LOC103027906 (LOC108416579,LOC108269025,LOC107662007,LOC107741056,LOC107664772,LOC107717388,LOC102314633)


Basic Information

Item Value
gene id LOC103027906
gene name LOC108416579,LOC108269025,LOC107662007,LOC107741056,LOC107664772,LOC107717388,LOC102314633
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37558694 ~ 37625939 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246438.3
CGGCGCGCTCTGAACACCAGAAGAAACAACAAGCCTCGCAGCAGCAGTGAGACAGCGGGTCAGCGGCGGGGTTCACACCGCGCTGGAGATTTAAAACCGGACCGTGCTTTAAATACTGTTATCTGTTTAAGTTGTTAAAGGAAAATGTGGCTGTTCATTCGTCTTTGCTAGTGAAATAAGGCTTCTGCGCGGCCGCAGCGGCTCTCTGGAGCTCCCGTGGCTGGATGAATTGTCTCCACAATAAAAGCAGGGACCAGTGAAACTTCCAGCTGAGCGGAACAGCCATGAATTCAGACATCAACTATCAGGATGgGCCTGCATTCTCCCGTACAGAGGAGAGTCCAACAGAGGACGAAGAGCCCGTCCATTCCCCGTCCCGCATGCAGAGACAGTACGAGCGAATTGGAGGCAGAACCGGATCCTCGTTTTTTCAGACCTTAATTCATTTACTGAAAGGAAACATCGGCACTGGTCTGCTCGGCTTGCCTCTCGCTGTGAAGAATGCAGGGCTTGTGGTGGGTCCTCTGAGTCTCTTCGTGATGGGCATTGTGGCTGTGCATTGCATGCAGATTCTGGTGAAATGTTCCCACCATCTAAGTGCTAAGCTTGGGAAACCGTTCCTGACGTACGGGGATGCAGTAGAGTATGGAATGGAGAATGTGTCTTGGCTGAGGAATCATTCTCGTTGGGGAAGaCGATTGGTGAATATCTTCCTGATCATCACTCAGCTGGGCTTCTGCTGTGTATACTTTGTGTTCCTCAGTGACAACATCAAACAGGTGGTCGAGGCTGCAAACGGGACCACGGTGAACTGCGACACCAACCAGACTGCAGTGATTGTTCCCAGCTACGACTCCCGACTCTACATGCTCTTCATCCTCCCCTTCATCATTCTGCTGGTGTTCACCCGCAACCTCAAATTTCTGGCCCCTTTCTCTTTTGTGGCCAACATAGTCATGTGTGCCAGCCTGGTTCTCATCTACTACTTCTGCCTAACGCATATTCCAAATCCTATTGACCTCCCGAAGGTTGGAAGGCCCATTGACTACCCACTGTTCTTCGGGACAGCTATATTTGCCTTTGAAGGCATTGGTgtgGTTCTACCACTTGagaacaaaatgcaaaaacctCAGAGATTCAGTGCAGTCCTGTACCTTGGAATGGGCATCGTCACTTTTCTGTACATTTCCTTGGGCACCATTGGTTACATCTGCTTTGGAAGTCACATTGGGGGCAGCATTACCCTCAACTTACCAGACTGCTGGATGTACCAGTCAGTTAAGCTGCTCTACTCATTCGGGATCTACATCACGTACGCCCTGCAGTTTTACGTCCCAGCCGAGATCCTGATTCCTCAAGCTGTGGCACGGGTGGACCCCCGGTGGGAGCTGCTGGTGGACCTCAGCATCCGTGTGGGCCTCGTTATCTTAACATGTCTACTGGCCATACTGATTCCAGAGCTGGACCTGGTGATTTCCTTGGTGGGTTCAGTCAGCAGCAGCGCCCTCGCCCTCATCTTGCCACCACTTCTGCAAATCATCACCTTCCATAACGAGGGGCTGTCAAAATGGGCGGTGCTCAAGAACATCATCATCAGCCTTTTTGGCCTGGTGGGCTTCGTGGCTGGGACCTATATTTCCATTGTGGAGATCATCTCACGCAGCAAGTCCAAGCAGATTGACGGGTTCTTTCAGGTCATGTGACGACAGCCCTATTAAACAAAGGGTTTATAGACATCTAAAGCCATTCATTCACTCAAAAAAAGGCCatcaatttaaatttaattatactATGAGATTATTTCAGTCTAGAAAAATGACCTTGGCTGTTTTATAGTGGAACTACCGACCTCATGTGGCTCAGATTTGTCTATTTATTCCTCAGAGCTGGGTTATGGACTTATCACAGTTAGGacctgaattaaaaaaagagaaaaactagtcattaaatgctcttaaaaaatgttttatgtctttgattttatatgtttttaatttaaatgtttgttaattTCTTTTAGTTTACTGGTTTTAATATGCTAACTGgttttaacatgttaaaatgGTCAGAGCACAGTGTTACATAAACTCTTAATCAAATTCATTTTGCATTGATAAAAGCTCTTTTATTCCCTTGAGAACAGAAATACAGGTAATAATTAAAGTTCAgatagttttatttagtaatatGTATAGGGATTATCTGTATAATCTCACTACGGTTAAAGatggttttatgtttcttttttcaatttATGAATCGGTACAGATTTTTTAcacaatattcttttttttctctttgtttttacaaagtgggctttttatttactaaaggATTATTTGTCAATGCACAACAAAGTAAAATGTATgaagtactgttttttttcttggtagTACACCTAGACACGTTActtttagaattaaaaaatgtttacacttaaaaaaaacttttaatagtttaaaaactTAATAGGTTATTCAGGTTTTCTGGAACTAACTGGATCCTTCACACATTAAATGTGATACAAGGCTGTGTTTTTAAGATGAATCACAGATCAtagtcatttttttcagatttgccAAGCCTGATATATGGAGCAAATGATTTCACACCTCAGTTGGCAAAGAAATTCAGATGTGATTTGTCAGACTTATAGGCAAGatgttttaaaatgcaaaaaaaaacaaaaacaaaccatatataccaaaacattattttaggtTCTTTTGTGGGAGATGAAACAGTTGTATATATTTTGAACATCTCTCATAATGTATATTATGCTCACTAAAGAACAGTTGCGATTCATTATAAGGTTTCTTTtttagataatgttttttttttttttaagtttttgtttttggagttttttttttatcatgcatCACATTAGTAGATAGTGtgataagttattttattgaatttattaTGGGTGCCAAACAGAAGAGACCTTGATGTAAAAATTCTTGACATGTTCTGCTGTACTTCATGTTCATGCACTGCACTCATACTACACTTTGTTTTGCAGCtgtagaaatattttttttggtgagCCTTAACATACAGCATGTCCATCGATTGTAAATTTAAGTACaattacactgtaaatgtaaaatgtaaaatgttttttctcaTGACGGGGGCTCGATAGTGTATCATCAGTGTCAACAAGAGTGTAACACCATGAACAGTTGTGTATATTATTTTGATTCAGTGTGTGTCCACATGCTATTTAAAGCCAGaacggtttttttttttactgcatctgTATGTGTTCACATGCTGTCACCTACTGTAGGCTACGGTCTCCGAGTGATAAAAGTGTTCTGTGGAAatgcaaagtgaaataaaaagtgctttgaGATCTC

