G50855


Basic Information

Item Value
gene id G50855
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 590132 ~ 590613 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU57872
TCCGGGTATCTTTTGTTCTTTGAAACCACACTAATGGGGAAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGAGTGTATATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGACAATACTGTCAAGTAAAGCCAATTCAAACACTTGGGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAA
>TU57876
TCCGGGTATCTTTTGTTCTTTGAAACCACACTAATGGGGAAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGAGTGTATATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGACAATACTGTCAAGTAAAGCCAATTCAAACACTTGGGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGTCGAAAGTCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCANNNNN
>TU57873
AAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGAGTGTATATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGACAATACTGTCAAGTAAAGCCAATTCAAACACTTGGGAGAGCTTCACAATGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGTCGAAAGTCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCANNNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57872 False 405 lncRNA 0.40 1 590132 590536
TU57876 False 482 lncRNA 0.43 1 590132 590613
TU57873 True 443 lncRNA 0.43 1 590171 590613

Neighbor

gene id symbol gene type direction distance location
CI01000009_00547369_00551459 NA coding upstream 37916 547369 ~ 552216 (+)
CI01000009_00541592_00545933 CMSS1 coding upstream 44135 540769 ~ 545997 (+)
CI01000009_00378726_00379550 NA coding upstream 210328 378726 ~ 379804 (+)
CI01000009_00363403_00368182 RNASEH2B coding upstream 221916 363403 ~ 368216 (+)
CI01000009_00343750_00344964 TRIM13 coding upstream 244842 343750 ~ 345290 (+)
CI01000009_00603498_00605392 NA coding downstream 12615 603228 ~ 605392 (+)
CI01000009_00605366_00605964 COL8A1, COL8A1A coding downstream 14753 605366 ~ 606070 (+)
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding downstream 17900 608513 ~ 609375 (+)
CI01000009_00611583_00617762 TFG coding downstream 20692 611305 ~ 617762 (+)
CI01000009_00620687_00621072 NA coding downstream 30074 620687 ~ 621537 (+)
G50735 NA non-coding upstream 51621 538171 ~ 538511 (+)
G50719 NA non-coding upstream 85513 504418 ~ 504619 (+)
G50631 NA non-coding upstream 94171 395375 ~ 495961 (+)
G50633 NA non-coding upstream 201010 388750 ~ 389122 (+)
G50639 NA non-coding upstream 201480 388198 ~ 388652 (+)
G50881 NA non-coding downstream 33121 623734 ~ 623957 (+)
G50883 NA non-coding downstream 45861 636474 ~ 636705 (+)
G50880 NA non-coding downstream 54172 644785 ~ 645049 (+)
G50878 NA non-coding downstream 103413 694026 ~ 695215 (+)
G50902 NA non-coding downstream 106992 697605 ~ 697840 (+)
CI01000009_00094836_00095813 NA other upstream 494345 94371 ~ 97230 (+)
G50920 NA other downstream 179228 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 832234 1429873 ~ 1435328 (+)
G51122 NA other downstream 1089533 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1303622 1897343 ~ 1919516 (+)
G51274 NA other downstream 1664486 2255099 ~ 2350486 (+)

Expression


Co-expression Network