glra1 (glra1,LOC107717398,LOC107662012)


Basic Information

Item Value
gene id glra1
gene name glra1,LOC107717398,LOC107662012
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37694053 ~ 37776716 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246433.3
CGGTCCGGTGCTGTTTGCTGGGGTGAAGGGAGAAGAAATTGAAGCGCCGGTCACGCAGAGAGAGGCACGTTCAGGCTCTCCGTATCCGTTTCACACAACTTCTGGGGGATTGCGCTGCTCTGAGGTGGAGGTCGGGAGTTTGGTTTCTGTGCCAAGCGGACACTGAGAGCGAGGactgagggaaagagagagcgtcCTGTGtagctactattactactactactactactattattactactactactagtggcACTGCTAGCTAGTTGTTGAGCTAAACCTCTATGcaagaattattattaatattactattattattattattattattattattataggctCTCCTGAAGGTCTCACCGCGCTGGCTATGGATTGTCCAGAGTGAACAGCTTCTCAATTTGTTTCATCctgttagttaattagttaactagctagctgtaCCACACAAGCTGCTcttccctcttttttctctctctctatatctttctCTTTAGCTATTACTTTCTCCCTatatctctatttctttctgtctgtctctctgtctatttttctatctctctctatttctccgcGGTCATACAACGTGAACTCGAACCTCACGGTGTGCTAATCAATCGATAGCCACTGTCTGGAAGGAAAATGGTCGCCTCGCCTCTTCCTCTGTGGTCTTAAACACACATGCTTGTTTTTGGCTCTTACCTTTTTCCTAaaacaagcagcagcagcaacaagaagaagaagaacaaggaggagaagaagagtcAGTCCTTCCCCGCCTCGGAAGTCTGAAATCACGCCAGGGATTGTATTGTGCAAGCTAACGGTGGCCCAAAGCTCCTGAGTCTGGCAAAATGTGCAAATTGAACGCACTCGGGATTTATTTGTGGGAAACTATACTGTTTTTCAgCTTGGCAGCATCCCAGCAAGCTGCAGCGCGGAAAGCTGCCTCCCCCATGCCCCCTTCAGAGTTCTTGGACAAACTCATGGGAAAAGTGTCTGGTTACGATGCAAGAATCAGACCTAATTTTAAAGacccACAAGGCTCCAAATCGGATGGTACTCACAAGAAAGGTCCCCCTGTGAACGTAACatgcaacatttttattaacagTTTTGGGTCCATTGCTGAAACAACAATGGATTACAGAGTGAACATTTTCCTGAGACAGCAGTGGAATGACCCGCGACTGGCCTACAGCGAATACCCCGACGACTCCCTCGACCTGGACCCCTCCATGTTGGACTCCATTTGGAAGCCTGATCTTTTCTTTGCCAACGAAAAAGGAGCCAATTTCCACGAGGTTACCACCGACAACAAGCTCCTGCGCATCTCCAAAAACGGGAACGTGTTATACAGCATAAGGATAACACTGGTTCTGGCCTGCCCTATGGACCTGAAGAACTTCCCTATGGATGTGCAGACCTGTATAATGCAGCTGGAGAGCTTCGGCTACACGATGAATGATCTGATATTCGAGTGGGATGAGAAGGGGGCGGTGCAGGTAGCTGACGGGCTGACGTTACCCCAGTTTATTCTGAAGGAGGAGAAGGACTTGCGCTACTGCACCAAGCACTACAACACAGGCAAGTTCACGTGCATTGAGGCTCGCTTCCATCTGGAGAGACAGATGGGTTATTACTTGATTCAGATGTACATCCCCAGCCTGCTGATTGTTATCTTGTCATGGGTGTCCTTCTGGATCAACATGGACGCCGCCCCTGCTCGAGTTGGCCTGGGCATCACCACTGTGCTGACCATGACCACCCAGAGCTCAGGGTCCAGAGCATCTCTGCCTAAGGTTTCCTACGTGAAAGCCATCGACATCTGGATGGCCGTGTGCCTCCTGTTCGTCTTCTCTGCTCTGCTGGAATACGCCGCTGTCAACTTCATCGCCCGCCAGCACAAGGAGCTGTTGCGCTTCCAGAGAAGGAGACGGCACCTTAAGGAGGATGAAGCAGGAGAAGGCCGTTTCAGCTTCGCTGCGTACGGCATGGGCCCAGCGTGTCTGCAGGCCAAGGACGGTATGGCCATCAAGGGCAACAACAACAACGCCCCCACCTCCAGCATCCCACCCGAGAAGACCGTGGAGGAGATGCGCAAGCTGTTCATCAGCCGCGCCAAGCGCATCGACACCGTGTCCCGTGTGGCCTTCCCCCTCGTCTTcctcatttttaacattttctactGGATCATTTACAAGATCATTCGCAGCGAGGATGTTCACAAGCAGTAAAAAACATCTTGCTAAAAGGGCGAGCCCTGACCGAAAAAGCCGCCGCTGTCGCCAACCACCCCCACATCCCCCCCAGTGCCAACTTCCTCTTCCCAGCACCCACTTGCTTTTAAGTGGCAAGTCCTTGGCAGAGGTATTTActgatgttattttttatttatttatttatttttcttttcgcCCCCTTGTTCTATTCTCCTGAATAATCCGGACCTGTGCAATAGCAATGCAGTAAAATGCATGATATATGAATGTGGCAatatacttacaaaaaaaaaaaaaaaaaaaaatctaaatgactCTTAAATAAATACTTGACTTTTACAGACACATCTGAACTTCTGAAAAGACGGATGAAATCCAAGGGGGGATTGCTCTTGTCcgaccttttttcttttcttgttggCAACTTGAAGACATACTACATTAATAGAATATAAAGGAGAGACGTGCAGCACTGTAATATATCATATACTTAAAACAAAACTCACGTTTCTTCAAGAGAGATAACTGGAAATGGAAAGATTACAGATGACTACACAGTTCGGTGCTTCCATAAATACGTAATGCAAAGGCCATTGATGAATAGAAGGCGATGTCTTGGTGAATTTTTGTCATgattacattataaaattaCAGACGGAAGCtgaatgagtgccagttaaaaatatattgtttataacaAGCTGTGGTCAATGTGTTCCTCTATCTGCTGTCTGTCCCTCAGACAcgtgttgttttttattgtttgtttttttccacttaTGTAATTTACTCATGTGCCAAATGAACAGCATATTGCTGTAAACAGCATATTGTCCTCACCTTCTGGGGTcgactggggaaaaaaaaaaaaacattttgcctgctttctttctttttctttttgtccaaacatatgtttctttttcttgGAATTGCTCTGTACTGAATCGGATAAAAGACGTACACTCATAGATGAGTGGGGGGAGGAGGAAAAATATCTATGGTTTTGTTCACAGCttcattttttgtgtttacttttCCGAACCTATTTAACAACCTGAAAAAGTTGTGAAAAGACTCATATTGGGGTGGGAGGGGGTGGTTTAGGGTTTATGTCGAGTGGAATGGGATTAGGGTAAGGAAGGTGTTAATTGCCCACCCCATCTATAAAGTTTATTGGTTTATGAATCAacctcagaaaaaaaagtgttatttttataAGCAGCCAGTGCCATCATTCACCTGGAACTACATTTaacagtgaaatatatttaacaacCAAATGTGTATTATTACTGTCTTTAAAAGCTATAAAAACAAGCTATGTATTGTGAAGCAGAGTAAATAATTTGCGATGTATTGAAACACTGTTTAGTTGATGACACGCTTTGATGGAATACATCCTCATCTGGCTTCTCTATGCAAGAACAATATATgcaattaattttatttcttaccATTAAAGAGGTGAACATggttattaaatatgtttaacaaGTGGCCGATAGCACTCACATTGCCATAAATAtctatagtatttatttatttatttatttatttagctcaaATGAGCTTTCCAGTCTTTTAAAACCCAACTATGCATGGCAAAGCAGGCTTTTTCATGTCATTTTTCATTAGTCTTTAGCAATTGTTCACATTTTCTAACGTTTCGCTTGTAATTCCTGAGATACGCACAAGCATACGAGTGTGTTTTTCATGGAGGAGGAGGCGGTGTGAATGATGATATATTACCATTATGGAGATTTGTGCAGCGATCCATTGCTTCTTCTTTCCAAATCCTGTTCTGTTTATCCACTTGATTTGTTTTCAGAGCCAAAGAGTAATCATATTAAAACATTGCCATTGCCTTTCAGGTTTGGAAGTGAGTACCTGATGAAGCGTTAAGCATTTGTTTGAGATAAATATGCAGTCTTTTCGTATCTTTACAGTTTTAAGTTGTGTCTTTGTTGTTCATgtaaaatttgttaaaatcagtaGACTCTGATTCTCAAATTGTAACATTTTCTTTATACTAAGTAAATACTCATATTTTAGTGCCGCTGTCTAGATAAATATGATGGAATTAAGAAGATCAATGTAAAAAACTACAGTAGAGATAAACCTTTGCTGATATTTTGGCAAGTTCCTTTAATGTGAGACTCAAGTTCGCTCATATTTTATGCTTTCGGTTTGTGAGTCGTAGAGCTGTAAACTATAAAATGTGGTCGGTGTGTCTGTGAAATAGGCTTGTGCTAAATTTGAAGGGCTATTTTAAATTATTGGGACAGCTACTGCCCAGATTCGTTTATTTATCaagcatttaaatatatatcagtTCATCCATCTGAAATGAATGTGTACTGCATTACAGTGGGGTAATCAATCTGCAGTCCTGTTGGGCCACAGAAATGCACAGTTTAGTCCTTTACCCATTTCAGACCGGGCAGTTGAGCTTTATGATGGGCTGGAAAATTAGAATCAGAATTAGTGTTTTGGAAGTAGGGTTGCAGTGGTAACTGGatttatagtatattaaaataat
>XM_007246434.3
CGGTCCGGTGCTGTTTGCTGGGGTGAAGGGAGAAGAAATTGAAGCGCCGGTCACGCAGAGAGAGGCACGTTCAGGCTCTCCGTATCCGTTTCACACAACTTCTGGGGGATTGCGCTGCTCTGAGGTGGAGGTCGGGAGTTTGGTTTCTGTGCCAAGCGGACACTGAGAGCGAGGactgagggaaagagagagcgtcCTGTGtagctactattactactactactactactattattactactactactagtggcACTGCTAGCTAGTTGTTGAGCTAAACCTCTATGcaagaattattattaatattactattattattattattattattattattataggctCTCCTGAAGGTCTCACCGCGCTGGCTATGGATTGTCCAGAGTGAACAGCTTCTCAATTTGTTTCATCctgttagttaattagttaactagctagctgtaCCACACAAGCTGCTcttccctcttttttctctctctctatatctttctCTTTAGCTATTACTTTCTCCCTatatctctatttctttctgtctgtctctctgtctatttttctatctctctctatttctccgcGGTCATACAACGTGAACTCGAACCTCACGGTGTGCTAATCAATCGATAGCCACTGTCTGGAAGGAAAATGGTCGCCTCGCCTCTTCCTCTGTGGTCTTAAACACACATGCTTGTTTTTGGCTCTTACCTTTTTCCTAaaacaagcagcagcagcaacaagaagaagaagaacaaggaggagaagaagagtcAGTCCTTCCCCGCCTCGGAAGTCTGAAATCACGCCAGGGATTGTATTGTGCAAGCTAACGGTGGCCCAAAGCTCCTGAGTCTGGCAAAATGTGCAAATTGAACGCACTCGGGATTTATTTGTGGGAAACTATACTGTTTTTCAgCTTGGCAGCATCCCAGCAAGCTGCAGCGCGGAAAGCTGCCTCCCCCATGCCCCCTTCAGAGTTCTTGGACAAACTCATGGGAAAAGTGTCTGGTTACGATGCAAGAATCAGACCTAATTTTAAAGGTCCCCCTGTGAACGTAACatgcaacatttttattaacagTTTTGGGTCCATTGCTGAAACAACAATGGATTACAGAGTGAACATTTTCCTGAGACAGCAGTGGAATGACCCGCGACTGGCCTACAGCGAATACCCCGACGACTCCCTCGACCTGGACCCCTCCATGTTGGACTCCATTTGGAAGCCTGATCTTTTCTTTGCCAACGAAAAAGGAGCCAATTTCCACGAGGTTACCACCGACAACAAGCTCCTGCGCATCTCCAAAAACGGGAACGTGTTATACAGCATAAGGATAACACTGGTTCTGGCCTGCCCTATGGACCTGAAGAACTTCCCTATGGATGTGCAGACCTGTATAATGCAGCTGGAGAGCTTCGGCTACACGATGAATGATCTGATATTCGAGTGGGATGAGAAGGGGGCGGTGCAGGTAGCTGACGGGCTGACGTTACCCCAGTTTATTCTGAAGGAGGAGAAGGACTTGCGCTACTGCACCAAGCACTACAACACAGGCAAGTTCACGTGCATTGAGGCTCGCTTCCATCTGGAGAGACAGATGGGTTATTACTTGATTCAGATGTACATCCCCAGCCTGCTGATTGTTATCTTGTCATGGGTGTCCTTCTGGATCAACATGGACGCCGCCCCTGCTCGAGTTGGCCTGGGCATCACCACTGTGCTGACCATGACCACCCAGAGCTCAGGGTCCAGAGCATCTCTGCCTAAGGTTTCCTACGTGAAAGCCATCGACATCTGGATGGCCGTGTGCCTCCTGTTCGTCTTCTCTGCTCTGCTGGAATACGCCGCTGTCAACTTCATCGCCCGCCAGCACAAGGAGCTGTTGCGCTTCCAGAGAAGGAGACGGCACCTTAAGGAGGATGAAGCAGGAGAAGGCCGTTTCAGCTTCGCTGCGTACGGCATGGGCCCAGCGTGTCTGCAGGCCAAGGACGGTATGGCCATCAAGGGCAACAACAACAACGCCCCCACCTCCAGCATCCCACCCGAGAAGACCGTGGAGGAGATGCGCAAGCTGTTCATCAGCCGCGCCAAGCGCATCGACACCGTGTCCCGTGTGGCCTTCCCCCTCGTCTTcctcatttttaacattttctactGGATCATTTACAAGATCATTCGCAGCGAGGATGTTCACAAGCAGTAAAAAACATCTTGCTAAAAGGGCGAGCCCTGACCGAAAAAGCCGCCGCTGTCGCCAACCACCCCCACATCCCCCCCAGTGCCAACTTCCTCTTCCCAGCACCCACTTGCTTTTAAGTGGCAAGTCCTTGGCAGAGGTATTTActgatgttattttttatttatttatttatttttcttttcgcCCCCTTGTTCTATTCTCCTGAATAATCCGGACCTGTGCAATAGCAATGCAGTAAAATGCATGATATATGAATGTGGCAatatacttacaaaaaaaaaaaaaaaaaaaaatctaaatgactCTTAAATAAATACTTGACTTTTACAGACACATCTGAACTTCTGAAAAGACGGATGAAATCCAAGGGGGGATTGCTCTTGTCcgaccttttttcttttcttgttggCAACTTGAAGACATACTACATTAATAGAATATAAAGGAGAGACGTGCAGCACTGTAATATATCATATACTTAAAACAAAACTCACGTTTCTTCAAGAGAGATAACTGGAAATGGAAAGATTACAGATGACTACACAGTTCGGTGCTTCCATAAATACGTAATGCAAAGGCCATTGATGAATAGAAGGCGATGTCTTGGTGAATTTTTGTCATgattacattataaaattaCAGACGGAAGCtgaatgagtgccagttaaaaatatattgtttataacaAGCTGTGGTCAATGTGTTCCTCTATCTGCTGTCTGTCCCTCAGACAcgtgttgttttttattgtttgtttttttccacttaTGTAATTTACTCATGTGCCAAATGAACAGCATATTGCTGTAAACAGCATATTGTCCTCACCTTCTGGGGTcgactggggaaaaaaaaaaaaacattttgcctgctttctttctttttctttttgtccaaacatatgtttctttttcttgGAATTGCTCTGTACTGAATCGGATAAAAGACGTACACTCATAGATGAGTGGGGGGAGGAGGAAAAATATCTATGGTTTTGTTCACAGCttcattttttgtgtttacttttCCGAACCTATTTAACAACCTGAAAAAGTTGTGAAAAGACTCATATTGGGGTGGGAGGGGGTGGTTTAGGGTTTATGTCGAGTGGAATGGGATTAGGGTAAGGAAGGTGTTAATTGCCCACCCCATCTATAAAGTTTATTGGTTTATGAATCAacctcagaaaaaaaagtgttatttttataAGCAGCCAGTGCCATCATTCACCTGGAACTACATTTaacagtgaaatatatttaacaacCAAATGTGTATTATTACTGTCTTTAAAAGCTATAAAAACAAGCTATGTATTGTGAAGCAGAGTAAATAATTTGCGATGTATTGAAACACTGTTTAGTTGATGACACGCTTTGATGGAATACATCCTCATCTGGCTTCTCTATGCAAGAACAATATATgcaattaattttatttcttaccATTAAAGAGGTGAACATggttattaaatatgtttaacaaGTGGCCGATAGCACTCACATTGCCATAAATAtctatagtatttatttatttatttatttatttagctcaaATGAGCTTTCCAGTCTTTTAAAACCCAACTATGCATGGCAAAGCAGGCTTTTTCATGTCATTTTTCATTAGTCTTTAGCAATTGTTCACATTTTCTAACGTTTCGCTTGTAATTCCTGAGATACGCACAAGCATACGAGTGTGTTTTTCATGGAGGAGGAGGCGGTGTGAATGATGATATATTACCATTATGGAGATTTGTGCAGCGATCCATTGCTTCTTCTTTCCAAATCCTGTTCTGTTTATCCACTTGATTTGTTTTCAGAGCCAAAGAGTAATCATATTAAAACATTGCCATTGCCTTTCAGGTTTGGAAGTGAGTACCTGATGAAGCGTTAAGCATTTGTTTGAGATAAATATGCAGTCTTTTCGTATCTTTACAGTTTTAAGTTGTGTCTTTGTTGTTCATgtaaaatttgttaaaatcagtaGACTCTGATTCTCAAATTGTAACATTTTCTTTATACTAAGTAAATACTCATATTTTAGTGCCGCTGTCTAGATAAATATGATGGAATTAAGAAGATCAATGTAAAAAACTACAGTAGAGATAAACCTTTGCTGATATTTTGGCAAGTTCCTTTAATGTGAGACTCAAGTTCGCTCATATTTTATGCTTTCGGTTTGTGAGTCGTAGAGCTGTAAACTATAAAATGTGGTCGGTGTGTCTGTGAAATAGGCTTGTGCTAAATTTGAAGGGCTATTTTAAATTATTGGGACAGCTACTGCCCAGATTCGTTTATTTATCaagcatttaaatatatatcagtTCATCCATCTGAAATGAATGTGTACTGCATTACAGTGGGGTAATCAATCTGCAGTCCTGTTGGGCCACAGAAATGCACAGTTTAGTCCTTTACCCATTTCAGACCGGGCAGTTGAGCTTTATGATGGGCTGGAAAATTAGAATCAGAATTAGTGTTTTGGAAGTAGGGTTGCAGTGGTAACTGGatttatagtatattaaaataat

