LOC103039284 (LOC103039284,LOC108442595)


Basic Information

Item Value
gene id LOC103039284
gene name LOC103039284,LOC108442595
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39402546 ~ 39428096 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246384.3
AGCTGTGAGGGGAACAGCGCTGGTGTAACCGCCGGGCTGATTCCGCGCTGCTGATTCCGGGGTGGTTACGCAGTGTCTGTGTTGCTAACGTGACAGAAAAGGAGAAGGGCAGTGGCAGCAGCCACAGTGCTAACTAACGGATATAACTTACCTTAGTAACCCAGCCCGAGAAAGTCTGAGAAAAGTTATTAGCTTTATAATACGAGCCATGAGCTGATACACTTCAGGCTTTAGTTAACTAACTTACACAAAGTTTTTATATATGAAATTAGTTTGGAAATTAAGATTTTAAGCGACTGCTGAGGCTCGGGTAAGATGGACGGTAACCTTACGGAAATGTTAGAAGAATTTATGGGAAGCGCACTTGTTACATGGGTGTATCTGTTTAAAGACATGGTGGATGATGAGGGAAACGGCCCCTTCTCCCAGGACTACATGGAAGTGAACTCCAACCCCCATAATGCAGTGCAGCAGTATCTGCGCCTCACCGACGGCATCTACCTCAATGAAGTCATGAGAATCATtgaccCAAATCCAAAAGTAGAGCAAATCTATCACAATGTGCATGATGATAAGATACTCCGAGTTCAGAATTTCTCCATCCTTAATCGGCACCTCAGGTCCTACTATCAGGAAAATCTTCAGCAACTTGTTTTGATGCCTCTTCCGAATGTGGCTGTTTTGGGACGAGACCCTCTTACAGAGGGTGCTGTGGAGGAACTAAGaaggctgctgctgctattACTGGGATGTGCTGTGCAGTGTGAGACGAAGGAAACCTTTATCCAGCAAATCCAGTCACTCAACATTGAAACCCAGGCAGCTCTTGCTCTCTGCATTCAGGAGGTGACTCAGGACCCCAGTGCTGTGCTGCCGCTGCAGTACGGGGATGTGTGTGGGCTGGAGGGAGTGGATATGCAGGTTCTGCTTGGTTCCCTGGCCCGACAGATTCAGACCCTACTGGCTCAGAGAGATGCACATCTTGAGAGGATTGTAGAACTGTGTGAGCATCGTGAATCTGGAAAATCCCCAACAGTGCCCCATTCGGGACTCTGGGACAACGCTCCTGAAGGACTGTCAATACAACTGGCAGACAGCAAAGCAAAATTACGTCGACTCAAACAGGAactGGAAGATAAAGAAGATCAAATTCTGGATTATAAGCAAGAAATGCAAACAATGGAAGAAGAACTAAAGAAACTAcagtgtgagaACCGGGCGTTGCAGGGCGAGGTTCGTGTTAGTCGAGGGCTACGTGATGAACTGGACTGTCTGCGTGAGCGAGCAGCTAGAGCAGAGCAGCTACAGACAGAGCTGAAAACCTGCACACATCGTCTGCGCAGCATGGAGCTCTACCGCACTCAACTGAAGgagcagcagcagtacTGTGCCTCTCTGCAGGAGAACAAGGCTCTCCTGGAGGAGCAGCTAGCTGATGCACGGGCACGGTGCTCTGCTCTACGGGAGCTGGAGAAGGACAATCTTCTACTACGACAGAAACTCATGGATATGGAGGGGGAGCGGGATGTGGAGAGACAGAGGGTAGATGAGTTGTTGGAGATGAACATGGGTCTGCAGGTGGAAATGAAGCGCCACTCTCACTCTGCTGATGTCATTCGGAGTATGACTCACTCTCGAGTCCTGCAGTCAGAGCTGGGGTCTGATGAAGAGCTTCAGGAGTTCAAGAGCCCTCCATCTCCTGAGGTGGACCTTAAGCCCCTGAGTGTCGAGGTGGATGAAGCATCCTCGCTGAGACTTCTGGGAGCTGAAAATGAAAACGCAGAGCTTAGAAGAAGACTGGAGCTTCTGCAGGCCGAGCAGGAGGCCAATTCCCCTGAGGTGAAAGAGGCTCTGCAGGGACTGACAGACAGACTCACACAACTGCAGGACGAGCACCAGAATACACTCAGAGAGTTTCAGAACATGAAGAATGAAAATACCACTCTGAAGACAAGCCTTGAAGAGCTGAAGAAAGTCCAGAGACTccaagagaaggagagagagaatgagaggtcAACCaaaaaagtggagagagtgattCTGAGAGGAGAGTGTGAAGGAAAAGACATGGCAAGGATAAAGGAGGCTGGCAGAgcagaggaaagaaaagaagacaTTAAGAGACCGCAGagagaagaaggagagggagaagAGGTACGActcagagaaagaaaagaggaggCTAAAGATGAAGcgggaaggaaagaaagaggagaagcagagggagagaaagaaattgagagacagaaagaaaaatcaGAAGACAGGTCAGCAAAGGATAAAAGCCAGACAGATATACAGCAGCCCACACAGACGGAAGATCAAAAAGAAGAGGTGAGAGAGCTAGATGAGAAGCTCAGACAGGAAACCTTGACTCTGTCTGCTCAGCTCCAGAAGGCCATGGAGGAGGCAGACCGGCAGGCAGCTCTGGTTCAGGAGCTGCACTCCAAACTTGGGGAGCAGATCAAGAAGACCCAGGAGGGAGAACAGAAACTGCTTCTTGTGGAGGCTGAGAGTcagagactgaggaaagcatcAGAGAACCTTACAGAAGCTAGAAAAAAGATAGAGAGTTTGCAGTGTGAATCTATGCACCAGGAGGAGGACCTGATGCGTCTCCGCAGTCAGGTAGAGCTGCAGAAGATGGAGGCTGCAGTAATTCCTCAGTTAGAGGGCGAGAGAGCTAaactagagagagaaagagagactctCAAGGCTACCATAGATTCTCTCAGGGCCACAGTGCGCAAGGGTGATCAGCTGGAGTTGACCAATCAGACTCTTAAATCTGAGCTTGAGCGTTTAGGGCGGAGCTTAGAATCTGCCCGCCGAAGAGAAGAGGAGTTAGAGGCTGAACTAAAGGAGTCTGGTCTTGAAGTAGAGTCTCTGAACAGAAGGCACGATCAGGCCATGCTGGAGGTCACAAGGTTGGAGCAAGAGAAGGAAGCGTGTCAGTCTGAACTGGACAGCCAGCGGCGTGAGCAGAGACAGAGGGAGCGAGAGATGGCCAGACTCAGACAGCAGCTGGAGAGCACTGCCTCAGCCCTGGAACATGGTAACCAGAGGGCCTGCAGCCTGGAGCTCCAGCACAGACGAGTGTGTCAGGAACTCAGCCAGCTTAAAGAGACCTGCTCTAAACTGGAGGAACTGCAAAAGGAGAACCAACAGCTAAATGCCCTAAATGCTGACAGGAACACACAAATCACCTCAATAACACAGGAGCTAGCCACTGAGAGAGTCCAGTCCCAGCAGTTGTCCAATCAGATTGCCAATCTGAATCAGTCTCTTAAAGAGATGGATGCCAAGCTTAAAGAGGCCACCTCACAACTTCAGCTGCAAACTAAGCTTTCCAGAGAAATGTCTGAGGCAACTTCCTCCACATCCAATGTAGCCACAGAGACGGTAGAAGAATCTAGACCAAACAGGCAGTCTCCAACtccaaagaaagaaagcaatGAGGAGGCGAATATCTGCTCTGTGAATCAGATCTCAGACAGACACAACTCTCTCTGTGCTTCAGAGGACTTAAAAACCTCTATGGAGAAACCTCAGAGTGCTGATACCAACAGAGAGGGACAGGAGCCTGTCAGTGAGAGACTGATAACCCTGGAGAAAGagAATGGGATGCTACTGCGAGAGCGGGACGTGTTGCTTTCACAGCTGGCCCAGTCTCAAACAGCCTGCTCTCAACTGCGAGAACAGCTGCACACAGTGCAGCGTCACTCCATCTGTCTGCAGGAGAACTGCACCAAACTACAGGACCTCAACACAAAACTGCAGGTAGAACAGGCTTCTCTAAGCTCCCAGCATGCCTCTGTGCTGGCACGGTGCAGAGAGAGTGAGGTGCGCTGTGCCACTCTGGAGGCGGAGTCTAAAGTTTGGCAGAAGGAGAGGGAAGAGTCATTTGTGCGGGTTGAGGCTTTAAGGCGGGACCATGAGAGATTGACAGCTTTGCAGCAGAGACAAGAGGCGGAGCTAGATGAACAACTGGACAAATACAGCAAGCTAAAGAGCAGCAGCCGGAGTATGGAGGCACAGTACAAGGACCTTGAGGCCAGGCATAAAGAGCTGATGGAGAGCAAAGCACAGCTGGAGGAGGCAGACAGAGCGATACaattggagagagagaggatggaaaGAGCAATGCAAGAGCGggcggagagagagaaagatctgGAGCGGCTGAAAATGGAGAACGACAGGTATGTGAACTTGCAGAAGGAGCAGGTGCAGTCAGAGTTATTGGCCCAGATATCAGTCCTGCGCAGTGACATGAGCTCAGTCCAGCTAGAGCGGACCAGATTGGAGGGTGAACTCAGCAAACTGAAAGAGCAGAACCAGCAGCTGGACCTTAACAACGTCCGCCTCAACAGCCAATACCAGctTCTTACTCAGTTAAAGGGGAATATGGAAGAGGAGAACAAACACCTGGTGGAGCAGAACCAGGCTCTGGCTAAAGAGAACAGGGCCTTAATGGAGCGCAGCCTGGAGAGCAGAGATCAACACCACAACCAACAGAGAGAGTATCTTGATAAATTGAATGAGCTCCGCCGGGAGAAGCAGAAGTTAGTAGAAAAGATAATGGATCAGTATCGGGTTCTGGAGCCTGGCGTGCCTGCACCCAAACAAGTCAAAAAATCAAACTGGATTGCGGATCGTATGAAGAAGCTAATAAAGCCTAAAGGAATCAGAGAAGGTCAGGCCAAATTCATCGCTGCCGGCAGCATAGAGAACCTGGCAGACATCGGAGATGCACCACCCTCCTCTCCAGCGCACATTCATGAGGTAGACCCCCGCAGTGCACCAGTTTCCCCCACACCCCTGCGGAGGGTGTCCTCTCAGGGAGATACAGAAGAACAGCCCAAAGTGGTGGTTCGGTCAGCGCGTCGTAAGCTGGGCTCCAGACACGGTTGGGGGATGAGCCGGGGCAGAGAGGGGGCCGTGTCCCAGTCCTTCAGTCCAGGAGACCAGCGTCCCCTGCCCCGCGGCCGCTTCCGCACACCGTCCTCCGCACTGTGGGAGAAGGAGAAGGACAGCAGCCCTTCACCCAGTGAGGAGGGTAGAGGTGTTTCAGGTGAGAGTGAAGAGAATCTTACGCTTGAGCACTCAGACGTTAGCCGTGTCTCCTCTGGAGCTGAAGATTTCCATTCCAGCTTTGACAAACCCATGGATTAGGAACAAGAAGAAGATACGTACGACTGtagtaataattattttttatttacttttttttgactgtttttattCAGCATTTATATGATGTACATTGGCTATTTTATGGGCGTATATGAGCACTGTCCAGTGCATTGCTGGGTTTTGCCACAGTCTTGTTTGCACtataaattaaaacagatgtattttaagtaaagcttgaataaatatttttttgtacattt

