ubxn1 (ubxn1,LOC103356237)


Basic Information

Item Value
gene id ubxn1
gene name ubxn1,LOC103356237
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39509067 ~ 39512932 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246376.3
TAGTTGCTGCTGCGCGAATTGTCCTGCAGTGCTTTCCGTAGAGCAGTGTGGAGGGGAGACCGTGCAGATTCCAGTTAACCATGGCGGAGTTTACAACGTTAGAAAGCCTGCTGGAGATGGGCTTCGACAGAAACAGAGCGGAGAAGGCTGTAGCACATACTGGCAACCAGGGCATTGAGAGAGCTATGGACTGGCTAATGGAACACGAGAATGATCCAGACATAGACGAGCCCTACGTCCCACCAGCAGGGAATGTTCTAGGCTCACCAGAGCAAGAGAGCCCATCCCAGCCTGCAACAGAACCTATTATCTCTCCTGATGGGGAGATACTAGAGGGAGATTCTAAGCGACCAATGactgaggaggagaagaaggagcaGGTTAAGAGGCTTGAAGAGTTGATGAGGGTGAAAcaggaggagagaagagagagggagcgacaGGACGAGGTGGACAGGGAAAAGCAGAGAAGGAAGCAAGGCCAGGAGCTGCAGCAGGTCCGACAGAAGCTTCAGGAGGATGAAATGAAGAAGCTGGCTGATGATCggaggagagagaaaatggaGGACAAAATGGCTAAGCAGAGGGTCAAAGAGAAGATTGCACGTGACCGGGAAGAACGAGCACGAAAGTTTGGAGGGAGCTCTTCTAGTACATCACTGTCATctcccacttctgacaccacTCCCCAGTCTCCACCTGAGAGCCAGGGTCCTCCTCCAGCCAAGAAAGACTATGATGAATGTCGGATACAGGTGAGGCTCCTGGACGGTTCTGCACTGACGACAGTTTTTAAAGCCCAGGAGCCTCTGGCAGCAGTCAGGGTGTACGTGCAGATGAACAGCTCTGAGAGCCAAGACTTTACCCTACTCTCTCCTTACCCACGCCGCGTCTATACAGACCTCGACATGGAGAAACCTCTGAGTGAGCTAGGTTTGGTGCCTTCTGCTGTCCTAGTGGTTGCAAAGAAGTAAAGGACGGCTAGTTATCCATGTTCTTCCACCAACAGGCCAAAATGGATTATTCACTGGACTGATTTAATTTTCTACACTATGTAATTTGAACCTGAAGTCATCAAACCATGATGAGTACCACTGAAATAAAACCATAACAACGGAAATGTTAACAAATTACATGAACCTTAAAGAGATCACAATGCAGCATACTgtagtttctttcttttttaatacatttggaaTAAACTTATTTCTTTGGTCAATGTCCATAAATAAAAAGCTCTAAATCATATTTGGTaaacaccaaataaacagtCATGTATAAACA
>XM_022684075.1
GTAAAAATGTGGCAATGAAAGAACCATGGCGGAGTTTACAACGTTAGAAAGCCTGCTGGAGATGGGCTTCGACAGAAACAGAGCGGAGAAGGCTGTAGCACATACTGGCAACCAGGGCATTGAGAGAGCTATGGACTGGCTAATGGAACACGAGAATGATCCAGACATAGACGAGCCCTACGTCCCACCAGCAGGGAATGTTCTAGGCTCACCAGAGCAAGAGAGCCCATCCCAGCCTGCAACAGAACCTATTATCTCTCCTGATGGGGAGATACTAGAGGGAGATTCTAAGCGACCAATGactgaggaggagaagaaggagcaGGTTAAGAGGCTTGAAGAGTTGATGAGGGTGAAAcaggaggagagaagagagagggagcgacaGGACGAGGTGGACAGGGAAAAGCAGAGAAGGAAGCAAGGCCAGGAGCTGCAGCAGGTCCGACAGAAGCTTCAGGAGGATGAAATGAAGAAGCTGGCTGATGATCggaggagagagaaaatggaGGACAAAATGGCTAAGCAGAGGGTCAAAGAGAAGATTGCACGTGACCGGGAAGAACGAGCACGAAAGTTTGGAGGGAGCTCTTCTAGTACATCACTGTCATctcccacttctgacaccacTCCCCAGTCTCCACCTGAGAGCCAGGGTCCTCCTCCAGCCAAGAAAGACTATGATGAATGTCGGATACAGGTGAGGCTCCTGGACGGTTCTGCACTGACGACAGTTTTTAAAGCCCAGGAGCCTCTGGCAGCAGTCAGGGTGTACGTGCAGATGAACAGCTCTGAGAGCCAAGACTTTACCCTACTCTCTCCTTACCCACGCCGCGTCTATACAGACCTCGACATGGAGAAACCTCTGAGTGAGCTAGGTTTGGTGCCTTCTGCTGTCCTAGTGGTTGCAAAGAAGTAAAGGACGGCTAGTTATCCATGTTCTTCCACCAACAGGCCAAAATGGATTATTCACTGGACTGATTTAATTTTCTACACTATGTAATTTGAACCTGAAGTCATCAAACCATGATGAGTACCACTGAAATAAAACCATAACAACGGAAATGTTAACAAATTACATGAACCTTAAAGAGATCACAATGCAGCATACTgtagtttctttcttttttaatacatttggaaTAAACTTATTTCTTTGGTCAATGTCCATAAATAAAAAGCTCTAAATCATATTTGGTaaacaccaaataaacagtCATGTATAAACA

