LOC107197240 (LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886)


Basic Information

Item Value
gene id LOC107197240
gene name LOC107197240,LOC108270618,LOC107581863,LOC107714027,LOC107654092,LOC107102881,LOC102226886
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 29019220 ~ 29020927 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603523.2
CATCAAGAATGGATCTATCCTCCTCTTTTCTCAGCTACAGCACACAAAGCTGGAGTTCTCCCAGCTCTGACTctgatatttacaatatttcctCTCCAGAAGCTGCGTCGCCATCAAACTACTCAGACTTTTCACCAGGGAGCAGGTCTCAGGACACCCCAGCCACACTAAGGTCAGCTATTCCCCGGTGTGTCGAATCAAGAATGTCAGTCGGAAAGCAGAGGACGAGGACACGCTCTAAAAACCCAAGCAAGCAGAGACAGAACGCCAGTGAGAAAGAAAAACTAAGGATGAGGGACCTGACCAAAGCCCTCCATCACCTCAGGACCTACCTGCCTCCATCTGTAGCTCCAGCTGGACAAACCTTGACCAAGATCGAGACGCTGCGCCTCACCATCCGTTACATCTCCTACCTGTCCTCGCAGCTGGGCCAGGAGCCCCTCTCTCAGAGGAGTGACCTGAGTCCCCCTTACAGTGGGATCTGCCATTACAGCTCCGTTCCTGAAGCCTGGAGACCAGCAAGCGgggcagaaacacacacacaggacattGGACACCTTGGTCACACCAGTGTAACAACAGCTGAACCTCAGAATGAGATGGACGTGGACATTTTCAGCTCCATGCTGGAGTACCCGCTGTATCCGGAAACATCATTTTCATGCCAGgACTACAGTAAAGCTGCACACTACCAGAGCCTGGCCCCGGCCTTCTGGAGCTGAAACTCATTCGTCATTTTTTAGACTGTGTACAGTATTTAATATATCCTAATTTAATGTTTCACTGTaagattttaatattgtaatactatattttttacctgtttttgtaca

Function

NR:

description
mesoderm posterior protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603523.2 True 833 mRNA 0.49 3 29019220 29020927

Neighbor

gene id symbol gene type direction distance location
LOC103034116 NA coding downstream 130335 28871840 ~ 28888885 (-)
LOC111195773 NA coding downstream 276627 28735186 ~ 28742593 (-)
gal galn,gal,LOC108443068,LOC108268663 coding downstream 317645 28694166 ~ 28701575 (-)
LOC103041235 NA coding downstream 335718 28668730 ~ 28683502 (-)
LOC103040620 LOC108443074 coding downstream 397122 28602890 ~ 28622098 (-)
LOC103039163 sv2bb,LOC108444497,LOC107654137,LOC107583122,LOC107714041,LOC107720517 coding upstream 23048 29043975 ~ 29157568 (-)
LOC103042757 klhl25,LOC106560960,LOC107581825,LOC107714043 coding upstream 413552 29434479 ~ 29471880 (-)
LOC103023888 ntrk3a,LOC105018511,LOC108269325,LOC108438531 coding upstream 1040221 30061148 ~ 30110040 (-)
LOC103038627 LOC108424200,LOC107694978,LOC107680612,LOC108269149 coding upstream 1147174 30168101 ~ 30195378 (-)
LOC103021866 LOC108424141,LOC107550873,LOC108269199,LOC107694980,LOC107756464,LOC107741111 coding upstream 1342366 30363293 ~ 30390245 (-)
G208899 NA non-coding downstream 81771 28934834 ~ 28937449 (-)
G208865 ap3s2,LOC107654134,LOC102235539 non-coding downstream 95890 28914160 ~ 28923330 (-)
G208861 NA non-coding downstream 133678 28879984 ~ 28885542 (-)
G208849 NA non-coding downstream 224786 28792124 ~ 28794434 (-)
G208843 NA non-coding downstream 250190 28765683 ~ 28769030 (-)
G208921 NA non-coding upstream 42572 29063499 ~ 29068424 (-)
G208939 NA non-coding upstream 149752 29170679 ~ 29170900 (-)
G208976 NA non-coding upstream 327883 29348810 ~ 29353755 (-)
G208977 NA non-coding upstream 335204 29356131 ~ 29359313 (-)
G209058 NA non-coding upstream 501158 29522085 ~ 29984304 (-)
lrp5 lrp5,LOC107654131,LOC107714037,LOC107581849,LOC107701817,LOC106573620 other downstream 158446 28783083 ~ 28860774 (-)
LOC107197304 NA other downstream 323520 28662183 ~ 28695700 (-)
wwp2 wwp2,LOC108439047,LOC107740243,LOC107560080 other downstream 750851 28216395 ~ 28268369 (-)
G208394 borcs5,LOC107753635 other downstream 2363036 26655443 ~ 26656184 (-)
G208046 NA other downstream 2806379 26212058 ~ 26212841 (-)
G209090 NA other upstream 1003034 30023961 ~ 30024550 (-)
G209127 NA other upstream 1141530 30162457 ~ 30162973 (-)
LOC103038932 ldb2a,LOC108424199,LOC107756465,LOC107694979,LOC107680613,LOC107550874,LOC107741120 other upstream 1180604 30201531 ~ 30318216 (-)
fstl5 fstl5,LOC107550871 other upstream 1492980 30513907 ~ 30803356 (-)
G209224 NA other upstream 2077917 31098844 ~ 31099861 (-)

Expression


Co-expression Network