LOC103040115 (flrt1,LOC103040115,LOC108269167,LOC107680662,LOC107601504,LOC107676529,LOC107741397,LOC107756485)


Basic Information

Item Value
gene id LOC103040115
gene name flrt1,LOC103040115,LOC108269167,LOC107680662,LOC107601504,LOC107676529,LOC107741397,LOC107756485
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 39278679 ~ 39315176 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246388.3
GGAGCCGCGCGCGCGCCACGAGCGCTCAAACGCccgagcagcagcagcctcaACGACAGCGCGAGGAGCGCGTGCAGCACTCAGGTGAAGAAACTCTCAAAAGTGGGGGAAAACGCAGCAGAACCGTCGCAGATGTGAGAACACCCAGTCAAAATGATGAGGGCACCCCTGGATGTACAAAGACTCCCCCCCAAAACACTGGTTACGAGATGTTCTGGCTGTAGGAGTTGGGACAAACAGTGAATGCTTTGACTGAACTGCTCTGAAGACTGGAAACTTTCTCTGGATGGAGATATATGCTGGTGTCAGTGCCTACAATTCTTGTAATTCCCATAATTCCCACGAATGCCACCAGTAATGGATGCCATGGCTACCACTCACTGAAGTGAAAGGACATGCAAGGACACTGaagcagtgtaaaaaaaaatttaagccaATCCTGGTAGTTCTCACCATCTCAAGACAAGTTCCACAAAGGCAAAGGACAACCCAAACCATCCTCACAAACTAGTTTTGGCAGGAAAAGAGGATCCGTGTCACAAAGTGCTATCCCAACCACCCCCAACAACACTCCAAAGTTCCAAAAGGAGTTGAGAAGCTGTGAGGGAACTAAGGCACAATATGGCAGCTGAAAGCCTAATCGAGCTCAGGGACTGGCTGTTCCTGCTACTCCTGTGCCTGACGCTACTGGTGGAAGTGCTGGAGTTTGCAGCAGCAACAGCTGCCATCACTGAGGCGGCACTCGGGGAAGCAGAGCTTCAAGGAGATGTACCGTGTCCGTCAGCATGTAGGTGTGATGACGGCTTCATTTACTGCAACGACCGTGGACTGAGCATCATACCTGCTTTGCCGTTAACAGCAGCCGTTCTCTATTTGCAAAATAATCGCATTGATAACGCTGGCCTACCTGTTTCTTTAGAGCAGCGAATGACTGTTCAAGTGGTTTATCTTTATGACAATGAACTCGATGATTTTCCAACGCACTTGCCTCCCTCGTTACGAGAACTTCATCTACAGGACAACAATATACGAACTTTACCCCGAGCTGCTCTAGCACGTTTACCCTTGCTAGAGAAACTCCATATGGATGATAACTCAATTTCAACCGTAAGCATCGAAGACAAGGCATTTGCAAATAATCCACGGCTACGGCTGCTCTTCTTGTCACGCAACCACCTGTCAAGTATACCATCAGGGTTGCCATCATCGCTTGAGGAGCTTCGGCTGGATGACAATCGAATTTCCACGATTCCGACTCATGCGTTCAGGGGGCTCACTTCGCTTAGACGTCTTTTCCTCGATGGGAACCTGTTAGCAAATCAACGCATTGCTGATGACACATTTTCACGCCTGTCTAATTTAACAGAGCTCTCTTTGGTGCGCAATTCTCTTCAGTCTCCACCTTTAAACCTTCCCAGCTCACATCTTCTTCGATTATATCTGCAGGATAATGCAATGGCTCACATGCCACGAGGTTCCTTGGATGGTATGCGTAGATTACAGAAGCTGGACCTGTCAGGCAACAACCTTACCACCCTCCCCAGGGGCCTGTTCAGGGACTTGGACAGCATTTCACAGCTGCTTCTACGTGGAAATCCCTGGCATTGTGGCTGTAACCTCCGTTGGCTCCATGACTGGTTGCACGTCCGAGGATCATCTGTAACCGTGAGGGGGCTAACATGTCACGGACCAGAAAAGGTCAGGGGAAAATCACTGAGGGACCTCACAAGTCAAATGGAGCAATGTGAGGTAGCTGTGGATGGACTAGGTGCTGTTGGAGGGCTTGGGGGAGGCAATGGCGCCAAGGGGGCAAAAGATAAGGGGGATTTTCCAACCGAAATCCCAATTACAACAACCGTCCCACTTCCCCAAGGTTCCCTCTTCACACTCAGGTCGAGGCGACCTGTACACAGGTACCCTGATTTGGGACAGGACAGTTCTTTAGGGGGTGAAAGTGGGGTTGCTGGCAAAACATTGATCATCAGCGTAAAGCCTTTAACTCCAGAGACAGTCCATATTACATGGCAAGCTGCTCAGCCAGCATCAGCTTTCAGGCTCTCCTGGTTAAGACTAGGCAACAACCCGGCCATGGGTTCCATCACAGAGACACTAGTCCCAGGTGACCGCAGGGAGTATTTACTCACTCAACTACAACCGCAGTCAAGCTACATTATCTGCTTGGTGCCTCTTGTTGTCAACAAGGGAAGATGGACATCAATTACAGCAACAGGGGGGTTTAATATGAACACTGACTCAGAGCATGAGCATCCTGCTTGTGCCCGAACAGAGACAGGAGATCCCCAGATTCAGCCTGGTGCTGATCGGGGCCAGGACGTACAGGGTATGGACGAACTAGCGGCCTTACCTCTTGCAGGGATTATTGGAGGAGTGACTGCATGTGTATCTCTGTTCTTAATTTTTGGGATCTTCTGCTGGTATGGACATCGTGCAGGATACCTTGCAGCTGATGATCATACCGTATATGGACGAGATGCTGTTGTGTCCCGTAGTGGCACAAAGCATTATGATGACTATGTAGAATCTGGTACCATTAAAGACACCTCAATCTTAGAGATTGGAACTCCTGGTTTCCAGATGACGCCACTGGCTGCGCATCAACCTTTGCAGCCAAAAGCTAAAGTTGAGGACATGACATACATTCATACAATTTTTCCCTCAAATAATACAACCCTTTATAGGAGCACCCTTAACCACACAGTGAATCCAGGCTATGGAACCAACCGAGGATACAGAGAAGGAGGAATTCCAGATATAGATTATGCCTACACGTGATGGCATCTATACTATAccatgtctttttttcttttcactatGTTTAATACTGAGTAGCTGAGTAGGGGTTTGTTCATTGCCCTAGGTTCCAAAGTAGGGGTGTGCCGATTTTGAAGTAGCCTATACATCATTCATATACATTATTCATACTGactgaaaaatatattaagagAGATTGTCCAttgaacaaattaattaaatcaagAATTTGCAGAGAAGAAAAAGTGTCATCATTGACATTTTTAATTCCTTTTTGAAAACTGGAAGAAACATCCCATTTCACAAAAAGAACTAATTTCATTACTGACCACTCAAAGCTGGGTGTAAAACCAATGCACCCCGTAAAGGGCTTTTATTATCGTTATTGATTTATTCAGGTCATGCCTTGTGTGTCTTTGGCACCACATAATTTCTGACAAGTCTGCGACATGACCTCATTTTCATACGCCAAGTCATGAAGCAAAATTTCAATTGGCACGCCCCTAATCCAAATGTACCCTTTGTGCCTCCTTCAGTCTATTTCCAGTCTATCTGTTTCTCAATACAATTTAGGGCAAAGATCCTCTGGAACAAGCTTGTAACACTTAACATATAAGTGCCAGAGATACCATTCTTGGTATTGACTTGACATAATCcaacattttaaaagtgaaCTGATTaacctttctttccttttagtACCAATGATTacctgtttatttcctttaactAGGTCATGTTAAGGGGACATATAGGAGGGTTAGCATGAGGATAAGGTGTATGCTGAGGGACCAGGTGTGTATAGTAGCTTTActacctgtactgtatatacgtatatgtgctggggagaaaatggatgCCTTTCAAGTCTTACAGGACACCTACTCagtcaacaacaacaaaagcaagaaaaaagggATTGGGGCgatgaaaaaaacaagactaaaaAAGAAGTCAGCCTTTCTGTTTGTCATTCTGATTCTAGGTTCTTATTTTCCCtattccctctgtctctctttggttttcttttattatttcctgggttttttctttcttcttttgcaCACTGTGCAACTACTTTGTTCCAAGCCCAGAGAGCAGACAGGGGTGATAACGGTTTTGACAACGAAGGAACTCAAATTGCTCCTGGGTGTCTTTTCTTTtaacaagagagaaaaacaagggAAAGAAGGCTTTGGAAAACAAGGGCAAGTGAGGAAAGGTTTCAtgcaaacaacaacaaaaaaatctctcattaaaaaaaacaggtatttGGTGAATGGATGTCTTGTGTTTCAAAAAACATTGGATTTATCACTTGACACATAAAAGGGTTTCCAGTATAGCTACAAATTCTTGATTCATTTCACTCCTTCtacaaaaactgtaaaaaaaaaaaaaaaaaaaaaaaaaatctaagctaGGCTCCTTTCACAAGAGCTTAAAAACACCCACTCTTCTAAAGACAATCATGTAAGGGAGACATCTCCTAATTGATGATTCTACCCAAACTGACAGGCTGACACAGATAAAGTGGTCAATTTGGTACTAACCTAATGCAAGTTAATGGGAAGGGGCTGTCAATAAAGAGCCCGTCTCTGGAGAATAACATGGGCACTGAATCTAATAAAGGGCATGAAAATTGGTCTGTGGACATTTCCATGAGTCTAACTCTGTCACTATCAtctttgtaaaacaaaaatggcAGTATATTAGCCTATGCCCTTAAGatataacacacacagaaatcagggaaacatacacatacatacatacacacacacacacacacacacacacatttacacatcacTGTGGACCTCTGTATCTCGGGCAAAGAGGAAGGTTTGACCAGAAGTCAGTCTATTTCATGGTTGTGGACAATCTTTTTCCCAACATACTGCACAGAAATGGGGAGCATATCTTGTGAGGCTAGTGTGTTAGGAATGTCAGAAGATGGCAGATAGTGCTTAGTCCCTTTAATTTTCTTGCCTTTTCTGATGCATTTTGAACGTGAGAAATTTGAACTAATAGTAAAtctgtcactctttctcttAATGGAAAATTCTCTGCAATGGATAATAACTacagcttgtttttttccaccagtatatacatctatatataatattaaaaaggaGTTGTGATGAACAGCT