Function

symbol description
glra1 Enables extracellularly glycine-gated chloride channel activity and glycine binding activity. Acts upstream of or within several processes, including central nervous system development; regulation of neuron differentiation; and response to amino acid. Is integral component of membrane. Is expressed in brain; hindbrain; and spinal cord. Used to study hyperekplexia. Human ortholog(s) of this gene implicated in hyperekplexia 1. Orthologous to human GLRA1 (glycine receptor alpha 1).

NR:

description
PREDICTED: glycine receptor subunit alpha-1 isoform X3

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process
GO:0043200 response to amino acid biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0007417 central nervous system development biological_process
GO:0034707 chloride channel complex cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0022824 transmitter-gated ion channel activity molecular_function
GO:0016594 glycine binding molecular_function
GO:0016934 extracellularly glycine-gated chloride channel activity molecular_function

KEGG:

id description
K05193 GLRA1; glycine receptor alpha-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246433.3 True 4764 mRNA 0.42 10 37694053 37776716
XM_007246434.3 False 4725 mRNA 0.42 9 37694053 37776716

Neighbor

gene id symbol gene type direction distance location
LOC103027906 LOC108416579,LOC108269025,LOC107662007,LOC107741056,LOC107664772,LOC107717388,LOC102314633 coding downstream 68114 37558694 ~ 37625939 (-)
gm2a gm2a coding downstream 272903 37414592 ~ 37421150 (-)
ccdc69 ccdc69 coding downstream 286624 37392070 ~ 37407429 (-)
LOC103038966 LOC108417621,LOC108268934,LOC107741049,LOC107662002,LOC107563594 coding downstream 408323 37280841 ~ 37285730 (-)
LOC103033714 si:dkeyp-110e4.11,LOC108416539,LOC107741102,LOC107664778,LOC107717397,LOC107598365,LOC108268417 coding downstream 475762 37206239 ~ 37218291 (-)
thoc3 thoc3,LOC107664783,LOC107662035,LOC107598370 coding upstream 267305 38044021 ~ 38048482 (-)
LOC103024433 si:dkey-280e21.3,LOC108417838,LOC108268502,LOC105913081,LOC107664720,LOC107741091 coding upstream 273522 38050238 ~ 38075468 (-)
LOC103022549 tmem216,LOC108416639,LOC108268819 coding upstream 299413 38076129 ~ 38079211 (-)
LOC103023908 NA coding upstream 302671 38079387 ~ 38109064 (-)
LOC103036455 NA coding upstream 335329 38112045 ~ 38128787 (-)
G210347 g3bp1,LOC107683011 non-coding downstream 10551 37677456 ~ 37683502 (-)
G210339 NA non-coding downstream 47184 37646192 ~ 37646869 (-)
G210317 NA non-coding downstream 61358 37632392 ~ 37632695 (-)
G210314 NA non-coding downstream 64147 37626839 ~ 37629906 (-)
G210306 NA non-coding downstream 107397 37585586 ~ 37586656 (-)
G210365 NA non-coding upstream 48503 37825219 ~ 37825820 (-)
G210372 NA non-coding upstream 80322 37857038 ~ 37857373 (-)
G210445 NA non-coding upstream 248708 38025424 ~ 38034469 (-)
G210448 NA non-coding upstream 345779 38122495 ~ 38124887 (-)
G210453 NA non-coding upstream 441559 38218275 ~ 38218728 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 489668 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 883557 36809307 ~ 36810496 (-)
G210059 NA other downstream 983310 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 2934962 34709771 ~ 34759091 (-)
egf NA other downstream 3037569 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 1750917 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 1836999 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 1866828 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 2156400 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 2584542 40361258 ~ 40363237 (-)

Expression


Co-expression Network