LOC103027945


Basic Information

Item Value
gene id LOC103027945
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40584365 ~ 40590468 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606785.2
TTCCTGTCTACCATGAGAAAAGCTTTCTTAAACTAAAGCCACATCCTCATGCACGTCTCATTCTACGCATGCTGGATTAAGTGCAGTCTTACTGGAGTGCTGGGAAAggatgatttttgtgtttttgttgattttactgGTGGCAGGAAGGGTTTCTCCTCTGGGTTTGATAGAGCAGCCTCCAGTGCTGTGCTACCAGGAGGGAGTACCATGTAATTTTACATTCtGTGGGCAGAACTGTTCAGATAAAGGGTGGGTGAAGCCGAGGAAGGTCAGCCCGGGGTTACCCGGGGTGAAGGTGTCATCCAGGGCAGATCAGAGTGCAGAAAAAATTCCTGTCCTAATTCTCACATTCACTCTGCCTACTGATGGAAGCATTTACACGCTGCAGGGGACTGAGGTGCATGTGCTTGAAGTTGCCACCAACAGCAGTCTGTGTGTTCGCTACATCTTTAATGGGAAATTTAAAACGGTTGCAACACCGGATAAGAAGCCATGGTCATTTACTCTAGACCGCATCATGGTCCAACCAGGGTTGAAATATCAAGTTTCTGTGTCTAATTTGCCAAAGCCAGATGTGGGAAGACATGCAGAAGTGCGGCATATCACAGTTGCGGgTTGTAAAGATCCTACAATGGGAAGACTTAAAGTATGCTTGGAGAACGGAAGCCTCTGGGACCCCAACCTCACCTGGTCAGTTTCAGACAATAACTTTAATGGAAAGGAGATTGCAGTGACCTTTAATACAGGACAGTTCTCTGAGCGATACAGAGTGGGCCTTCACCTTCCTAAATTTCACCCTGACCACATGGTTTTAAAGGACAATCGTACTTCAATCAATGTGACTTTTCATTTGGACGCTATGCAGATAAAGCACTGTGAATTTGTTGTTGTGATTAAACCATTCTTTGTCAGGTGCATGAATAACTGTTTAGAATACCAGCAGAAGGTTCAAATCTGCTCAGGCTCTACCAACAACATATATTACATGCTTTGGACTGTTTTTGGCTTGGTGGGACTGATATTATGTGCCTACAAGGCTCATAAGGAGTTTCACAGCAACTCAAAAGACGATTCATATATGTCTTCTAATGACACCACTGACATGGAAGAGGAGAAAATCCATTCTATACAAAGGCCAAGTAAAGTCCTTATTATCTACTCTCTGGACCATCTTTTGTACAAAGAGATTGTCCTCAAGCTGTGTGCCTTCCTAAGGGCAAGGTGCGGCACTGACGTCATGCTGGACCTGCTGGACTTCACCCAGTTGAGTACTATAGGCAGCATCCAGTGGCTGGAGATGCAGAGGGACAGAATGTCGGGGTCTTCAGATAAAGTACTGATATTATGTTCTCCAGGTGTGTACGCCAAATGGAGGGCTATGTGTGGTGGTAACAAGGTGATGACCAGGGAGGACATCCAGTCGCCTATGGGAGATATGCTCACTCCAGCCTTAAGCCTCATCATACCGGACTTTGTGCATGCTTCGTCTTATCAAAAGTACATTGTGGCTTACTTTGATGATATCTGCAGTGAGACGGATATACCTGCTCCGTTAAACGTGGCAGTGAAGTACCAGCTCATGAAGCACTTTGAGGAGCTCTTCTTCAGGCTAGTCGACAAAGAGAAGCATGAGCCTGGAAGTATTAAACAGGTCGAAGGCATTGGAGGAGATGATTACTTCAACTCACTGCAAGGAATAGCCTTAAAAAATGCCATTGAGGCATTCCAAGCTTACCAGCTAGCAAACCCCAACTGGTTTGAAATGGAGCTTGTAGACACAGACGTAGAAATTGAGCCACGTGGACATAAACCGGATGAAAGTGCAGATGTTGCCTGTAACTGTGTTCTTCAGAACCAGCTATGGGTCATGGATGGTATAGATCCTGTACTTATCAACAATCTTGAAGGTCAGACAGATAAATGGGAAAATGGACTCACAGAAATTACAAACTTTTTTGACGAAGGGTATTATGCCTCCTGTGTTGAATTTAAACCCTGTAACAAAGCtctgcaacaagacaatgatcccaAGGGCAAAGCTTTGTTAAAGAACAAGGCATGGACATTTCTGGAGTTGCCTTCTCAGTCTCAAGCTGTAAATCCCACTCGGATTTAAAGAAAGCCATCACAGCACAGAAGGTTGTTCGGACTAACTGACAATTTAGAGAAAATCAAGGCAAAGGTATTCTCCAACAATTGAGGGTAAATTTAACTAATGTGCAAATTCACATTTATCAATGTATCAACTGAACTCaaacatttgaattatttaataaataatgtttatttgttta

