LOC111195721


Basic Information

Item Value
gene id LOC111195721
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13350437 ~ 13356360 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683600.1
TCCGCAGCGCTGCAGAGAATCACAAACAAACCCGTCTCTGAGCATCCAGACTCTCCTTTCTCCACTGCTTTAAACCTTTCTACAGCTAATAATGACGCTCTGGAGACCAAATCAAACCCACACGGCTCTGGGAAAATGATGCACAGATTTTCTCCTCTGCTTGGCAGCAGTGGTGTTCAGGAATCTGAGGATGAAGCCCTACAAACTGCAACCCCTCCAGAGAAGAAGAGGAACCCCAAACAACAAGCAAAACATAGTCAAGATCAAGATCAAAACATCACAACAAATCAACAGAGAAGAAGAAGTTGGGTTGAACAGGCAAAAAGGCCACAAACAAGTCCACATCAGCACACTGGGAGTGTTAAAGAGAAGGACAAGCCTAAAAGAGGACATGTGCCTAAGCAACTGGAGACTCATAGGTTCGTCAGCCCATCTGTAAGTGACTCTGAACCACAAAGTGGCATTTCAAAAGCCACTCAAAAGACAAGAGGTCGACCAAAAAAAATAAGGCAAGCATTGGATATATCAAAGGGATCAGGCAAGGAATTTAAAACAGGTgccactaaaaaaataaatacaagaaaaagacagaatgaTAAACATATACAGACACAGACTGCTTCTGACCTTGAAAATGAGGGGGTTCCTGCCAAGAGGGCAAAGAAACCAAAGGGACCAACCTCTCaattttcaaaaagtgctacaaGCCCAAAGCATAGTTTGTCGGACTTAGAAGACTCAACAGGGCAACAGAACTTTGAAAGCAGTTCTCCTGATTTGGAAGACGACAGATCAAGGGGTAGTAGCAAATCGGAGCATTGGGATGAACTTGTTAAGGATAACAATGTAGATTTATCTAAAACGTTCAAACAGAGCAGAATAAGCAAGCACATTCCAAAGGACTCGTCCAGTTCTTCTGAGCTAGGTAGTAATAAAAAGCCACCAGTTAAACGGCTCATTAAAAGAAAGCCCAAATTGGAACATGTTTCTCAGGACTCCAAGAAAAGTGAGAAAGGAGAGGGGATGCGCAGTAAAACAGGTCCGATTGAGTGCAAAGTGTGCAGCCGGTTAATTAGATGCAAGGCTGTAATGGAGagacacatgctcacacacactggTGAAAAACCGTTTGAATGCTACGACTGCGGCAGACgctacaccagcagctccaacCTGCGCATCCACCAGCGGAGCCACACCGGCAAGATGGACTACTCCTGTGAGCAGTGCGGCCAGAAGTTCACACACCTGTCCTACCTGAAGCGGCACCTTCTTAGACACTCAGACAAAAGGCAGCACATGTGCGACCAGTGTGGCAAAGGCTTCTTTCAGAAGTACCACCTAGAGCGTCACCTTCTGGTGCATTCGGGCAAAATGCCCTACGCTTGTGACAAATGTGATGCCACTTTCAACCGCACGGATTACCTGAGCCTGCACATGCGCAACGTGCATCTGAGCGaggatggggagagagagatgaaggccAAGCCTAACAAGCCTTTCAAGTGTGACATTTGCGAAAAAGCCTTTTCCACAGGTACCTCCCTAAAGTCGCACTGGCGTGTTCACACAGGGGTCACTCCGTATACTTGCGCCATCTGCCAGCGCAAATTCAAGCAGTGGAGTCAGATGAATGCACACGTGCGCACCCATTCGGGTGAGAAGCCCCACACCTGTGACGTGTGTGGAATAAAGTTCTCACGCAAGAACTATGTTCGGATccacaaagaaaagaaacatttaGCAAATAATGTTTTCCAGcagagttaattttttttttatttaccagtagattttgtatatttttattataatttttcacATAAAATGCTAACAAGCTTTAGCTTTTGTTGTTAAAAGTGATATAATTTGGACATtggaagttatccaaaaagatTATGTcaagttttaaaattattatttttttggtcaaaaatttctTACAGTAACaactttaatacatttatctTTAATGCTTACAGGCTCTGCATATCTTACTTCAGAGGGAGTTGAAATTTTTATGATTAGTTCCACAGTACAGAGATAGAAAGCTGGAATCAGCTGGAACTGCTACgaataattaaattgttttcaAGGGGTTGAAATAAGGTGTAGTGCTTTAGAGAAGCTTGCcaaattagaaatatatattaaagctgGGGTAGGTGATTTTGTATTGGGGCATATCTGagtgtcttttttttgtgaaccTAGAtcagttaggtaggtaggttgatCGATAAGTGGGccaattattcatttatatattgatCTGGCATTTTCCTCCAGTGCAATTTTTTGCAATCCTATGGCCTCCATGGATAGcgattcatttttgttttattatgtattaattaCCATAGTATGTTGGAGTGtagaaatacacattttttttttttatagatcaCCTACTCCAGCTTTAAATATAAAGCTTCAGCTTCAGTGTACCAGGTTCACTGGTCGGTTTGtatcacaaacacaaataatatTTCTCAATTTTAAATGTCAATCAATAATGCCAGTTCTTAAGTAACCTTGTTCACATGGTCTTACAGTGTAACCCATCTGCAGAAATATTTTATGTATCCCATAATAGAAGTTTGGTTGGCTTTAGTGAGGTGAGTTTAAACAGGGTTCATTCAAATTACTACCATTagtaaaacccaatgtgaactCAGGTCAACAGTAGTGCAAGCCCTAGGAGTGGCTGAAATGTAAAAATCGCTGTGTACTTCAGGCAGGAAGGTATCCAGTCACAAATATATCAAAGTTAAGAAAGCTTACCCAGCATTTCTCAGTCCTGGTCCTGGCATCTGGCACCCACCTGATCTTTCTTCCTTTAggtattactgtttttacagacCCCTGCAACTCTGAAGCGATTGGTTTATTAACTTAGTTGAATCAGGTTTGCTGCGAGAGGGAACTGCAATAAATATCCAGGACAGAGGGCACCAGGACCAggactgagaaacactgatctaatatAGAGCCTACTTCCACCTTTATATCAGACAATAACTGCAAaccactagagggagcccgcgaacCCAAAATGAAGGTGAATGTAGTTAATCTGCTAAAAACTCAAATATAGTAACTAACCACTTGGCCAGAATGTGcttttagataaataaaaaaatgtagtagaataaagtattttgtcaaaaaagcaaagaaaacgtA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683600.1 True 3186 mRNA 0.41 2 13350437 13356360

