snx25 (snx25,LOC107556844)


Basic Information

Item Value
gene id snx25
gene name snx25,LOC107556844
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 8575970 ~ 8648702 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683538.1
ATCTGGGTCTCCGCCCACGAGTGGCCGCCAGCAGCAGAGTGAGAAACACAGCTGAGTGATTCACAGCGGAGTCAGGAATATGGGGGCATTTCGTGTATCAGTGATCTGTGGCTTTCGGTGGATATTTCGTGACCAGAATGCGAGGATTTGACGCCTTTCTCCGTTATTTTGGGAACTTAATCCACCCTAACTGCGTGAATGAGCGTTACAGGCTTTACAGCGGATAGAGAAACACAGGCGCCCTGATTAAACAAGTAAACCCGGCGGATTAATCCGCGGAATTACTGCGGACTTTTCCCGGTTTGGGAAATTAGTGGGATTGTTTTGAAACGGAGAGATCAGTTAACGTTATATTCGTGTAGAACTTCGCGTTAGATGGACttgcttttattatgaagctgTAGGCACTGTTTACCTGCTTAACCGCACCTTTCTTCTCCATCTGCTCCTGTCTTTTGCAGCTTTCAAGTCTatgtgaacatttttttttattattacgaTATATTGATAACTTAGAAACACTAGACACAAAATAGATACACACAGCATAtagcttagctaggttaacAATGGAGGACATccaagattaaaaagaaaaataaataactcttTTCATATAACCTATGGTAACTAAGCAAAGCTTTTTATTACTAAAACATTTAACTAAGCAACAAACCGCTCTGTTCTGTGTCTATAACTAAACTGACTCTATTAGTAAAAGAGACCACTAGTCTCATTTATCTCAGTGATCTCTGAAAAACGAGTATTCTGATATAACCTAGCTGTTAATATTCCTTTCTGGGTGGAATTAAAGGCAGCTACAGTTTCCcagattttaaataatcattgtTAGCTTAAGCTAATGCCAGCTCTTTCACTTCAGCAGTTTTTTCATGGACTTGGTGTGAAGACAgtttattagctagctagctttttgttaaaataaaaaggatGGGACGCTGTAAGTAACCTGGACCAACACTAGCtccattaattaattagttatatAGTTGGCTAATTAAATAATTGCTGAGAAATGTGTAGATGGCTCGCTAGTTGACTTGATTCCCTTCGTGCACTTGCTCCTTATTTATTCATCCTCTCGATTTAGCGGCTCCAGCTCAGTAGCAGAGCGTTTTATAGAGAGTCTGAACACTTGTTGTTACTGCAATTAACGTTACTGATAAACGCTAGAGAGAGCCAGCGAGGGAGACCTCAATGAATTGGCGTAAATGGAGCCAATAGGCTAAaacttacaataaaaataggCTCCAACTGATTGTACCGGATATTCCTTTAATTATAAAAAGGaggataaaatattttgtttttaaaaaagtaaagaaaacgaatgtgtatgttttcattttcgtacagaaaacatgttttagaCAAGTAGCATTAAGTAGCATTATTGCTACTTCGAGCTGACTGTTGAAATGCGTATAACTcaagtttaaaagctttaaaaagtaTGTCTTCGGGACTGAAACATTCcatattgtcatattttttcagtatggaAATGaccaaacattaataaactatgaTTTTACTCAGTTGCTCCATttaaacccattcattttgggcTCACTGTGGAGCGCTCCCTGGTGGTCAAACACAGCGGAAACGGTTTTTAAGTGGGTGTTCTCCTCTCTAGAGACTCTCAGTAAGTAGGTTGCTATGCAGCAGCCTAGCTAGGAGCTGGCGACTTAACGTTATTATCATCACTTGATGTAGCTAGGTGTACCATAGACATGTATTactgtagttagctagctagctaactaactagcctAGCCGTGAAGACtctgatttatttatgttacgttagcttagctagcaagctaataTAACCTAAATAGCGTTATCTGTTTTGGTTAGGATACGCGCCAGTTAGCTATTAGCTAGAAtaaatatttagttagtttaaagAGGGAAAACGGCTTCCTTTCCCCCCACCACCGCTATGAATGTCATTTCAGACCTCGCGTAGTTAAGTAAGTTAAgtcagttagctagttagctaaactagttagctagttaactatcCTTAGCTCCGccaccaaaacaacaaacaaagtGGAGCCAAGATATGAAAAGCGGACAAACTCGAGGGGAATAAAGTGTGCCGTGTGGACATGCCCTTTCCAGCAGCATGCAGGCTGatggcagcagcagcggcagcgtCGGCGGCAGTGCCCATGCCTCCCCGCCGGGCGCCGGGTCTTCAGCCGCCTCGCCGTGCCGGGTCCTCCCGGCGCTCACGCTCGGCATCGCGGCGGCGGCGGTGCTCCTGCAGTTTGGCTGTGGGGGACTCAGCCTAGCGGCGTTTTTCCTCAAGCTGTCCATTTCTGTCTCCTTCACGCTCTTCTGTTTCCTGCTGGGCTGCTTCGGTTTACTCGCCAAGAAGAGCCCTCTTAAACTCAGCAGATTCCCCACGGCCAAGAGGCAGCAGGCGCCCAACCTGCTGGATAAACTGATGggGCGTTTTTCTGTCCCGCTGCTGGATGCAGCACAGACCAGACGAGTGGTCGTGTCTCACAATATGGATAAAGCCCTTAAAGAAGTCTTTGACTACTGCTATAGAGACTATATCTTGTCGTGGTATGCCCCGCTGAGTCGAGATGAGGGGCAGCTGTATCAGATGCTGTCTGAAGATTTCTGGGAGATGATCAAGCAGCTGAGGGTTCGTCTCTCTGAGGTGGACGTCGTGAACGTTGTCTGCAACGACACCGTCAAGACCCTACATTCCCATTTCTGTGACCTCAAGGCTGCAAACGCCAGGCAGGAGGAGACTCCGAGGCCCTTGGCGCTGCACCCGTGTCTGCGCAGTTCCGAAGAGGAGCTGCAGTTTTTGCGTTGCTGCTCACGCCTGCTTGTGCTGTGTGCGCTGCCTGCACGTGACGCTCGCTGCCGCAGCCTCCGCCTCGTCCTGGTGGAGGTCATTGCCACTAAAGTGCTAAAGCCATTGGTGGAGGTGCTAAGTGATCCTGACTACATTAACCAGATGCTTTTGGCTCTGCTGGAGCATCGCGAACAGCATAAAAAGGCGTACATCTACGCAGACTCTTACGAAGATTTCTTCAAACTAATCAGCAACAGCACTGACATTGACTTCCTCAAACAGCTCAGGTATCAGATAGTTGTGGAGATTGTTCGAGCGACGACTCTCAGCAGCATCCCACAGTTCAAGAAACAGAAAGACAGTAAAGGGAAGGATGTAGCTGCTATGAAGGCAGACTTGCTGGGAACTAGGGATATCAAGCGCTACATCAATCAGCTCACAGTGGCTAAGAAGCAGTGTGAGAAGAAGATCCGGCTGCTGGAGGGTCCTAACTACGAGCAGGAGGTTGATGGCAACCAGGATGATGGATTTGGGCCTCAGGGCCAGAAGATTCTGCAGTTTGAGGAGATCATGTCTAATGCTCTTTACCGGGAACATTTCCGCATCTACATGGAGCGAGTTGATAAAAGAGCTCTCATCAGTTTCTGGGAGCTGGTGGAGACACTAAAGACTGctaacaagAATGAGGTACCGCAGCTGGTTGGGGAGATCTATCAGGACTTTGTGGAGAGTCGAGAGATCCCTGTGGAGAAAGCTCTGTTTAAAGAGATCCAGCAGACTCTGGTTGGGAACAAGGGCACGGACGTGTTCCACAAGATCCAGAGTGATGTCTATGAAACCATGAAGGAGCGCTATTACCCATCTTTCCTAGTCAGCGACCTCTATGAGCGGCTCATGAAGAGGGAGGAGCAGAGGAGCAGCTCGCAGTCCAGCAGCGAGGACAAAGATGATGGAtgtcaaGTCTTGGAGGGGGTAGAAGTGGCTGTAGACGAAGGCAGTAAAGGCATCAATGAACAGGCCAGCTACGCCGCCAACAAACTGAGCCAGCTGTGTGAAAGACTGGAGTACAAACGCCAAGCACTCGGCATCATACAGGGTGCACCCAGAACTGACAAAAAGATTGTGACCATGCTGAAGGAGGAGATCAGGGTGATGGAGAAGGAGCACAGTGACCTTCAGCTGCATATCTCACGCACAGACTGGTGGTGTGAGAACCTGGGCACCTGGAGGGCTGTCATCAACACTGCAGAGGCTTGCGAGGAGAACGGTGAGCAGATGCCGTGTTACTGTGTTGCTGTGAGTCTGTTAGAGGGAGACGATTCTAAGAACAGCTGCTGGAGCGTCACCAGGAAGCTGAGCGAGTTCCAGGCTCTGCACAGGAAGCTGACCGAGtgttttcccTCACTGAAGAAGGTACAGCTTCCCTCTCTCAGTAAACTGCCCTTCAAATCAATTGACCAAAAATTCCTTGAGAAATCCAAAAACCAACTCAATACGTTTTTGCAGAAAATGCTGACGGATGAGCTCATGTGCCAAAGTGAGGCATTGTACGCTTTTCTCAGCCCTTCACCAGAGCACCTTAAGGTCATGGACATCCAGAAGAAATCCTCCTTCTCCTTCGCCTCGTTTCTGGGGAGACTGCCTCGCGACTTCTTCTCCCATCAGGAGGATGAAGCAGATGACGACAGTGATCTCTCTGACTATGGTGATGATGCAGATGGAAAGAAAGATGACCTCGCTGAACCCTTCTTCATGCTCATTGGAGAGGTCTTTGAACTCAGGGGCAtgtttAAGTGGGTACGGAAGACACTAATTGCACTAGTTCAAGTCACGTTTGGACGGACCATAAATAAGCAGATCAGAGACACAGTAAACTGGATCTTCAGTGAGCAGATGATGGTttactatattaatatattccGGGACACCTTCTGGCCCAATGGAAAGCTGGCACCCCACAACAAATCTCGCTCGGACAGCGAGCGTCAGGAGACCAAGGAGAGAGCCCAGCAGAAGTTGCTGGACAACATTCCAGTTGAACTGCAGAACCTCGTGGGGCAGCAGAATGCCAGGTATGGGATTATCAAGATCTTTAACGCACTTCAGGAAGCCAGTGCCAACAAGCATCTCCTTTATaTTCTTCTGGAAATGCTCCTCAAAGAGCTCTGCCCTGAGCTGAGTGGAGAAACGAAGCAGGTCTGATCACAGATACCCGGGACTGAAGGATGAGCCTCCTCGGCTTTGGTTATTTATCTTTTACTTTGGTGTTTTTTTGGaagcaatttattttatttctcgaTCTTTATCTGAAAATACTTGACTCAGTAGCACTCGTGTGAGGGGGGCTTCACGGACATCActattgcatatttttttgtcacCTCCGTCCGTTATATCTCTCGCTGGATTGTATCTACACACCAGGTCTACTGCCAACCtaccacattttatttgttttcgtttcttttttgttgtctGTGGGGTTTTTGTTAGACCTGGTAAGGTCAACAAATGTGAATAGTTGTGGAATGAgtgttgtaatttaaaaaaaagtaaagaaaagagaaaaaaatggaaaccTGGACCTCTTAAACCTCCCtacctacagtacagtacatattGTGGACATATtttgaaggattttaattgtTCAATCTGTCATGTAAAGTTATTGTGACAATTTCtttgtgatattattatagattttatttttaccaaaaataGACTTAGATCATTTATAAGCAATAAATTGCGAAAAGAA

