thoc3 (thoc3,LOC107664783,LOC107662035,LOC107598370)


Basic Information

Item Value
gene id thoc3
gene name thoc3,LOC107664783,LOC107662035,LOC107598370
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 38044021 ~ 38048482 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246428.3
GCGGCGCTGGTCTTCAGTTCCGGGTAAAAAAACACCGGGCCAGTTTAAAGGAAGCAGCGGTGAAAATGGCGTCCTCCTACTTTCATGAGATGCAGGAGAATTTCAGGAATAACAACAAGAGCCGCGAGTTTCCCGCTCACAGCGCTAAAGTCCACTCCGTCGCCTGGAGCTGCGACGGGAGGCGGCTGGCCTCGGGCTCGTTTGATAAAACAGcgagtgtgtttgtgctggagAAAGACCGGCTGGTGAAGGAGAATAACTACAGAGGTCATGGAGACAGTGTTGACCAGCTGTGTTGGCACCCAACCAACCCGGATCTGTTTGTCACTGCTTCTGGGGACAAGACCATTCGGATCTGGGATGTCCGCACTACTAAATGCATGGCCACGGTCAGCACCAAAGGAGAGAACATTAACATATGTTGGAGTCCTGATGGTCAGACCATAGCTGTGGGGAATAAGGATGATGTGGTTACTTTTATTGATGCTAAAACTCACCGCCCACGTGCTGAAGAACAGTTCAAGTTTGAGGTCAACGAAATTTCCTGGAACAACGATAATGATATGTTCTTTTTGACTAATGGTAATGGCTGCATCAACATTTTGAGttacCCTGAACTAAAGCTCATTCAGTCAATAAATGCTCATCCGTCCAACTGCATCTGCATCAAATTTGATCCCACTGGCAAGTATTTTGCTACTGGAAGTGCAGATGCTCTGGTCAGTCTGTGGGATGTTGACGAGTTGGTGTGTGTTCGCTGTTTCTCAAGGTTAGACTGGCCAGTTCGAACCCTGAGCTTTAGTCATGATGGAAAAATGTTGGCATCAGCCTCTGAAGATCACTTCATTGATATTGCTGAGGTGGAGACAGGAGAGAAGCTTTGGGAGGTCCAGTGTGAGTCTCCAACCTTCACTGTAGCCTGGCATCCGAAGAGGCCGCTGTTGGCTTATGCCTGTGATGACAAGGAAGGAAAGTATGACAGTAACCGTGAGGCAGGGACTGTCAAGCTTTTTGGCCTTCCTAATGACTCTTGAGGAATgatgtcacacacacagacctggCCAGTACCACCTGCACCAGCGGTAGTTGTCTCTACACTGGCTTTGTTCTTTTGCTGGAACAGATCAGCCCCTCAAATTCAGCTGTATGCTAGAAGTGTtcactatatgtatatatatttttagttccTGGGTAATTCCATTATCATTTTTACATGCAGAAACAAACCGTTGGAACATTTTAGTATCACAGCTTCGTGACGCCTCATTTTTATGTTCCTGCAAAAGCTGTAAACATGAGTTCAACTGAGTTCAAAAGAGAAGCATTGTTGTATTTATACAAAGCTTATTTCCAACTATGAAAGCCGATAcagttagtgtttgtagatgttCTTTAAAAGTTTCTTCAGTCTTGCGATCACAGACTTAAGTATGGATATCACATTACAGGTTATATGATTTGGAGTCTATGAGTTTGACCACCAGATGACGCCAGTGGACAATTTTACACTTCAGCACTGTTTGCTGGTATTCTGTAATGCAGACAttcccatatttttttccattgaaCCCATTTTTTGTATGgcgttttattatattaaataaacaatgttttgtaAGA

Function

symbol description
thoc3 Predicted to be involved in mRNA export from nucleus. Predicted to be part of THO complex part of transcription export complex. Orthologous to human THOC3 (THO complex 3).

NR:

description
THO complex subunit 3

GO: NA

KEGG:

id description
K12880 THOC3; THO complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246428.3 True 1620 mRNA 0.44 6 38044021 38048482

Neighbor

gene id symbol gene type direction distance location
glra1 glra1,LOC107717398,LOC107662012 coding downstream 267305 37694053 ~ 37776716 (-)
LOC103027906 LOC108416579,LOC108269025,LOC107662007,LOC107741056,LOC107664772,LOC107717388,LOC102314633 coding downstream 418082 37558694 ~ 37625939 (-)
gm2a gm2a coding downstream 622871 37414592 ~ 37421150 (-)
ccdc69 ccdc69 coding downstream 636592 37392070 ~ 37407429 (-)
LOC103038966 LOC108417621,LOC108268934,LOC107741049,LOC107662002,LOC107563594 coding downstream 758291 37280841 ~ 37285730 (-)
LOC103024433 si:dkey-280e21.3,LOC108417838,LOC108268502,LOC105913081,LOC107664720,LOC107741091 coding upstream 1756 38050238 ~ 38075468 (-)
LOC103022549 tmem216,LOC108416639,LOC108268819 coding upstream 27647 38076129 ~ 38079211 (-)
LOC103023908 NA coding upstream 30905 38079387 ~ 38109064 (-)
LOC103036455 NA coding upstream 63563 38112045 ~ 38128787 (-)
LOC103038351 NA coding upstream 84410 38132892 ~ 38134329 (-)
G210445 NA non-coding downstream 9552 38025424 ~ 38034469 (-)
G210372 NA non-coding downstream 186648 37857038 ~ 37857373 (-)
G210365 NA non-coding downstream 218201 37825219 ~ 37825820 (-)
G210347 g3bp1,LOC107683011 non-coding downstream 360519 37677456 ~ 37683502 (-)
G210339 NA non-coding downstream 397152 37646192 ~ 37646869 (-)
G210448 NA non-coding upstream 74013 38122495 ~ 38124887 (-)
G210453 NA non-coding upstream 169793 38218275 ~ 38218728 (-)
G210457 NA non-coding upstream 223143 38271625 ~ 38271862 (-)
G210477 NA non-coding upstream 301477 38349959 ~ 38372198 (-)
G210506 NA non-coding upstream 471681 38520163 ~ 38520494 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 839636 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 1233525 36809307 ~ 36810496 (-)
G210059 NA other downstream 1333278 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 3284930 34709771 ~ 34759091 (-)
egf NA other downstream 3387537 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 1479151 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 1565233 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 1595062 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 1884634 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 2312776 40361258 ~ 40363237 (-)

Expression


Co-expression Network