Function

symbol description
flrt1 Predicted to enable fibroblast growth factor receptor binding activity. Predicted to be involved in dendrite development; fibroblast growth factor receptor signaling pathway; and neuron projection extension. Predicted to act upstream of or within positive regulation of synapse assembly. Predicted to be located in several cellular components, including neuron projection terminus; neuronal cell body membrane; and perinuclear region of cytoplasm. Predicted to be integral component of plasma membrane. Predicted to be active in extracellular space. Predicted to colocalize with focal adhesion.

NR:

description
leucine-rich repeat transmembrane protein FLRT1-like

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246388.3 True 4928 mRNA 0.44 3 39278679 39315176

Neighbor

gene id symbol gene type direction distance location
LOC103041350 fermt3,fermt3b,LOC108442597,LOC107756484,LOC107741613,LOC107676531,LOC107550864 coding downstream 25451 39239951 ~ 39253228 (-)
LOC103042155 ctsf,LOC108442600,LOC107559296,LOC107587086,LOC107758541,LOC107680917 coding downstream 42931 39221149 ~ 39235748 (-)
eif1ad eif1ad coding downstream 59924 39215210 ~ 39218755 (-)
LOC103043921 purab,LOC103043921,LOC108442604,LOC108268831,LOC105897443,LOC107559286,LOC107660791,LOC107660159,LOC107758524 coding downstream 131547 39144836 ~ 39147132 (-)
LOC103037382 LOC108418154 coding downstream 244642 39026145 ~ 39034037 (-)
LOC103039284 LOC103039284,LOC108442595 coding upstream 87370 39402546 ~ 39428096 (-)
LOC103038965 rom1,rom1b,LOC108442594,LOC107601507,LOC107741443,LOC107680615,LOC107579621 coding upstream 114653 39429829 ~ 39436025 (-)
LOC103038656 NA coding upstream 121500 39436676 ~ 39446995 (-)
LOC103037815 LOC103037815,LOC107680588 coding upstream 160381 39475557 ~ 39479417 (-)
ubxn1 ubxn1,LOC103356237 coding upstream 193891 39509067 ~ 39512932 (-)
G210607 NA non-coding downstream 134248 39140107 ~ 39144431 (-)
G210590 NA non-coding downstream 197082 39076137 ~ 39081597 (-)
G210580 NA non-coding downstream 255011 39022746 ~ 39023668 (-)
G210576 NA non-coding downstream 292264 38985708 ~ 38986415 (-)
G210573 NA non-coding downstream 296720 38981314 ~ 38981959 (-)
G210749 NA non-coding upstream 66764 39381940 ~ 39468863 (-)
G210764 scyl1,ganab,LOC107741476,LOC107756491,LOC107601512 non-coding upstream 147931 39463107 ~ 39500933 (-)
G210752 scyl1 non-coding upstream 156406 39471582 ~ 39475354 (-)
G210772 LOC108418277,LOC108268893 non-coding upstream 188522 39503698 ~ 39504406 (-)
G210799 grxcr1,si:dkey-109l4.6,LOC102787492 non-coding upstream 498163 39813339 ~ 39813564 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 2074294 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 2468183 36809307 ~ 36810496 (-)
G210059 NA other downstream 2567936 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 4519588 34709771 ~ 34759091 (-)
egf NA other downstream 4622195 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 212457 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 298539 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 328368 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 617940 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 1046082 40361258 ~ 40363237 (-)

Expression


Co-expression Network