LOC103032053 (kctd15a,LOC103032053,LOC108419575,LOC108269135,LOC107678290,LOC107554942,LOC107661476,LOC107716706)


Basic Information

Item Value
gene id LOC103032053
gene name kctd15a,LOC103032053,LOC108419575,LOC108269135,LOC107678290,LOC107554942,LOC107661476,LOC107716706
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40767053 ~ 40787591 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007252853.3
ATCACTTTCACCTTCCCTTCTTCCGTGAGGGTTAAAATGTGTTGGTGTGTCGCCGCGGTGAAGCTGCCTGTCTCTGCCTGGCTGAGAGATGCCATTAAAGGCTGGAGGGTCTCCATCTGACCGTGCTGGAGATGGAAATGGCGCGTTTGGCCGCAGGCGGGCTGTGGGGGCGCTTTCTGCTCTGCGTGCGTTCACGTTCATACACTCCGTCCTGCTTTAATGCACAGCGCCATATGACAACAGATACGGGGGTTTATTTATACAAGTTGGGGTCCTGTTTCCTAAAACGTAGTTAGTGTGTAGTAGTGCTCTTCTTGAATAAAACAGCAGATTGCGCGGTGTTGGAGCTATTATAGTGAGCTATTATAAACAGCTGAAtttaggagagagagagatactggaGTAGCTTAACagttaatgtattattttctattaagcttttagcttttctttcttgtgtttttgtttgttttgctgtagTTAAGTTTATTAAGGCAGATGCGGCTGAAATGCTGAAATGAACACCAGCTGTGTGTGGTAATATGACAGGTCACAGGtacttagctaggttagctaatagcTAGTTAACGATAAAACACCGCAGCTCGGATGTGTTTGTCGTTggaacaggtaaaaaaaaactgatttaattcGTTGGTAAATGTGCGTATGCGTTTCCACGTATGAATAAGCGAGATCAAGTGTTCCTGTGCTCAGGCAAGGCTGAGCTAATTGGAGGCTAATCCTTTGCCCCCGGGGGGCGAGCCGAGAGCCCGGAGCGAGACTTCATCTCTCCCAGCCCCTGTCCTCTGTTATTCGGGGAGGAAACGCCTGGCTTCGGTGCGCGCTCTCTCTCACGCCTCAGCCAACAACAAAAAGAAGGAGCTAGAAATAGAAAACACGCGAGGAAAAGACGAGGGGATCGATCTCATGTTTTAAAAGAGGAGAAGGAAGATACCACAGCAGCGATGTCTTCCTCCAAGGAGGGAAGAAGCATGTCTCGTCTCTCTCTGACCCGCTCTCCGGTGTCTCCTCTGGCCGCTCAGGGGATCCCTCTCCCAGCTCAGCTGACTAAAGCCAACGCTCCAGTGCACATTGACGTAGGAGGACACATGTACACCAGCAGCCTGGCCACACTCACCAAGTACCCCGACTCAAGAATAAGTCGGCTGTTCAACGGCACAGAGCCGATCGTGTTGGACAGTCTGAAGCAGCACTATTTCATCGACAGGGATGGAGAGATATTCCGTTACATTCTGAGCTACCTCCGGACCAGCAAGCTGCTTCTGCCTGAAGACTTCAAGGAGTTCCAGCTGCTGTACGAGGAGGCCCGCTACTACCAGCTGAGCCCCATGGTGAAGGAGCTGGAGCGCTGGAAGCAGGAGCGTGAGCAGCGGCGGACATCACAGCCCTGCGAGTGTCTGGTGGTGCGTGTGACCCCTGACCTGGGTGAGCGGATCGCTCTGAGTGGCGATAAGGCCCTCATCGAGGAGATCTTCCCTGAGACAGGAGATGTCATGTGTAACTCAGTCAACGCCGGCTGGAACCAGGACCCCACTCACGTCATCCGCTTCCCACTCAATGGATACTGCAGACTCAACTCCGTACAGGTGCTGGAGAGATTGTTCCAGAAAGGCTTTGCCATGGTGGCATCATGTGGCGGGGGAGTGGACTCGTCTCAGTTCAGCGAGTACATCCTGAGTCGTGAGGACAGACGCTGTCAGACCATTCACACACCCATCCGGATAAAGCAGGAGCCGCTGGACTAGCAAGTCGAGCAGAAACTCCTCAGACTGACCCTCAGCGGTGAGAGGCCGGCAGTGGACAGTAAGGAGATGGCAAAATGGATCAAGTGTGTGCCTCTCTGCTGGACTTCTTGGACTATTTAGGAGTTTGTGAAGATGGAACTCTTAATctagataataaaaaaactcttcaGAGACTGAATTGACAGATGtcttgatgaaaaaaaaagaacaaaaactgacaaaaagaaGAAGTCTTGGCTTGGAGGAAAAACAGCATTCTGTATATTTTGGTCTTCCACATACCAGAGCATACTCTTCCGGCATTTACTTAGTCATGACCTCATCTGTTTTAATGCAGAAATCAATCATTTCTGCATACCAATCGCCCCTCGCCTCAGCACCACCATTGGGAAATATTCTGATCTCATGTTCCAGTCTCTTTCTGTAAATcagttctttgtgtgtgtgtgtgtgagattcaCCATATATGAAGGATGTGAGAACAGCACTGAGAACAAAGGCATTTGATTGCGAGTGCAGAGTGGAGGGGAGTTGGCTGCCTGGACTGGCCGCAGGCTGCATGGCCTGAGCGTTAGGGCTACTAATGCATCCAGAGCCGCGGAGAGGGGCTGGCTGTTAGAGCACAGCCACAGGGAGACCTGTGCTTATTTCAGGAGAGCTTTTCCAATCTTCAGGAACACAGAGAGCCACCACAAAAACAATGATGgctggtagtttttttttattttttatttaagtcagCAACAATACTGTCATCCAGTCTCAGATAAGTTAATATCTCCACATAAATATTTCGAATTTACACGCCTGTATAACTATGGTGGCTGCATTTTACTGAAGGGTGGCATTCCTAAGGTTAAAGCAggattctttttctttttaagaaaaataaaaaaaaacttttccaggACACGCAGCTTAACTTAATATTTCCAGCTTATGCTAGGAACTGTTACACAGCTGACAAtgtgtgtaacaatgtgtgagACACATGTTAAACAGTGTCAAATTCACCAACAAAAGTATTCATTTATTGAGCAGTTATTTACGTACCCATCTATGACATTACACCCTGTTAAACACGGTGCAGTGTAACAGAACTGTCTCCATCAAAACTAATAATGCATCAGACAAAAATCTAAGTTTAATCTTAACTTAGTTTAAGATTAACTTtcttcatattcataacatatcctgtttttttttagaagtttatttttattttaaaatagtttccaTGAAAACACAATTCAGTCGGCTTATTCTTATTTCAAGTCATAGTTTGTATCATTAGAGGTTGGGTGTAGGAGTCCTATCATAAACCTTGTGAAAATTGTTAGCCTTCAGCAAAGTGTTAGCCATATGATTAGAAACCTCTAATCAAGAAATATCTGCTTGTGAAATGATGGTGGGTGACTTATTTATTACCTTTTAAATCTGAGGTTGCTGTGAAGTGTTCTTTTGTTGATGCTATAAACAATGAAAGAAGTGCTGGATTGGAACAATGGTTCTTCTATGGTATCGCTTAAATAACCCTTTGAAGTGGATTAAATTCAAACTCATCTGCAGAACACTAAAGAACATTAAATCATATTGATAAAAGGTCAAATAAAGCAAGCAAGCAGTGCTTCCTGGATCCCACAGGAAGCTCTTTTCATGAAGGCAGCATTAGGTAGGGGAAATGAGAGATTACTCAGATTAATGAACACAGGGCTGCGATACTGCTCTTCCTGCATGGTCGGAGTTGCTGGCGGAGCTGGTCCTACCAGAGCAGAAGGGGGCTTAGTGTGCTCCTTGAGGGGCCCATCAGGGCTGAGGCGGAAGGGCACGGGTCAGAGAGAAGCTAGACTCCTCCCCACACTGCCCCAGGAGCTGAGGTCACTTTCCCACAATCCTTTTACTCACCCGGACCCCCGAGCCAAACAAGCCCAGTCATAGGGAGGAGAGCGTACGGCGCGCGGGCAGCTGGAGGAAGATGGAAAGGTTACTTAGGTGGCTGGGAAACAGCGAGCGATGCTTAATGTGTTGtaaaaatgcacatttaatAGCCCCAGTATTCTTTAGGCTCTGTAACCTCATTAAGAGGGCAGAGGTCACAGAGATGCCACCATGTTCTACAAGATCAGGCGCTGAGTGTTGTCTTACTAAGACAGTATGAACGTGCCGAGACCTTATTCTTCACGCTATCCACTGAAAGTGATGCTCTGGTTCGCCCTGACCCTCATGCAGTGGGTGTTGTGAGGGGGCTTGTTGCAAATTTTACCATCACAGTTATAGCagataatacactgtaaaaacatgtCGTTTGTGTTGGAGTTTTTGGTATTTCATCAAACGATAAAGAAAATGCTTCCACCAGCCATGCAACTGGATTTCAGACCACAGACACAGAAATGGATCTCATACATACACTGAGAACTTCAAGAAAGGACTTCGGTATGGACCATAAAGAACTaagaaaaatcttaatttaaataCTGTTCTAATGGAtgttgtgtcaaaatgtataatattacaGTAAGGTGCAAATGTtaactattatttaaataaagctcattacgtttctttttttgttcataCATAATTATTAAGAAACATTGTAGTAGTGCAGGCATGTGTTCACTATCCTTTTGTAATTGGTGTTGATCAAATGgacttttaataaattgttgGACTTTTTTTCCTAA
>XM_007252854.3
ACGCTGGCGCTCAGTAGAAAGGCTCCAGCAGCCGCTGCCAAAACAGCTCTTGTGTTAAAACCGAGTTTTTTTAAAGCTACAGCGACCTATATAGTGAGCTAGCGTggctagctctttctctgtttcggTTTAGCGTTTATCAGGATCTCTACAAACTGCCTTAGTAGGATTTTTGGGACTTTTTTGGCTGCAAAACCGAGTTCCGTTGATTTATTTTGGGATTTTATCCGGAGCGTCGGGGGCAGGCGAGCTAACGCTGGTTCGCCCAAGTTGCCTGAGAAACGGAGAAACCTGCTGGAGTCCGAGCCGCAGATTCGCGTCCAGATTCGCTCCGGACCTCCTAAAATGTTTGAAACGGAGGGAAGAAGCATGTCTCGTCTCTCTCTGACCCGCTCTCCGGTGTCTCCTCTGGCCGCTCAGGGGATCCCTCTCCCAGCTCAGCTGACTAAAGCCAACGCTCCAGTGCACATTGACGTAGGAGGACACATGTACACCAGCAGCCTGGCCACACTCACCAAGTACCCCGACTCAAGAATAAGTCGGCTGTTCAACGGCACAGAGCCGATCGTGTTGGACAGTCTGAAGCAGCACTATTTCATCGACAGGGATGGAGAGATATTCCGTTACATTCTGAGCTACCTCCGGACCAGCAAGCTGCTTCTGCCTGAAGACTTCAAGGAGTTCCAGCTGCTGTACGAGGAGGCCCGCTACTACCAGCTGAGCCCCATGGTGAAGGAGCTGGAGCGCTGGAAGCAGGAGCGTGAGCAGCGGCGGACATCACAGCCCTGCGAGTGTCTGGTGGTGCGTGTGACCCCTGACCTGGGTGAGCGGATCGCTCTGAGTGGCGATAAGGCCCTCATCGAGGAGATCTTCCCTGAGACAGGAGATGTCATGTGTAACTCAGTCAACGCCGGCTGGAACCAGGACCCCACTCACGTCATCCGCTTCCCACTCAATGGATACTGCAGACTCAACTCCGTACAGGTGCTGGAGAGATTGTTCCAGAAAGGCTTTGCCATGGTGGCATCATGTGGCGGGGGAGTGGACTCGTCTCAGTTCAGCGAGTACATCCTGAGTCGTGAGGACAGACGCTGTCAGACCATTCACACACCCATCCGGATAAAGCAGGAGCCGCTGGACTAGCAAGTCGAGCAGAAACTCCTCAGACTGACCCTCAGCGGTGAGAGGCCGGCAGTGGACAGTAAGGAGATGGCAAAATGGATCAAGTGTGTGCCTCTCTGCTGGACTTCTTGGACTATTTAGGAGTTTGTGAAGATGGAACTCTTAATctagataataaaaaaactcttcaGAGACTGAATTGACAGATGtcttgatgaaaaaaaaagaacaaaaactgacaaaaagaaGAAGTCTTGGCTTGGAGGAAAAACAGCATTCTGTATATTTTGGTCTTCCACATACCAGAGCATACTCTTCCGGCATTTACTTAGTCATGACCTCATCTGTTTTAATGCAGAAATCAATCATTTCTGCATACCAATCGCCCCTCGCCTCAGCACCACCATTGGGAAATATTCTGATCTCATGTTCCAGTCTCTTTCTGTAAATcagttctttgtgtgtgtgtgtgtgagattcaCCATATATGAAGGATGTGAGAACAGCACTGAGAACAAAGGCATTTGATTGCGAGTGCAGAGTGGAGGGGAGTTGGCTGCCTGGACTGGCCGCAGGCTGCATGGCCTGAGCGTTAGGGCTACTAATGCATCCAGAGCCGCGGAGAGGGGCTGGCTGTTAGAGCACAGCCACAGGGAGACCTGTGCTTATTTCAGGAGAGCTTTTCCAATCTTCAGGAACACAGAGAGCCACCACAAAAACAATGATGgctggtagtttttttttattttttatttaagtcagCAACAATACTGTCATCCAGTCTCAGATAAGTTAATATCTCCACATAAATATTTCGAATTTACACGCCTGTATAACTATGGTGGCTGCATTTTACTGAAGGGTGGCATTCCTAAGGTTAAAGCAggattctttttctttttaagaaaaataaaaaaaaacttttccaggACACGCAGCTTAACTTAATATTTCCAGCTTATGCTAGGAACTGTTACACAGCTGACAAtgtgtgtaacaatgtgtgagACACATGTTAAACAGTGTCAAATTCACCAACAAAAGTATTCATTTATTGAGCAGTTATTTACGTACCCATCTATGACATTACACCCTGTTAAACACGGTGCAGTGTAACAGAACTGTCTCCATCAAAACTAATAATGCATCAGACAAAAATCTAAGTTTAATCTTAACTTAGTTTAAGATTAACTTtcttcatattcataacatatcctgtttttttttagaagtttatttttattttaaaatagtttccaTGAAAACACAATTCAGTCGGCTTATTCTTATTTCAAGTCATAGTTTGTATCATTAGAGGTTGGGTGTAGGAGTCCTATCATAAACCTTGTGAAAATTGTTAGCCTTCAGCAAAGTGTTAGCCATATGATTAGAAACCTCTAATCAAGAAATATCTGCTTGTGAAATGATGGTGGGTGACTTATTTATTACCTTTTAAATCTGAGGTTGCTGTGAAGTGTTCTTTTGTTGATGCTATAAACAATGAAAGAAGTGCTGGATTGGAACAATGGTTCTTCTATGGTATCGCTTAAATAACCCTTTGAAGTGGATTAAATTCAAACTCATCTGCAGAACACTAAAGAACATTAAATCATATTGATAAAAGGTCAAATAAAGCAAGCAAGCAGTGCTTCCTGGATCCCACAGGAAGCTCTTTTCATGAAGGCAGCATTAGGTAGGGGAAATGAGAGATTACTCAGATTAATGAACACAGGGCTGCGATACTGCTCTTCCTGCATGGTCGGAGTTGCTGGCGGAGCTGGTCCTACCAGAGCAGAAGGGGGCTTAGTGTGCTCCTTGAGGGGCCCATCAGGGCTGAGGCGGAAGGGCACGGGTCAGAGAGAAGCTAGACTCCTCCCCACACTGCCCCAGGAGCTGAGGTCACTTTCCCACAATCCTTTTACTCACCCGGACCCCCGAGCCAAACAAGCCCAGTCATAGGGAGGAGAGCGTACGGCGCGCGGGCAGCTGGAGGAAGATGGAAAGGTTACTTAGGTGGCTGGGAAACAGCGAGCGATGCTTAATGTGTTGtaaaaatgcacatttaatAGCCCCAGTATTCTTTAGGCTCTGTAACCTCATTAAGAGGGCAGAGGTCACAGAGATGCCACCATGTTCTACAAGATCAGGCGCTGAGTGTTGTCTTACTAAGACAGTATGAACGTGCCGAGACCTTATTCTTCACGCTATCCACTGAAAGTGATGCTCTGGTTCGCCCTGACCCTCATGCAGTGGGTGTTGTGAGGGGGCTTGTTGCAAATTTTACCATCACAGTTATAGCagataatacactgtaaaaacatgtCGTTTGTGTTGGAGTTTTTGGTATTTCATCAAACGATAAAGAAAATGCTTCCACCAGCCATGCAACTGGATTTCAGACCACAGACACAGAAATGGATCTCATACATACACTGAGAACTTCAAGAAAGGACTTCGGTATGGACCATAAAGAACTaagaaaaatcttaatttaaataCTGTTCTAATGGAtgttgtgtcaaaatgtataatattacaGTAAGGTGCAAATGTtaactattatttaaataaagctcattacgtttctttttttgttcataCATAATTATTAAGAAACATTGTAGTAGTGCAGGCATGTGTTCACTATCCTTTTGTAATTGGTGTTGATCAAATGgacttttaataaattgttgGACTTTTTTTCCTAA

