LOC103038965 (rom1,rom1b,LOC108442594,LOC107601507,LOC107741443,LOC107680615,LOC107579621)


Basic Information

Item Value
gene id LOC103038965
gene name rom1,rom1b,LOC108442594,LOC107601507,LOC107741443,LOC107680615,LOC107579621
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39429829 ~ 39436025 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246383.3
GCCCTATATTATATTTCTGAGCCCTCTCCAAAATGGCTGCGGAACTGTAGGAGGTGTACTGTAGGCTCTGGGTCCCAAACCAACGGAACTGAACAATTTTAAAGTATGACAGTCCTCAAGTTAAAGTTCTCCTTCCAGAGGAGAGTGCGTTTGGCCCAGGCCCTCTGGCTCCTGTCATGGGTGGCCATGTTCTCTGGAGTCATCACCTTTGCCACAGGGATCTTTCTTAAGACGGAACTGGTCCGCAGGGAAGAGGTGATGCACAATAATGACATCCACATTGTGCCCAATCTGTTGATTATGGTGGGTCTGGCATCTGTGGGCATCAACATCTGCGCTGGCAAAGTGTGTCAGGACTCGCTGGATGCCTCGCGATTTCCACGCTGGAAGAACATCCTCATTCCTTTCTTTTGCATTTCTTTCTTATTCACCTCCATGCTGCTGGTGGCCATGATCATGAGCTATGCCCTGCAGCCCAGCCTGGAGGAGTCTCTGAAGGTGGGCCTGAAGAACGGCATCCGCTTTTACAAGGATACGGACACACCAGGCCGATGCTTCCAGAAGGAGACCATTGACCGTCTCCAGATGGAGTTCCAGTGCTGTGGCAACACCAACTACAGGGACTGGTTTGAGGTGCAGTGGATCAACAACCGTTACCTGGACTTTACCTCCAAAGAAGTGAAAGATCGTGTGAGGAGTAACGTGGATGGTCGCTACCTGTTGGATGGAGTTCCGTTCAGTTGCTGTAATCCAGCCTCCCCGAGGCCCTGCATCCAGTACCAACTCCTGGATAACTCAGCCCATTTCAATTATGAGTACCAGTCTGAGGAGCTGAACCTGTACAACCGCGGCTGTCGTCAGGCTCTGGTCAGCTACTACATGAGCCTGATGAACACAATCGGGCCTGCAGTCATGTCTGTCTTCCTCATTCAGATGACTGTGCTGCTCAGCCTGCGCTTCCTTCAGACATCCATGGAGGCTGTAGAGGGCCAGGAGAACGTGGAGATCGAGACAGAGGGATACATTCTGGAAAAGGGAGTAAAGGAGACCATCATGGAGCTGAAAGAAAAGGTCAAGAACATCTTAAACCAAGTGAAGGTGGATGCTGCCCCATCCCAGGCTGAGCCAACAGAGGAAGAGGCAGGAGAGAAGGAGGCCACACCAGCCAGTTAAAGGCTAGAGACTGGTTGAccaaaaagtttaaaacagaGTATGATTCGGGACAAAATCATATGCACAActcttacttattttatattattattaaataccaGCTAATGTGTTATATAATTCTTAAATGCCACCTTTCTTGCCATTATTTGATGAAAAAGTAcctcttaaaatataaaaatcaataaGTCCTGATAATATACTCCTGCCCATCAAATGTTAACTTTTAAATCACAAACATCTGTGAAGATGTATTGATGAATGTAAAGTAAACCATAATGTTTTACATTGGTATTTTGAGAGTGTATATGAAACTGCATGCTGTTTGTAGTCCTTCCTTCTGCTTCATGCGTGGCTATAAAGATATCAGAATAGAGCAATTGCAAAAGAAGCGTGAGACAAATAAAGATTTGAGTTTGTATCTGC

Function

symbol description
rom1b Predicted to act upstream of or within visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in eye; retina; and retinal photoreceptor layer. Human ortholog(s) of this gene implicated in retinitis pigmentosa 7. Orthologous to human ROM1 (retinal outer segment membrane protein 1).
rom1 Predicted to enable protein homodimerization activity. Predicted to be involved in visual perception. Predicted to act upstream of or within several processes, including detection of light stimulus involved in visual perception; protein complex oligomerization; and retina development in camera-type eye. Predicted to be located in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Implicated in retinitis pigmentosa 7.

NR:

description
RDS/peripherin-like protein xRDS35

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246383.3 True 1596 mRNA 0.46 6 39429829 39436025

Neighbor

gene id symbol gene type direction distance location
LOC103039284 LOC103039284,LOC108442595 coding downstream 1733 39402546 ~ 39428096 (-)
LOC103040115 flrt1,LOC103040115,LOC108269167,LOC107680662,LOC107601504,LOC107676529,LOC107741397,LOC107756485 coding downstream 114653 39278679 ~ 39315176 (-)
LOC103041350 fermt3,fermt3b,LOC108442597,LOC107756484,LOC107741613,LOC107676531,LOC107550864 coding downstream 176601 39239951 ~ 39253228 (-)
LOC103042155 ctsf,LOC108442600,LOC107559296,LOC107587086,LOC107758541,LOC107680917 coding downstream 194081 39221149 ~ 39235748 (-)
eif1ad eif1ad coding downstream 211074 39215210 ~ 39218755 (-)
LOC103038656 NA coding upstream 651 39436676 ~ 39446995 (-)
LOC103037815 LOC103037815,LOC107680588 coding upstream 39532 39475557 ~ 39479417 (-)
ubxn1 ubxn1,LOC103356237 coding upstream 73042 39509067 ~ 39512932 (-)
ttc9c ttc9c coding upstream 119846 39555871 ~ 39565187 (-)
LOC103033496 sfxn5b,LOC103033496,LOC108269334,LOC108418389,LOC107680572,LOC107730655,LOC107676508,LOC107756498,LOC105909219 coding upstream 136776 39572801 ~ 39593767 (-)
G210607 NA non-coding downstream 285398 39140107 ~ 39144431 (-)
G210590 NA non-coding downstream 348232 39076137 ~ 39081597 (-)
G210580 NA non-coding downstream 406161 39022746 ~ 39023668 (-)
G210576 NA non-coding downstream 443414 38985708 ~ 38986415 (-)
G210573 NA non-coding downstream 447870 38981314 ~ 38981959 (-)
G210764 scyl1,ganab,LOC107741476,LOC107756491,LOC107601512 non-coding upstream 27082 39463107 ~ 39500933 (-)
G210752 scyl1 non-coding upstream 35557 39471582 ~ 39475354 (-)
G210772 LOC108418277,LOC108268893 non-coding upstream 67673 39503698 ~ 39504406 (-)
G210799 grxcr1,si:dkey-109l4.6,LOC102787492 non-coding upstream 377314 39813339 ~ 39813564 (-)
G210800 NA non-coding upstream 380599 39816624 ~ 39819903 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 2225444 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 2619333 36809307 ~ 36810496 (-)
G210059 NA other downstream 2719086 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 4670738 34709771 ~ 34759091 (-)
egf NA other downstream 4773345 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 91608 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 177690 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 207519 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 497091 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 925233 40361258 ~ 40363237 (-)

Expression


Co-expression Network