LOC103022995


Basic Information

Item Value
gene id LOC103022995
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 41627823 ~ 41633902 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606777.2
GGaaaccttattttaaaatgcaaatcACGTCATTAACTTTACTTGGCTTGGAAGCAAATGGGATGACCCATCACACTGTGGGAACCTGTATTATGTCAGACAAATCCATATTCCATattacacactttttaaaaatagaagtCAAAATGACCATACCTGTTATCAGCAGGAAGTCCAAATACCAGTAGTTTGAGTTTTgtataatatagattttttaagcTAATAATAAGGGTAACTGGTTAGATGTGTGACGTATGGATGATGTGAAAAAGTAACAAATGGTTCCACCTTGGGGAAAATTTCAACCTCTCACTAAATGGCAGAAGCTAGTTTGGGGGTCTGTGTCACTGCTAACGTTTATGTGTGACGTGTTTGTAAgttatatttacagcattcCCCCTGAGCCTTAGCTGCATAGTTTGGAGCTCTATTAATAGTGCTGGCTTCTTGCTACAATGTCAAACGTAACTTGATTCGGTCTGCTAAGTCACACAGTGTTGTGTGTCAGCTGTTGGCCACCTCCggttctctctcactctgcctgATGGAGCCCGCAGTGGAAGAAGTGTGGAGCTCCGGCCGAGACGGGTCCAATCTTCTGGGTCTGCCGGGGCCTTGCCCCTGGGATGACGATGACGAGCCCCTAGGTCTGGGGGGCATCAAACCCAAATCCTCTCCCATCCCAAGACGCCGGAGCTCAGAGTTTTCATGCTCTGATGATGAATCGCAGCCTCCGCCATCCAGCAGCCGCAGGGTATCTTTTGCAGATGCCTTTGGCCTGAGTCTGGTCTCAGTCAAGAAGTTTGATTCCTGGGGTGTGTGTGGCCCCTCAGATCCACTGGAGGGGGATCTCAATGAGGTGAAAGAGTATTTCCTGTCCCAGCTCTTCACCCCTCCATCTACGCAACAAGAACTGATCCAGAAGGTTCAGGAGAATAAGCTGGAGCTGGAGAGTCTGGAGCTTCTTCCTGGCACCACCACACTCAAAGGCATCATTCGTGTGCTCAATCTGAGTTTTGAAAAGATGGTCTACATCCGCACCTCTTTGGACTGTTGGAGCAGTCATTTTGATTTGCTGGCAGAGTATATTCCTGGGTTGAGTGGTGGTGATACGgactgcttttccttcaggcTCACGCTGGTCCCTCCATTTGGGGAACAAGGAGCCAGGGTGGATTTCTGCCTTCGATATGAAACACCTTGTGGAACTTTCTGGTCCAACAACAAAGGCCAGAACTATGTTTTGTTTTGCCATGAAAGGAGACAAGAACAAGGTCAGAATGAGAAgaaacacactaagaaaagcTGTCTGAAGTCAACCAGCCATGACTGTTCCTCTGAGTCCAGTTCTACCTCGAACACAGAGGAAATTCCAGAAATAATCCTAAACTGTGGGATGGCAGCTCTTGCTGAACCTGTCGAAGAGGACAAAATACAAGAGGAAAGCAGTAAGCTGCAGGAGGAAACCATTCGTAACCGCAGTAAGAGAAGCAGGAGAAAAGCTGCACGACTGGCAAAAGTGAAACAATACTTTgctgaaagagaggaaaaggacATCCAGCAGTTTGATAAAGACTCCATTGAAGCAGCTGTAAAGGTGAATGTGGAAAATCCTGTTCCAGAAGAAGTGGAGGCACCTTTAAACCTTTCAACACCTCAAACAGATGCATTGACAGAGATGCAGGACAGTGTCTCGCTTTCACCTGCTGAGGAAATTAAGATGCAAAAATGTACCTCAACTTCTGTGGATACTGATAGCAAACAAGTTCCTCCTGCCAATATTCAAACACAGGACAAGGAAAATATTCCAGCAAGCCACTGTGAACTAACAACTTGCATATCTCAGGCAGTGCTGTCCCCTGTGGATTCTGTAAACTCTAATAAATCAGCGGTGAGCTCTGTCAGCTCTGTCTCGCAAGCACTGGAAAACAGCCAAAACAAAGAGACACTTACAGGGCAGACAGCTTCGGTCTCACAGCAACCTCTTGAGTGCCAGACCTATGAAACATCtattaacaaaaatgttgaaaaagcATGGGAATGCTTCGAAAAAGGTGCTATGGGAAGAATGGGGAGCACAATGGACATAAGAATGGGTGAGGACACAACCAGCAGTGAAGATgacataaaacacaaagacatcTTAGAAAATAAGCCAGACATTCAACCATCTGGCCATAACTTCACTTTTGAGACAATAGTGGCTCCTCTTTACCACCAAGTTTTTGAGAGGATGGAAAGTGAGAGAAGAgactttataaacacaaaattcaATGCTGGAAGGTCAGCTAGAAAATGGGAAGATGAATGTCTGAGAACAGTCACGTACCAGAGTTATCCCAGGACACAAAGCCCTGAAACAAGGCCAAATTCATGCATCTCGAAAAAACATGATCTTAATGATGGGTATTATGGGACCTGCAGAGATCTCTGTCCAACTGATTTATTTAACACAAAGAACACCACAAAGGAACCACCATCTGGCACCAATGTAAACAGAGAACTTGCAAAAATGGAGACCCCCTTTCATGATCTCTCGGTAACGGACAAAATGGAGCCCCCAGTGAATAGTAATGTCCCAGAACCGAAAATGTccacacaaaaacaacagttaTCAAACAGCCTGCCATTACAACTAGAATGTTTGAACTTGACATCCTTGAGTTCTCTGGCAGAGTGCATACCTaatcaaaaagaagaagaacaaaatCAGGAAAGAATAAATGTACACAGTGAATGCTGTTTGCCTGATAGCACTTTAGAAGATCCATCACAGAACGCAAGCTTTCAGAGCAAATGTCCTCCAGAAGATCCACAGCAAGAGGATATATCTGTAGATTACATGGTTTTAACCACACAGCCTGACTTATACAGAGCAAATGTCAAGACATCACCCACAGACAGCTCAGCCACCCACATATCCTTTGAAACTGGGCTTAGCACGGAGCTCACCAAGATACAAGGCATAGAGGCCAAATCACTGCAATGCCAATGTTCAGAGGGGACACAAACACCCATGGAATCTACTTTTAATGAAATACTGCCTAGCAGCAAGTGTCTGGAAGAAAGCCACAGACTCATTCCAGACTCTTCTTCATTCTATACTCATATTACCTCAAACGTCATGTCTAACTTTAACCAAGATGAAGCTTCAGAACCGTCTCAGAATCTGACTTCACTGACCCCCATACAAATGCCAGACTTCACTTCATTCGAGGAAAGCCAAAAAGCAGCTGGCACTAGACCCGTCCAGTGTAAGGTCACAGATCTTACACAGGGTATAGAAAACATAAGTGAAATTATTGATGGTATTTCCTGTCATGTTGGCAAGGACACTAAAACAAACAGtgatagaaataaagaaacagatGATTTAGAAAGAACACATATAATCCTACAAGACAATACTCTGGACAGGACTTTATTACACCCTCTACCCTCCGGTAAAGAACTGTCAAGCGTTTCTAAAAGTGTACTACAAGAAAAAGAGGCTGATATCTTTAATGAACACAAACATGTAGAGTATATTGATGAGAAAAAGGACCTGAAATCAACAGACAAGGAAGAATACCAAACAATGCAAGTTTCAGAGGAAGCAAAAGAGTTAGACAAGCTGAAATTACAGCCACAAGAAGTAGTAGAAGAAccaatacaaaaagaaaataaagaacaaaaaacagaagaaagtgAACATGAACAACAGGATGTAcctaaagaagaagagaaacaaTTCCTAAACCTAAAACATGAAGGAAAAGAGGAACAAAAGCAAGAAGAACAGAAAGAACAAACACATGAATATAAACAACAAGAAGAATATGAAGAACAGAACCTAGAAGAACAAGAAGATAAAGGAGAACAGAAAGAGCAAGATAAGGAGGAAGAACTAGAAGAAGGTGAGGAAGAACTAGAACAAGAACAGCAAATTGATGAAAAGGAAGAACTAGAAGAATGGGAGGAGGAACTAGAACAACAACAAAGTGATGAAGAGGAAGAACTagaagaacaacaacaaagtgataaagaagaagaactagaagaacaacaacaaattGAAGAAAAGGAAGAATTGGTGAATAATGATACTTTTGAAGATGAATTACTCTAcatagatgatgatgatgaggaagaTGCAGAAAAGGAAACAATATTAAAAGATTCACAACAGTATTTTGAAGAATGGGAAAGAGAAGAAGATCTTCATTCTCTTATAGTAGAGGTGGAGGAGCAGGACATCATCTGCAGAGTGAGCACTGTAGGTACTTTAGAAAACACAACTAGAGCAGATTCCATAAAGGAGGTACACCCACAGATCAGACAGGAGCTGCAAAAGGAAGAGCAAACTGTTAGTGGAGAAAAAGGGATCCAGTGGGATACAGATTCTTCAAAGCATGCTCTGACAGGAAATCATGATACAACATTTAGTGACACAGTAATGCTCAtcaacaaagaagaagaagtgtgctttcaaacaaatgaacaacaaGTTACAAAGGATGCTGCTGCGGAGGTCAACAAACTGCAGGAGAACTTGAAGGGCGTACGTAATCAGAGTGAGAAGAATGTGGGTGAGGATACATCCACAGAATCTATATCTGATGAAGAAATGGACCTGTATCTTCATCAACTAAAGATCAGCCAAAAGCCAGGAGTAAAAGACACAGTTTCCAGTGGGAACTACTGCAGGAGGTCATCTCTGAGGACAATGCATTCACGTATGCCTTCCATCTCAGAATCTGTGGATGAGGACCAGCCAAATGCCTCACTGGAAGATCTGACAAATGAGGAGATGACAGAACTAGAGAAGGCCACATTGCCTTTAGTTGATGAAGAGGAAGAGATGCTTCGGCGCAATGTACTCTGGTGGAGAGAGTTCTTTTCCTCTGATAACATGTCAAAAATGATCGGGTGCACTTTCTTgttagttgtttttttagttacGGCTTATTACTATGACTTTGTTGCATGTTTTGGGCTCTATTTGCTTGCCTTGTATTGGCTTTACTTTCGAGGTGAATCAGAACCTTTCAAAATCACACAACCTAATAGATAAGTATAATACAAAA

