G50662


Basic Information

Item Value
gene id G50662
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 335039 ~ 335961 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU57656
GATCTTTTTAAATATATATATACAGGTGCTGGTCATATAATTAGAATATCGTGAAAAAGTTCATTTTTTTATTGTAAATTATTTTAAAAAATGAAACTTTCATATATTCTAGATTCCCTACATGTAAAGTAAAACATTTCAAAAGTTTTTTTTTTTTTTAATTTGTTGATTAGCGCGTACAGCTCATGAAAGTCCAAAATCCAGTATCTCAAAATATTAGAATATTTACATTTGAGTTTCATTAAATGACCATCCCTACAGTATAAATTCCGGGTATCTTTTGTTCTTTGAAACCACACTAATGGGGAAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGAGTGATGTATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCAATTCAAACACTTAAGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCGGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGTCGAAAGTCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCATGTTGAAATCATGGTCCCAGAGTCTGAAGGAAGACTGGAGAGGCACAGAATCCAAGCTGCTTGAAGTCTAGTGTGAAGTTTCTGAAGTCAATAATGATTTGGGGGGGCCGTGACGTCTGCTGGTGTTGGTCCATTGTGTTTTATCAAGTGCAGAGTCAATGCAGCCATCTTCCAGGA
>TU57650
CAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCAATTCAAACACTTAAGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCGGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAAC
>TU57652
CAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCAATTCAAACACTTAAGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCGGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGTCGAAAGTCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCATGTTGAAATCATGGTCCCAGAGTCTGAAGGAAGACTGGAGAGGCACAGAATCCAAGCTGCTTGAAGTCTAGTGTGAAGTTTCTGAAGTCAATAATGATTTGGGGGGGCCGTGACGTCTGCTGGTGTTGGTCCATTGTGTTTTATCAAGTGCAGAGTCAATGCAGCCATCTTCCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57656 False 923 lncRNA 0.33 1 335039 335961
TU57650 False 280 lncRNA 0.45 1 335458 335737
TU57652 True 504 lncRNA 0.36 1 335458 335961

Neighbor

gene id symbol gene type direction distance location
CI01000009_00326208_00333904 NA coding upstream 738 326208 ~ 334301 (+)
CI01000009_00318494_00322434 NA coding upstream 11984 318256 ~ 323055 (+)
CI01000009_00300778_00315275 NA coding upstream 19634 300778 ~ 315405 (+)
CI01000009_00260081_00285692 RNF17 coding upstream 49328 259906 ~ 285711 (+)
CI01000009_00242093_00247335 FDX1 coding upstream 87696 241961 ~ 247343 (+)
CI01000009_00343750_00344964 TRIM13 coding downstream 7789 343750 ~ 345290 (+)
CI01000009_00363403_00368182 RNASEH2B coding downstream 27442 363403 ~ 368216 (+)
CI01000009_00378726_00379550 NA coding downstream 42765 378726 ~ 379804 (+)
CI01000009_00541592_00545933 CMSS1 coding downstream 204808 540769 ~ 545997 (+)
CI01000009_00547369_00551459 NA coding downstream 211408 547369 ~ 552216 (+)
G50508 NA non-coding upstream 112191 176066 ~ 222848 (+)
G50480 NA non-coding upstream 217039 117563 ~ 118000 (+)
G50473 NA non-coding upstream 235983 97886 ~ 99056 (+)
CI01000009_00094836_00095813 NA non-coding upstream 237809 94371 ~ 97230 (+)
G50469 NA non-coding upstream 255523 79280 ~ 79516 (+)
G50664 NA non-coding downstream 22517 358478 ~ 358706 (+)
G50666 NA non-coding downstream 44587 380548 ~ 380857 (+)
G50627 NA non-coding downstream 45253 381214 ~ 385408 (+)
G50639 NA non-coding downstream 52237 388198 ~ 388652 (+)
G50633 NA non-coding downstream 52789 388750 ~ 389122 (+)
G50920 NA other downstream 433880 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 1086886 1429873 ~ 1435328 (+)
G51122 NA other downstream 1344185 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1558274 1897343 ~ 1919516 (+)
G51274 NA other downstream 1919138 2255099 ~ 2350486 (+)

Expression


Co-expression Network