Function

symbol description
snx25 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain and liver. Orthologous to human SNX25 (sorting nexin 25).

NR:

description
sorting nexin-25

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17887 SNX25, MDM1; sorting nexin-25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683538.1 True 5609 mRNA 0.45 19 8575970 8648702

Neighbor

gene id symbol gene type direction distance location
fnta fnta,LOC107678656,LOC107715177,LOC106604549 coding downstream 9938 8556398 ~ 8566032 (-)
LOC103028028 NA coding downstream 329020 8230091 ~ 8246950 (-)
LOC111195712 NA coding downstream 1562290 7004048 ~ 7013680 (-)
LOC111195822 NA coding downstream 2118431 6444206 ~ 6457539 (-)
LOC111188205 LOC108424126 coding downstream 2131520 6435530 ~ 6444450 (-)
enpp6 enpp6 coding upstream 3708 8652410 ~ 8667241 (-)
irf2 irf2 coding upstream 28420 8677122 ~ 8702281 (-)
LOC103025383 NA coding upstream 55256 8703958 ~ 8714319 (-)
cenpu NA coding upstream 88952 8737654 ~ 8747072 (-)
LOC103033398 LOC108431116 coding upstream 119827 8768529 ~ 8788703 (-)
G204078 NA non-coding downstream 59595 8515842 ~ 8516375 (-)
G204066 NA non-coding downstream 148420 8425387 ~ 8427550 (-)
G204032 NA non-coding downstream 365151 8210100 ~ 8210819 (-)
G204029 NA non-coding downstream 418199 8156629 ~ 8157771 (-)
G204022 NA non-coding downstream 509532 8066151 ~ 8066438 (-)
G204178 NA non-coding upstream 146599 8795301 ~ 8825391 (-)
G204217 NA non-coding upstream 370204 9018906 ~ 9049811 (-)
G204219 NA non-coding upstream 411516 9060218 ~ 9067121 (-)
G204221 NA non-coding upstream 416907 9065609 ~ 9066693 (-)
G204222 NA non-coding upstream 456166 9104868 ~ 9105080 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 832398 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 1783979 6614604 ~ 6791991 (-)
jph3 jph3,LOC100148063,LOC107714052,LOC107654149,LOC107581833 other downstream 1902042 6594378 ~ 6673928 (-)
trnai-uau_43 NA other downstream 2043441 6532437 ~ 6532529 (-)
trnai-uau_42 NA other downstream 2044302 6531576 ~ 6531668 (-)
LOC103046444 LOC108431107 other upstream 1074700 9723402 ~ 9759067 (-)
G204584 NA other upstream 1995552 10644254 ~ 10644687 (-)
G204671 NA other upstream 2934498 11583200 ~ 11584074 (-)
LOC111195729 NA other upstream 5085011 13733713 ~ 13739921 (-)
G205375 NA other upstream 5095651 13744353 ~ 13777621 (-)

Expression


Co-expression Network