G50735


Basic Information

Item Value
gene id G50735
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 538171 ~ 538511 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU57733
AGACATGATACGGATTTCGGTAAGTTGTACTGTGTATTTTAACATACCTTCAGATGTTTATTCATGTTTATTTCGCGCTGTAACTGGTATTAAAGCGGAGGAGAGGATGTTCACATGCGCTCCGTGCTGCCGCTTCTCTTTAACTGAGGCGCTAAAGCGATCTGTCACGTCACATTAAACAGCGCCAAAACGGTGTTTATTTTTTGAATCTCATAATAAGATGGACGTCATTTGAAATCTGAGACTTTGCTTCATATCAAAAGTAACAAAGCACAAAGATTATTGCGATTTATTGGTGGGAGGCGCTACATGTTCTGTTCATTTATCAACTGAAAACAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57733 True 341 lncRNA 0.32 1 538171 538511

Neighbor

gene id symbol gene type direction distance location
CI01000009_00378726_00379550 NA coding upstream 158367 378726 ~ 379804 (+)
CI01000009_00363403_00368182 RNASEH2B coding upstream 169955 363403 ~ 368216 (+)
CI01000009_00343750_00344964 TRIM13 coding upstream 192881 343750 ~ 345290 (+)
CI01000009_00326208_00333904 NA coding upstream 203870 326208 ~ 334301 (+)
CI01000009_00318494_00322434 NA coding upstream 215116 318256 ~ 323055 (+)
CI01000009_00541592_00545933 CMSS1 coding downstream 2258 540769 ~ 545997 (+)
CI01000009_00547369_00551459 NA coding downstream 8858 547369 ~ 552216 (+)
CI01000009_00603498_00605392 NA coding downstream 64717 603228 ~ 605392 (+)
CI01000009_00605366_00605964 COL8A1, COL8A1A coding downstream 66855 605366 ~ 606070 (+)
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding downstream 70002 608513 ~ 609375 (+)
G50719 NA non-coding upstream 33552 504418 ~ 504619 (+)
G50631 NA non-coding upstream 42210 395375 ~ 495961 (+)
G50633 NA non-coding upstream 149049 388750 ~ 389122 (+)
G50639 NA non-coding upstream 149519 388198 ~ 388652 (+)
G50627 NA non-coding upstream 152763 381214 ~ 385408 (+)
G50855 NA non-coding downstream 51621 590132 ~ 590613 (+)
G50881 NA non-coding downstream 85223 623734 ~ 623957 (+)
G50883 NA non-coding downstream 97963 636474 ~ 636705 (+)
G50880 NA non-coding downstream 106274 644785 ~ 645049 (+)
G50878 NA non-coding downstream 155515 694026 ~ 695215 (+)
CI01000009_00094836_00095813 NA other upstream 442384 94371 ~ 97230 (+)
G50920 NA other downstream 231330 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 884336 1429873 ~ 1435328 (+)
G51122 NA other downstream 1141635 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1355724 1897343 ~ 1919516 (+)
G51274 NA other downstream 1716588 2255099 ~ 2350486 (+)

Expression


Co-expression Network