ccdc113


Basic Information

Item Value
gene id ccdc113
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 25270141 ~ 25277760 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602397.2
GCCTTTAAGCTCCGCTGTCCTCCTCGGCGACGGCCATgtttaccatagcaaccatgaAGGATCCGGAGAAAGGCAGCTTTACTAAAGCAGATATGAAACTAACGCGTGAACAGCTGGAAGACTTGAGGCGTTTCAATGCAGCCTTACAGGCTGAGAATGAGATGTTTGAGCACCAAGCCCTGGTTTCTCAGGCTGTGCCAGAACATTTGGGTTCTGTTGCATCAATGGCACATGGGCATCCCGGGCGCAGGAGGCAATCTAAAGTTCTGAGGCCATCTCAGAAGGAATCATCACAGCTGCTGGGGCTGGAGCAGAAGGTTTTCATTGCTcagagggagatggaggagcTGAGGAATGATCTGGAGAAGCTAAGACAAAGTTCAGACAAGGAGACTCCTGCAAAGAGGCTGTGTCAGAAAAACACGGCTCGTCACACACAGAAGcgtaagctaaaactaaaaatgaggCAGAAAGAGGAGGTGGAAAAAACTTTTCACAAGGTGGATCTCCAGAAGCTGAAGATCGAGAAGAGACAGTATATTGAGCAAATTGACAAACTTAGCCAGGACCTGCAGCAACTCAGTGTGCAAGGTGGAAACATGCTGAAGGTCTTCAATCAAAACAGGACAAAGCTTCAGAGCTTGACTCTTGAGTCAGAGTCGCTGAGCAGTGACATAGCCTCGCGTGAAGGCATGCTCATGAAGCTTGAGGAACAAACTCAGCAGGTGGAGAAGGAGCGTGCTAAAGCCGAGTCTAAGAACAAGAAACTGAGAACACGGCTGTCCGATTTCCACGTGCCAGATGTGCTCAGCTACGTTGAGGTCAATGCTTTACACACCAAGCTGGAACAGGACAACAGGTTTTGCGAACGCAAGGTGGCAATCGCAGAGatgGGATTGAAGACTCTCACCAAAGCATGGAACAAGCATCGAGCTACAGCTGAGGCGGCACTGCCACCCATATAAACATCTACCGTAATGAAGCTTCTGTTACCTGCTCAATTGCAATGCTAAAGAAGCCTTCATGTGATTGGTTCTATTGTAGAATAGCCGAAACACAGGGTTCACCTGTTCGGTGTGTTCAGATTCTGATTATAAGTATTTAAATCATTATGccacaaaatgtgttttgtcaCTTACGTATTGCATTATTACTTCACCTCTTCCTGCATATTAGCTAATAAACTCTTAGcggtcttgtg

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0005929 cilium cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602397.2 True 1201 mRNA 0.47 7 25270141 25277760

Neighbor

gene id symbol gene type direction distance location
drc7 NA coding downstream 39130 25212565 ~ 25231011 (-)
c24h11orf49 cunh11orf49,c8h11orf49,zgc:92873,LOC107707434 coding downstream 119152 25143991 ~ 25150989 (-)
LOC103042358 chst1,LOC108428115,LOC107714082,LOC107572125,LOC107654173,LOC107707501,LOC107674940 coding downstream 359368 24904570 ~ 24910773 (-)
LOC103044011 NA coding downstream 439178 24813330 ~ 24830963 (-)
LOC111195752 LOC108428077 coding downstream 482118 24779413 ~ 24788023 (-)
LOC103040081 snrkb,LOC108413384,LOC108268812,LOC107674965,LOC107589179,LOC107571964,LOC107714071 coding upstream 134426 25412186 ~ 25452091 (-)
znrf1 znrf1,LOC107589180,LOC107714072 coding upstream 218541 25496301 ~ 25572271 (-)
LOC103040521 NA coding upstream 403470 25681230 ~ 25685611 (-)
LOC111195867 NA coding upstream 814410 26092170 ~ 26095191 (-)
LOC111195834 NA coding upstream 819045 26096805 ~ 26099827 (-)
G207874 ckap5,LOC108269026 non-coding downstream 76468 25191237 ~ 25193673 (-)
G207881 ckap5,LOC108269026 non-coding downstream 103463 25153628 ~ 25166678 (-)
G207781 NA non-coding downstream 224524 24962572 ~ 25045617 (-)
G207768 NA non-coding downstream 323613 24897302 ~ 24946528 (-)
G207767 NA non-coding downstream 377878 24891733 ~ 24892263 (-)
G207886 csnk2a2,csnk2a2b,LOC106573643 non-coding upstream 1605 25279365 ~ 25299692 (-)
G207926 NA non-coding upstream 152244 25430004 ~ 25430323 (-)
G207928 NA non-coding upstream 160289 25438049 ~ 25442155 (-)
G207934 NA non-coding upstream 186781 25464541 ~ 25467095 (-)
G207938 NA non-coding upstream 276487 25554247 ~ 25557367 (-)
usb1 NA other downstream 9974 25251235 ~ 25260167 (-)
G207772 NA other downstream 321290 24948131 ~ 24948851 (-)
G207707 polr2c other downstream 741074 24524734 ~ 24529067 (-)
dnajc24 dnajc24 other downstream 1249827 23938925 ~ 24020314 (-)
LOC103033401 spon1b,LOC108413171,LOC107701107,LOC108269023,LOC107745929,LOC107686649 other downstream 1857187 23220469 ~ 23412954 (-)
G207903 NA other upstream 39242 25317002 ~ 25352674 (-)
G207940 NA other upstream 314871 25592631 ~ 25733304 (-)
LOC111195756 NA other upstream 641460 25919220 ~ 25938032 (-)
LOC111195825 NA other upstream 711678 25989438 ~ 25992494 (-)
LOC111195762 NA other upstream 802004 26079764 ~ 26086504 (-)

Expression


Co-expression Network