LOC103028575 (LOC108419324,LOC108269048,LOC107693229)


Basic Information

Item Value
gene id LOC103028575
gene name LOC108419324,LOC108269048,LOC107693229
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40570582 ~ 40582953 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252841.3
CCTCGCGCTACTATTTTTACCGTGCATGCGGTGTTTTGCCTCATGTGTTGGTCCGGCTTGGTAGAATaaatagtagtattagtaagTCACTGACAACATTGTGCAGAAACATATgagttttatttatgatttaaagCCCCCTGACTGCTGGTCTCAGGTTAGAGAGAGTGACACGAAGTGATGAGCTCTTTGgtctacacacaaacacatactgaGGCCGAAGTTCAGCTCCTCCGCTGGAAGTAGGGCAGGCTGGCGAGTAGCAGGCTGATACAGCATATGTGGGCTTTTTTTGTGTAACTATAGCTTGGTGCATTGGAAAAGTCTGTCTGCCTTTAAAACGTGTTTTTAGAAGCTTGAGAACATTCGGAGGCTAATTTGTAGAAAACCCCACGCTGGACTTCAGCCACAATTCCTTCAGAATGAAAATGCTGCGGAAACTGTCCTCCAGTTTAAGGCGACACATTTCAACATCTTGCAGATCTTACAGATATGATAAACTGTTTAAAGTTCACCCCAGTGTGCGTGAGGCTCTGGCTGAACACCGGCCTGTAGTAGCTCTGGAGAGCACCATCATCACCCACGGGATGCCATACCCTCACAACCTGAGcaCAGCCAAGGAGGTGGAGGCCATTGTGAGGGCCAAGGGGGTGACCCCAGCCACCGTGGGAATTCTGGACGGCACCATTCATGTTGGTTTATCTCCAGAGGAGCTGGACTTCATGTCCCGCTGTAAAACAGCCCTGAAGGTGTCCAGGAGGGATTTGCCATATGTTATCAGCAAGGGTCTGTCTGGAGGCACCACTGTCTCAGGCACGATGATCGCAGCCCACAGAGCGGGGATTCATGTTTTTGTGACTGGAGGGATTGGTGGAGTGcacagagatggagagaattCTCTGGATGTTAGTGCAGATCTGACTGAACTCGGACGCACTCCTATCGCAGTGGTGTCCGCTGGGGTGAAGTCCATCCTGGACATTGGACGAACCCTGGAGTTTTTGGAAACTCAGGGGGTCTGTGTAGCCACGTATGGAAAGTCAAAAAGTTTCCCAGCTTTCTTCTCTCCTTCAAGTGGTTTCACATCACCTTACAGTGTCCACAATGCAGAAGAAGCAGCTGAGCTTATTGCAAGCACCCTGTCTCTAGGCCTGCAGAGTGGTGTCCTGCTGGCTGTGCCCATTCCAGAAGAGCATGCTGCTGCTGGACAGGAGATAGAGGGCGCTATTCAGGCTGCAGTGACTGAGGCCAGACTGAAAGGAATCTGTGGAAGAGATGTTACTCCCTTCATCCTGCAGAGAGTCAGTGAGCTCACTGAAGGCCAGTCCCTCCAGGGCAACATAGCTCTCATTCATAATAATGCTAAAGTGGGAAGTGAGATAGCCTGTGCCCTTTCTGAGCGTATGAAGAAATGCCAGAGTGGACCCAGAGGAAGCAGTGAGATCCTGGAGGAGAAGAACCAGCCCTCAAAACCTAAACCTGTTGTCATTGGTGGTGTAAATGTTGACTGCATCGCTAAAGTAACAAAGAAGTTACTGTTTGGACAGACAAACCCAGGGAGTGTGTGCCAGTCATTTGGGGGAGTGGGTCGGAATATTGCAgACTGTCTTAGCAGACTGGGGCACAAACCTCTCTTCATCTCAGCTGTTGGAACGGATACCCATAGCGATGCTGTGCTCAACTACTGTAAGCACATGGACACCAGTGCAGTTGTGAGACTGGAGGGTCAGAGGACTGCCACCTACTGTGCTGTAATCACTGAAAGTGGAGAGCTGAGTCTGGGACTGGGAGATATGGACATCCACCAACAAATCAAAGAGCAACATGTTTGCCAGTATGAGGAACAGCTGTCCTCAGCATCTCTTATCGTTCTTGATGGTAACATTCCTGTTTCTACAATCAACTACGTCTGCAGCGTTGCCAAGAAACATTCAGTTCCAGTGTGGTATGAGCCCACTGATGCTGATAAGGCCTGCAAGCCCTTCCTGTCAGAAAGCTGGAAGGCTCTCTCTTACACATCCCCCAACTTAGCAGAGCTGTGCACCATGAACCGCACTCTTCACCTGCCTACACCAGAAGTGCTACCAGACTCTCCTGAGGATGTGTTGAGCTGTGCAtcgtctctctctcgccctctgcTGGAGCATCTTAATTGTGTGGTGGTGACACTGGGTTCGTTGGGAGTGTTGGTGTGTGGAGAGTATGAAGCAGGATCAGTCCGTCTGCAGCCACGAAAACACCAGCGGAGAGGAAGGCTGTGTGCTGTGTACTATCCTGCACTGGCAGTTCGTTCTGAGGAGACAGTGAATGTGTCTGGAGCGGGAGACAGTCTTGCGGGTGGGATGATGGCAGGGATCTTGCAGGGGAAGGACACACACAGCTGTATGCACATGGGCCTCCTCGCTGCacgcctctctctcttctctcctcaccCCATCACTCCATCTCTGACTTCAGATGCCATCCACCCAGAGAGGGCTCATTCTCAGCCATGGCCAAAACCCACCTGCATGTGGATGGAGTCATAACAGACTAAACTGTTATAATAATCCCATAGAAGCCTCTAAAAAACATGGCAGAGATGAATGCTGGAAAGATTTTGAACATTCCACTGTGCCTTCTTAGCTAATTTACCATCTTCATACTGGATTCGATGATGGGGTGTTGTGTAATTAGAATGTTGTATGTCATTTTAGATGAAAGTCTGCTGAACTGTCCTAGTGTTTCCACTAGATTACCATTGTCTTTATCATGCTATATTATGCATACAGTTTAATTGCTAGAGTTGCTTTTTAAGTCTACCTCATGCCCAGACTGTGGCACTAGCCAACATGTTACATTGATTGGTCACTCATCATTCTGATGCTAATGTACAGTAAAGCCAATTCATTCATGTTCCAGGGTTAAATTTCcatattttagtcatacattttaACCAGTCAATATTTTAGAGCATACTGCACAGTAAATAATCCCAATTCTTGTTTTAGGAGTATATCGTCATTGtctaataaaaaactaaactccC