Neighbor

gene id symbol gene type direction distance location
LOC103034080 NA coding downstream 3032 13341821 ~ 13347405 (-)
LOC103037424 smtnl1,LOC108269100,LOC107730587,LOC107661060,LOC107572821 coding downstream 41114 13304416 ~ 13309323 (-)
phox2b phox2bb,phox2b,LOC107688610,LOC107730591,LOC107591903,LOC107661069,LOC107749715 coding downstream 87941 13259303 ~ 13262496 (-)
LOC103033266 NA coding downstream 449041 12893678 ~ 12901396 (-)
sqstm1 sqstm1 coding downstream 821858 12522775 ~ 12528579 (-)
LOC103037758 jakmip1,LOC108438378,LOC108268433 coding upstream 26452 13382812 ~ 13438173 (-)
fgfrl1 fgfrl1,LOC107730574 coding upstream 180129 13536489 ~ 13547597 (-)
LOC103037875 NA coding upstream 370305 13726665 ~ 13733660 (-)
atoh8 atoh8,LOC107746166,LOC107688589,LOC107591885 coding upstream 395053 13751413 ~ 13764223 (-)
LOC103037229 NA coding upstream 409156 13765516 ~ 13767091 (-)
LOC111195723 NA non-coding downstream 28316 13320312 ~ 13322121 (-)
LOC111195727 NA non-coding downstream 51663 13287852 ~ 13298774 (-)
LOC111195722 NA non-coding downstream 317309 13024268 ~ 13033128 (-)
LOC111195725 NA non-coding downstream 337437 13006746 ~ 13013000 (-)
G204952 NA non-coding downstream 343730 13006478 ~ 13006707 (-)
G205327 NA non-coding upstream 224884 13581244 ~ 13683903 (-)
G205332 NA non-coding upstream 238835 13595195 ~ 13598025 (-)
G205343 NA non-coding upstream 278364 13634724 ~ 13650827 (-)
G205345 NA non-coding upstream 282214 13638574 ~ 13643510 (-)
G205361 hdac3,LOC103471067 non-coding upstream 329041 13685401 ~ 13687836 (-)
G204671 NA other downstream 1766363 11583200 ~ 11584074 (-)
G204584 NA other downstream 2705750 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 3591370 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 5606865 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 6558446 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 377353 13733713 ~ 13739921 (-)
G205375 NA other upstream 387993 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 545843 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 586363 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 618317 13974677 ~ 13978450 (-)

Expression


Co-expression Network