Function

symbol description
ubxn1 Predicted to enable K6-linked polyubiquitin modification-dependent protein binding activity. Predicted to be involved in negative regulation of proteasomal ubiquitin-dependent protein catabolic process and negative regulation of protein ubiquitination. Predicted to be located in cytoplasm. Orthologous to human UBXN1 (UBX domain protein 1).

NR:

description
UBX domain-containing protein 1-like isoform X2

GO:

id name namespace
GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0031397 negative regulation of protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0071796 K6-linked polyubiquitin modification-dependent protein binding molecular_function

KEGG:

id description
K24348 UBXN1_4; UBX domain-containing protein 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246376.3 True 1284 mRNA 0.47 10 39509067 39512932
XM_022684075.1 False 1229 mRNA 0.47 10 39509067 39512298

Neighbor

gene id symbol gene type direction distance location
LOC103037815 LOC103037815,LOC107680588 coding downstream 29650 39475557 ~ 39479417 (-)
LOC103038656 NA coding downstream 62072 39436676 ~ 39446995 (-)
LOC103038965 rom1,rom1b,LOC108442594,LOC107601507,LOC107741443,LOC107680615,LOC107579621 coding downstream 73042 39429829 ~ 39436025 (-)
LOC103039284 LOC103039284,LOC108442595 coding downstream 80971 39402546 ~ 39428096 (-)
LOC103040115 flrt1,LOC103040115,LOC108269167,LOC107680662,LOC107601504,LOC107676529,LOC107741397,LOC107756485 coding downstream 193891 39278679 ~ 39315176 (-)
ttc9c ttc9c coding upstream 42939 39555871 ~ 39565187 (-)
LOC103033496 sfxn5b,LOC103033496,LOC108269334,LOC108418389,LOC107680572,LOC107730655,LOC107676508,LOC107756498,LOC105909219 coding upstream 59869 39572801 ~ 39593767 (-)
LOC103033813 LOC108418404 coding upstream 83505 39596437 ~ 39612646 (-)
slc30a9 slc30a9,LOC107756435,LOC107680574,LOC107550859 coding upstream 312381 39825313 ~ 39835771 (-)
LOC103030807 NA coding upstream 323365 39836297 ~ 39842575 (-)
G210772 LOC108418277,LOC108268893 non-coding downstream 4661 39503698 ~ 39504406 (-)
G210764 scyl1,ganab,LOC107741476,LOC107756491,LOC107601512 non-coding downstream 8134 39463107 ~ 39500933 (-)
G210752 scyl1 non-coding downstream 33713 39471582 ~ 39475354 (-)
G210749 NA non-coding downstream 40204 39381940 ~ 39468863 (-)
G210607 NA non-coding downstream 364636 39140107 ~ 39144431 (-)
G210799 grxcr1,si:dkey-109l4.6,LOC102787492 non-coding upstream 300407 39813339 ~ 39813564 (-)
G210800 NA non-coding upstream 303692 39816624 ~ 39819903 (-)
G210873 NA non-coding upstream 522631 40035563 ~ 40036100 (-)
G210868 NA non-coding upstream 541791 40054723 ~ 40055218 (-)
G210934 NA non-coding upstream 559453 40072385 ~ 40074768 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 2304682 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 2698571 36809307 ~ 36810496 (-)
G210059 NA other downstream 2798324 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 4749976 34709771 ~ 34759091 (-)
egf NA other downstream 4852583 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 14701 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 100783 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 130612 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 420184 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 848326 40361258 ~ 40363237 (-)

Expression


Co-expression Network