Function

NR:

description
girdin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246384.3 True 5396 mRNA 0.50 29 39402546 39428096

Neighbor

gene id symbol gene type direction distance location
LOC103040115 flrt1,LOC103040115,LOC108269167,LOC107680662,LOC107601504,LOC107676529,LOC107741397,LOC107756485 coding downstream 87370 39278679 ~ 39315176 (-)
LOC103041350 fermt3,fermt3b,LOC108442597,LOC107756484,LOC107741613,LOC107676531,LOC107550864 coding downstream 149318 39239951 ~ 39253228 (-)
LOC103042155 ctsf,LOC108442600,LOC107559296,LOC107587086,LOC107758541,LOC107680917 coding downstream 166798 39221149 ~ 39235748 (-)
eif1ad eif1ad coding downstream 183791 39215210 ~ 39218755 (-)
LOC103043921 purab,LOC103043921,LOC108442604,LOC108268831,LOC105897443,LOC107559286,LOC107660791,LOC107660159,LOC107758524 coding downstream 255414 39144836 ~ 39147132 (-)
LOC103038965 rom1,rom1b,LOC108442594,LOC107601507,LOC107741443,LOC107680615,LOC107579621 coding upstream 1733 39429829 ~ 39436025 (-)
LOC103038656 NA coding upstream 8580 39436676 ~ 39446995 (-)
LOC103037815 LOC103037815,LOC107680588 coding upstream 47461 39475557 ~ 39479417 (-)
ubxn1 ubxn1,LOC103356237 coding upstream 80971 39509067 ~ 39512932 (-)
ttc9c ttc9c coding upstream 127775 39555871 ~ 39565187 (-)
G210607 NA non-coding downstream 258115 39140107 ~ 39144431 (-)
G210590 NA non-coding downstream 320949 39076137 ~ 39081597 (-)
G210580 NA non-coding downstream 378878 39022746 ~ 39023668 (-)
G210576 NA non-coding downstream 416131 38985708 ~ 38986415 (-)
G210573 NA non-coding downstream 420587 38981314 ~ 38981959 (-)
G210764 scyl1,ganab,LOC107741476,LOC107756491,LOC107601512 non-coding upstream 35011 39463107 ~ 39500933 (-)
G210752 scyl1 non-coding upstream 43486 39471582 ~ 39475354 (-)
G210772 LOC108418277,LOC108268893 non-coding upstream 75602 39503698 ~ 39504406 (-)
G210799 grxcr1,si:dkey-109l4.6,LOC102787492 non-coding upstream 385243 39813339 ~ 39813564 (-)
G210800 NA non-coding upstream 388528 39816624 ~ 39819903 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 2198161 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 2592050 36809307 ~ 36810496 (-)
G210059 NA other downstream 2691803 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 4643455 34709771 ~ 34759091 (-)
egf NA other downstream 4746062 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 99537 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 185619 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 215448 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 505020 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 933162 40361258 ~ 40363237 (-)

Expression


Co-expression Network