Function

NR:

description
PREDICTED: proton-coupled amino acid transporter 1-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14209 SLC36A, PAT; solute carrier family 36 (proton-coupled amino acid transporter)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246438.3 True 3368 mRNA 0.41 12 37558694 37625939

Neighbor

gene id symbol gene type direction distance location
gm2a gm2a coding downstream 137544 37414592 ~ 37421150 (-)
ccdc69 ccdc69 coding downstream 151265 37392070 ~ 37407429 (-)
LOC103038966 LOC108417621,LOC108268934,LOC107741049,LOC107662002,LOC107563594 coding downstream 272964 37280841 ~ 37285730 (-)
LOC103033714 si:dkeyp-110e4.11,LOC108416539,LOC107741102,LOC107664778,LOC107717397,LOC107598365,LOC108268417 coding downstream 340403 37206239 ~ 37218291 (-)
LOC111195788 NA coding downstream 452237 37100295 ~ 37106457 (-)
glra1 glra1,LOC107717398,LOC107662012 coding upstream 68114 37694053 ~ 37776716 (-)
thoc3 thoc3,LOC107664783,LOC107662035,LOC107598370 coding upstream 418082 38044021 ~ 38048482 (-)
LOC103024433 si:dkey-280e21.3,LOC108417838,LOC108268502,LOC105913081,LOC107664720,LOC107741091 coding upstream 424299 38050238 ~ 38075468 (-)
LOC103022549 tmem216,LOC108416639,LOC108268819 coding upstream 450190 38076129 ~ 38079211 (-)
LOC103023908 NA coding upstream 453448 38079387 ~ 38109064 (-)
G210242 NA non-coding downstream 235068 37323407 ~ 37323626 (-)
G210235 tmed9,LOC108416549,LOC107662005,LOC107664780,LOC107741051 non-coding downstream 244078 37309378 ~ 37314616 (-)
G210223 lman2 non-coding downstream 256892 37299114 ~ 37301802 (-)
G210197 NA non-coding downstream 330082 37228261 ~ 37228612 (-)
G210173 NA non-coding downstream 430489 37127694 ~ 37128205 (-)
G210314 NA non-coding upstream 900 37626839 ~ 37629906 (-)
G210317 NA non-coding upstream 6453 37632392 ~ 37632695 (-)
G210339 NA non-coding upstream 20253 37646192 ~ 37646869 (-)
G210347 g3bp1,LOC107683011 non-coding upstream 51517 37677456 ~ 37683502 (-)
G210365 NA non-coding upstream 199280 37825219 ~ 37825820 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 354309 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 748198 36809307 ~ 36810496 (-)
G210059 NA other downstream 847951 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 2799603 34709771 ~ 34759091 (-)
egf NA other downstream 2902210 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 1901694 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 1987776 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 2017605 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 2307177 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 2735319 40361258 ~ 40363237 (-)

Expression


Co-expression Network