Function

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606777.2 True 5066 mRNA 0.42 4 41627823 41633902

Neighbor

gene id symbol gene type direction distance location
bmt2 bmt2,zgc:153606,LOC107716726,LOC107696259,LOC107753593 coding downstream 2623 41616553 ~ 41625200 (-)
tmem168 tmem168 coding downstream 12632 41608077 ~ 41615191 (-)
LOC111195800 NA coding downstream 21625 41601106 ~ 41606198 (-)
dock4 dock4,si:dkey-81e3.1,LOC108268692,LOC107554957,LOC107661459 coding downstream 49309 41473353 ~ 41578514 (-)
immp2l immp2l,LOC107716721,LOC107574088,LOC107696251,LOC107753590,LOC106573249 coding downstream 155874 41324957 ~ 41471949 (-)
LOC103043124 LOC108420127 coding upstream 3433 41637335 ~ 41652545 (-)
LOC103042404 cacna2d4,LOC108268693,LOC107574657,LOC107679611 coding upstream 19797 41653699 ~ 41694976 (-)
LOC103043640 samm50,LOC108420373,LOC108269286,LOC107679603,LOC107716646,LOC107590834 coding upstream 61587 41695489 ~ 41702386 (-)
LOC103035000 pdlim3,pdlim3b,LOC108268957,LOC107600156,LOC107658037,LOC107670171,LOC107751927 coding upstream 248734 41882636 ~ 41905179 (-)
LOC103035325 NA coding upstream 278427 41912329 ~ 42005800 (-)
G211242 NA non-coding downstream 716187 40890814 ~ 40911636 (-)
G211141 LOC108419529,LOC108269134 non-coding downstream 901639 40718320 ~ 40726184 (-)
G211140 LOC108419529,LOC108269134,LOC108431712,LOC105892636,LOC107554941 non-coding downstream 909621 40715530 ~ 40718202 (-)
G211119 NA non-coding downstream 910710 40629372 ~ 40717113 (-)
G211450 NA non-coding upstream 219896 41853798 ~ 41865986 (-)
G211449 NA non-coding upstream 232858 41866760 ~ 41872555 (-)
G211517 NA non-coding upstream 446818 42080720 ~ 42080968 (-)
G211528 NA non-coding upstream 548474 42182376 ~ 42182687 (-)
G211532 NA non-coding upstream 559412 42193314 ~ 42195273 (-)
LOC103022682 NA other downstream 27200 41593331 ~ 41600623 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other downstream 317072 41306946 ~ 41310751 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other downstream 408380 41159230 ~ 41219443 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other downstream 1057675 40558684 ~ 40570148 (-)
G210995 NA other downstream 1249470 40372805 ~ 40378353 (-)
G211539 NA other upstream 571234 42205136 ~ 42205636 (-)
LOC103029763 NA other upstream 647855 42281757 ~ 42361599 (-)
G211691 mrpl11 other upstream 1129299 42763201 ~ 42847764 (-)
G211912 cfl1,LOC107658066,LOC107601108,LOC107661397,LOC107560979 other upstream 1369503 43003405 ~ 43025465 (-)
LOC103021577 ubl3b,LOC108432919,LOC107658069,LOC108231135,LOC107707244,LOC106515624,LOC107092570,LOC105912149,LOC101472018 other upstream 1455120 43089022 ~ 43107011 (-)

Expression


Co-expression Network