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606785.2 True 2297 mRNA 0.43 11 40584365 40590468

Neighbor

gene id symbol gene type direction distance location
LOC103028575 LOC108419324,LOC108269048,LOC107693229 coding downstream 1412 40570582 ~ 40582953 (-)
LOC103045095 LOC103045095,LOC107590823,LOC107753557,LOC108268426,LOC106608917,LOC101062121 coding downstream 229089 40327839 ~ 40355276 (-)
gtse1 NA coding downstream 258925 40318789 ~ 40325440 (-)
actr6 actr6,arp6 coding downstream 266553 40312884 ~ 40317812 (-)
LOC103043462 sycp3,LOC103043462,LOC107666284,LOC107590858,LOC108269409 coding downstream 271624 40308494 ~ 40312741 (-)
dnm1l dnm1l,LOC107716704 coding upstream 97324 40687792 ~ 40704331 (-)
dnajb9 dnajb9,dnajb9a,LOC108419513,LOC107576388,LOC107716654,LOC107678282 coding upstream 114661 40705129 ~ 40710254 (-)
LOC103032053 kctd15a,LOC103032053,LOC108419575,LOC108269135,LOC107678290,LOC107554942,LOC107661476,LOC107716706 coding upstream 176585 40767053 ~ 40787591 (-)
LOC103031733 chst8,LOC108416858 coding upstream 205069 40795537 ~ 40870630 (-)
adal adal,LOC107753575 coding upstream 301063 40891531 ~ 40896561 (-)
G211058 NA non-coding downstream 17188 40566889 ~ 40567177 (-)
LOC111195793 NA non-coding downstream 31670 40551912 ~ 40552695 (-)
LOC103026547 NA non-coding downstream 32586 40550281 ~ 40551779 (-)
LOC111195848 NA non-coding downstream 34093 40544773 ~ 40550272 (-)
LOC111195797 NA non-coding downstream 40198 40534851 ~ 40544167 (-)
G211085 NA non-coding upstream 20629 40611097 ~ 40611720 (-)
G211119 NA non-coding upstream 38904 40629372 ~ 40717113 (-)
LOC111195798 NA non-coding upstream 61197 40651665 ~ 40652046 (-)
G211140 LOC108419529,LOC108269134,LOC108431712,LOC105892636,LOC107554941 non-coding upstream 125062 40715530 ~ 40718202 (-)
G211141 LOC108419529,LOC108269134 non-coding upstream 127852 40718320 ~ 40726184 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other downstream 14217 40558684 ~ 40570148 (-)
G210995 NA other downstream 206012 40372805 ~ 40378353 (-)
G210991 LOC103042126,LOC108416825 other downstream 221128 40361258 ~ 40363237 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 644310 39933116 ~ 39940055 (-)
atp8a1 atp8a1 other downstream 788422 39643544 ~ 39795943 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 568762 41159230 ~ 41219443 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other upstream 716478 41306946 ~ 41310751 (-)
LOC103022682 NA other upstream 1002863 41593331 ~ 41600623 (-)
G211539 NA other upstream 1614668 42205136 ~ 42205636 (-)
LOC103029763 NA other upstream 1691289 42281757 ~ 42361599 (-)

Expression


Co-expression Network