Function

NR:

description
PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05-like isoform X1

GO:

id name namespace
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG:

id description
K16330 K16330; pseudouridylate synthase / pseudouridine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252841.3 True 3028 mRNA 0.48 19 40570582 40582953

Neighbor

gene id symbol gene type direction distance location
LOC103045095 LOC103045095,LOC107590823,LOC107753557,LOC108268426,LOC106608917,LOC101062121 coding downstream 215306 40327839 ~ 40355276 (-)
gtse1 NA coding downstream 245142 40318789 ~ 40325440 (-)
actr6 actr6,arp6 coding downstream 252770 40312884 ~ 40317812 (-)
LOC103043462 sycp3,LOC103043462,LOC107666284,LOC107590858,LOC108269409 coding downstream 257841 40308494 ~ 40312741 (-)
LOC103042952 LOC103042952,LOC107695597,LOC107577899 coding downstream 263199 40302159 ~ 40307383 (-)
LOC103027945 NA coding upstream 1412 40584365 ~ 40590468 (-)
dnm1l dnm1l,LOC107716704 coding upstream 104839 40687792 ~ 40704331 (-)
dnajb9 dnajb9,dnajb9a,LOC108419513,LOC107576388,LOC107716654,LOC107678282 coding upstream 122176 40705129 ~ 40710254 (-)
LOC103032053 kctd15a,LOC103032053,LOC108419575,LOC108269135,LOC107678290,LOC107554942,LOC107661476,LOC107716706 coding upstream 184100 40767053 ~ 40787591 (-)
LOC103031733 chst8,LOC108416858 coding upstream 212584 40795537 ~ 40870630 (-)
G211058 NA non-coding downstream 3405 40566889 ~ 40567177 (-)
LOC111195793 NA non-coding downstream 17887 40551912 ~ 40552695 (-)
LOC103026547 NA non-coding downstream 18803 40550281 ~ 40551779 (-)
LOC111195848 NA non-coding downstream 20310 40544773 ~ 40550272 (-)
LOC111195797 NA non-coding downstream 26415 40534851 ~ 40544167 (-)
G211085 NA non-coding upstream 28144 40611097 ~ 40611720 (-)
G211119 NA non-coding upstream 46419 40629372 ~ 40717113 (-)
LOC111195798 NA non-coding upstream 68712 40651665 ~ 40652046 (-)
G211140 LOC108419529,LOC108269134,LOC108431712,LOC105892636,LOC107554941 non-coding upstream 132577 40715530 ~ 40718202 (-)
G211141 LOC108419529,LOC108269134 non-coding upstream 135367 40718320 ~ 40726184 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other downstream 434 40558684 ~ 40570148 (-)
G210995 NA other downstream 192229 40372805 ~ 40378353 (-)
G210991 LOC103042126,LOC108416825 other downstream 207345 40361258 ~ 40363237 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 630527 39933116 ~ 39940055 (-)
atp8a1 atp8a1 other downstream 774639 39643544 ~ 39795943 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 576277 41159230 ~ 41219443 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other upstream 723993 41306946 ~ 41310751 (-)
LOC103022682 NA other upstream 1010378 41593331 ~ 41600623 (-)
G211539 NA other upstream 1622183 42205136 ~ 42205636 (-)
LOC103029763 NA other upstream 1698804 42281757 ~ 42361599 (-)

Expression


Co-expression Network