gm2a (gm2a)


Basic Information

Item Value
gene id gm2a
gene name gm2a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 37414592 ~ 37421150 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246442.3
CGGAAGAAAACATAAATAAGCCCTGATTTCTGCCCACAGCCTGTGTTTAGTATTCACTCAGCTGCTCTTAGGACTGGGTGGTGTTTTATCTAGTCTGCAGTAGGAAGTGACCGGCTGATACTGTGGGAGTTTGCATTGCATCAATTTGCgtgttttaattcagtgtagAGTATAAAGTTCAGTTCTAAACTGTGATTTGCAAAATGACGAGCCCTGCTCCTCTTCTTATCCCTCTTTTAATTGGAAGTGTTCTTTTAATGCAAGTAAGCTGTGATGTGGAGATCAGCAGAACAAGGAGGTTGTCGAAGATTTTGGGATTTTCCTGGGAAAACTGTGGAAAACCTGCTGATCCAGCTGTTCTGAAGGCTCTGAGCTTGTCCCCAGATCCTATTACTATTCCTGGAGATCTGACTGCCAGTGCATCAGGATCCACATCAGTGGCTTTGGTCTCCCCTCTCTCTGTGAATGTCACGCTGGATAAAGAGGTGGCTGGTTTCTGGGTCAAGATTCCGTGTGTAGAAGAGATAGGCAGTTGCCACTATACTGACGCCTGTGATATCTTGAACCAGCTTATTCCTCCAGGCCAGGACTGCCCTGAGCCTCTGCACACCTATGGCCTCCCCTGCCACTGCCCATTCAAAGCAGGTGACTACACTCTGCCTCAGTCTGATTTCTATTTACCAAATTTAGACCTGCCATTCTGGCTGACCAACGGTAACTACCGTGTGCAGGGAGTACTGGGAAACATGGGAAAAGAGCTGGGATGCCTTAAAGTCAGCCTGACCATTCACTCAGAATAATCACCTGAATATGGAGAGTTTGGGATACCTTAATGGGACATTAATGGTTAAATTTCTACCATGGTGAATCCCTTAATTGGGAGAGCTCTGCCTTCTGCTTTATGGTGGTACACAGGCTGAAACTCAAACTCAGTCAGATCTGTTAAATGAGCTGTAAATATCTGAATAGCGGATTTCTTATGATCAGTTTTTGTACAGATAAGAAATGGTACCTGATGATTTTACTTCGGTTATGCTTCACCtgcatttgatttgattttatgagagaggattaaaaaaactgattagATCATAGAAATAATGCACTAGCAGTCATTTTCGGACGCTTTTTAGTACTGATTTTGTTCAATCACTGGAAACAATGAATCGGTCATTTTGGCCTTTCTAATTTTAGTtttgaaatacttttttatatatttttaaatgcctttttattTCAATGTTTACTGAACCAAGAAAAGGGAGAACAGTGACCTTTTCTTTGGTGTGGGAGATCTCATGATGATTAATAATGCTGTCTTTGCACTGGATAATCTGTGTTGTTTATCTTTGGGCCAAAATAAATGTTCTGTGGTTATCAATAAAAGGCTTAAGAAGTGCTTTTCTCAGGA

Function

symbol description
gm2a Predicted to enable lipid transporter activity. Predicted to be involved in ganglioside catabolic process and lipid transport. Predicted to be active in cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in GM2 gangliosidosis and GM2 gangliosidosis, AB variant. Orthologous to human GM2A (GM2 ganglioside activator).

NR:

description
ganglioside GM2 activator-like

GO: NA

KEGG:

id description
K12383 GM2A; ganglioside GM2 activator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246442.3 True 1411 mRNA 0.41 4 37414592 37421150

Neighbor

gene id symbol gene type direction distance location
ccdc69 ccdc69 coding downstream 7163 37392070 ~ 37407429 (-)
LOC103038966 LOC108417621,LOC108268934,LOC107741049,LOC107662002,LOC107563594 coding downstream 128862 37280841 ~ 37285730 (-)
LOC103033714 si:dkeyp-110e4.11,LOC108416539,LOC107741102,LOC107664778,LOC107717397,LOC107598365,LOC108268417 coding downstream 196301 37206239 ~ 37218291 (-)
LOC111195788 NA coding downstream 308135 37100295 ~ 37106457 (-)
polr2g polr2gl,POLR2G,rpb7,polr2g,LOC106604162 coding downstream 327613 37083976 ~ 37086979 (-)
LOC103027906 LOC108416579,LOC108269025,LOC107662007,LOC107741056,LOC107664772,LOC107717388,LOC102314633 coding upstream 137544 37558694 ~ 37625939 (-)
glra1 glra1,LOC107717398,LOC107662012 coding upstream 272903 37694053 ~ 37776716 (-)
thoc3 thoc3,LOC107664783,LOC107662035,LOC107598370 coding upstream 622871 38044021 ~ 38048482 (-)
LOC103024433 si:dkey-280e21.3,LOC108417838,LOC108268502,LOC105913081,LOC107664720,LOC107741091 coding upstream 629088 38050238 ~ 38075468 (-)
LOC103022549 tmem216,LOC108416639,LOC108268819 coding upstream 654979 38076129 ~ 38079211 (-)
G210242 NA non-coding downstream 90966 37323407 ~ 37323626 (-)
G210235 tmed9,LOC108416549,LOC107662005,LOC107664780,LOC107741051 non-coding downstream 99976 37309378 ~ 37314616 (-)
G210223 lman2 non-coding downstream 112790 37299114 ~ 37301802 (-)
G210197 NA non-coding downstream 185980 37228261 ~ 37228612 (-)
G210173 NA non-coding downstream 286387 37127694 ~ 37128205 (-)
G210306 NA non-coding upstream 164436 37585586 ~ 37586656 (-)
G210314 NA non-coding upstream 205689 37626839 ~ 37629906 (-)
G210317 NA non-coding upstream 211242 37632392 ~ 37632695 (-)
G210339 NA non-coding upstream 225042 37646192 ~ 37646869 (-)
G210347 g3bp1,LOC107683011 non-coding upstream 256306 37677456 ~ 37683502 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other downstream 210207 37165034 ~ 37204385 (-)
c24h12orf73 NA other downstream 604096 36809307 ~ 36810496 (-)
G210059 NA other downstream 703849 36710420 ~ 36710743 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 2655501 34709771 ~ 34759091 (-)
egf NA other downstream 2758108 34620461 ~ 34656484 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 2106483 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 2192565 39613715 ~ 39632176 (-)
atp8a1 atp8a1 other upstream 2222394 39643544 ~ 39795943 (-)
LOC103023530 LOC103023530,LOC108418701 other upstream 2511966 39933116 ~ 39940055 (-)
G210991 LOC103042126,LOC108416825 other upstream 2940108 40361258 ~ 40363237 (-)

Expression


Co-expression Network