Function

symbol description
kctd15a Acts upstream of with a negative effect on canonical Wnt signaling pathway. Acts upstream of or within several processes, including neural crest cell differentiation; pharyngeal system development; and regulation of RNA biosynthetic process. Is expressed in several structures, including ectoderm; nervous system; neural tube; presumptive ectoderm; and solid lens vesicle. Orthologous to human KCTD15 (potassium channel tetramerization domain containing 15).

NR:

description
BTB/POZ domain-containing protein kctd15-like isoform X1

GO:

id name namespace
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0051260 protein homooligomerization biological_process
GO:0044335 canonical Wnt signaling pathway involved in neural crest cell differentiation biological_process
GO:0060037 pharyngeal system development biological_process

KEGG:

id description
K21754 KCTD1_15; BTB/POZ domain-containing protein KCTD1/15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007252853.3 True 4456 mRNA 0.45 5 40767053 40787591
XM_007252854.3 False 3830 mRNA 0.45 5 40767053 40786574

Neighbor

gene id symbol gene type direction distance location
dnajb9 dnajb9,dnajb9a,LOC108419513,LOC107576388,LOC107716654,LOC107678282 coding downstream 56799 40705129 ~ 40710254 (-)
dnm1l dnm1l,LOC107716704 coding downstream 62722 40687792 ~ 40704331 (-)
LOC103027945 NA coding downstream 176585 40584365 ~ 40590468 (-)
LOC103028575 LOC108419324,LOC108269048,LOC107693229 coding downstream 184100 40570582 ~ 40582953 (-)
LOC103045095 LOC103045095,LOC107590823,LOC107753557,LOC108268426,LOC106608917,LOC101062121 coding downstream 411777 40327839 ~ 40355276 (-)
LOC103031733 chst8,LOC108416858 coding upstream 7946 40795537 ~ 40870630 (-)
adal adal,LOC107753575 coding upstream 103940 40891531 ~ 40896561 (-)
LOC103033419 cplx3,LOC103033419,LOC107753702,LOC107576377,LOC107678284,LOC107661513,LOC107554944 coding upstream 109301 40896892 ~ 40902164 (-)
LOC103033740 csk,LOC108419600,LOC106562350 coding upstream 125492 40913083 ~ 40945688 (-)
edc3 edc3,LOC107678287,LOC107716710,LOC107661473,LOC107753578 coding upstream 163427 40951018 ~ 40959531 (-)
G211141 LOC108419529,LOC108269134 non-coding downstream 40869 40718320 ~ 40726184 (-)
G211140 LOC108419529,LOC108269134,LOC108431712,LOC105892636,LOC107554941 non-coding downstream 48851 40715530 ~ 40718202 (-)
G211119 NA non-coding downstream 49940 40629372 ~ 40717113 (-)
LOC111195798 NA non-coding downstream 115007 40651665 ~ 40652046 (-)
G211085 NA non-coding downstream 155333 40611097 ~ 40611720 (-)
G211242 NA non-coding upstream 103223 40890814 ~ 40911636 (-)
G211450 NA non-coding upstream 1066207 41853798 ~ 41865986 (-)
G211449 NA non-coding upstream 1079169 41866760 ~ 41872555 (-)
G211517 NA non-coding upstream 1293129 42080720 ~ 42080968 (-)
G211528 NA non-coding upstream 1394785 42182376 ~ 42182687 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other downstream 196905 40558684 ~ 40570148 (-)
G210995 NA other downstream 388700 40372805 ~ 40378353 (-)
G210991 LOC103042126,LOC108416825 other downstream 403816 40361258 ~ 40363237 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 826998 39933116 ~ 39940055 (-)
atp8a1 atp8a1 other downstream 971110 39643544 ~ 39795943 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 371639 41159230 ~ 41219443 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other upstream 519355 41306946 ~ 41310751 (-)
LOC103022682 NA other upstream 805740 41593331 ~ 41600623 (-)
G211539 NA other upstream 1417545 42205136 ~ 42205636 (-)
LOC103029763 NA other upstream 1494166 42281757 ~ 42361599 (-)

Expression


Co-expression Network