left/right asymmetry; and otolith morphogenesis. Orthologous to human TTC9C (tetratricopeptide repeat domain 9C).

NR:

description
PREDICTED: tetratricopeptide repeat protein 9C

GO: NA

KEGG:

id description
K24930 TTC9; tetratricopeptide repeat protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246370.3 True 1130 mRNA 0.47 4 39560751 39565187
XM_022684076.1 False 1017 mRNA 0.48 5 39555871 39565187

Neighbor

gene id symbol gene type direction distance location
ubxn1 ubxn1,LOC103356237 coding downstream 42939 39509067 ~ 39512932 (-)
LOC103037815 LOC103037815,LOC107680588 coding downstream 76454 39475557 ~ 39479417 (-)
LOC103038656 NA coding downstream 108876 39436676 ~ 39446995 (-)
LOC103038965 rom1,rom1b,LOC108442594,LOC107601507,LOC107741443,LOC107680615,LOC107579621 coding downstream 119846 39429829 ~ 39436025 (-)
LOC103039284 LOC103039284,LOC108442595 coding downstream 127775 39402546 ~ 39428096 (-)
LOC103033496 sfxn5b,LOC103033496,LOC108269334,LOC108418389,LOC107680572,LOC107730655,LOC107676508,LOC107756498,LOC105909219 coding upstream 7614 39572801 ~ 39593767 (-)
LOC103033813 LOC108418404 coding upstream 31250 39596437 ~ 39612646 (-)
slc30a9 slc30a9,LOC107756435,LOC107680574,LOC107550859 coding upstream 260126 39825313 ~ 39835771 (-)
LOC103030807 NA coding upstream 271110 39836297 ~ 39842575 (-)
LOC103025209 adam19,LOC103025209 coding upstream 279414 39844601 ~ 39879453 (-)
G210772 LOC108418277,LOC108268893 non-coding downstream 51465 39503698 ~ 39504406 (-)
G210764 scyl1,ganab,LOC107741476,LOC107756491,LOC107601512 non-coding downstream 54938 39463107 ~ 39500933 (-)
G210752 scyl1 non-coding downstream 80517 39471582 ~ 39475354 (-)
G210749 NA non-coding downstream 87008 39381940 ~ 39468863 (-)
G210607 NA non-coding downstream 411440 39140107 ~ 39144431 (-)
G210799 grxcr1,si:dkey-109l4.6,LOC102787492 non-coding upstream 248152 39813339 ~ 39813564 (-)
G210800 NA non-coding upstream 251437 39816624 ~ 39819903 (-)
G210873 NA non-coding upstream 470376 40035563 ~ 40036100 (-)
G210868 NA non-coding upstream 489536 40054723 ~ 40055218 (-)
G210934 NA non-coding upstream 507198 40072385 ~ 40074768 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other downstream 15055 39527633 ~ 39540816 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 2351486 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 2745375 36809307 ~ 36810496 (-)
G210059 NA other downstream 2845128 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 4796780 34709771 ~ 34759091 (-)
bend4 bend4 other upstream 48528 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 78357 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 367929 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 796071 40361258 ~ 40363237 (-)
G210995 NA other upstream 807618 40372805 ~ 40378353 (-)

Expression


Co-expression Network