LOC103037424 (smtnl1,LOC108269100,LOC107730587,LOC107661060,LOC107572821)


Basic Information

Item Value
gene id LOC103037424
gene name smtnl1,LOC108269100,LOC107730587,LOC107661060,LOC107572821
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13304416 ~ 13309323 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683604.1
TGGTTTCCAGCAGTAGCAGCTGTTAGGGGGTCTGGCTGAGCCAATATAACCAACACAACACTGCCTATTTCTGTAGCATGCGTTGTTCTAAAGgtcagagaaagagcaagagagtgagTCAGAaaatttacaggagagagagagagaaaaaggaaaagagaggaaaagaaatacAGATCTCGCTTTGACTGTGCAGTAACAGTGAAGTCTGAAAATTCTTTAGGCAGAACCCGAACACAAATGGATAACTCCACAGTGGCCAGTGGGACAGAGGAAAGCAAGAATAAGAATGTAGCAGAAGAATCCCCTGAGGAAGAAAGTGACGCTGGGCGGAACTCTGAGCCAACGAGCATGACCTCTAAAAGTAAAGGAGAAACTAATGAGGAAAATGGAGAGGAAGAGCCACATCCACATGCAGGATCCAGTGAAGAAAAGACAGAAGTTACCACAGAGTGTAATCATGCCCAAGACACTGAAGGAGAAAAGGATTTAAACaaagacagagaggaagagactttgacagaggaagagaaaaaagagtgtGGCAGCAGAAAAGATACTCATATAGAGAGGGGCAAGAGTACACATAAAGATGagtcaaaaaaagagaaagaagtcACAGAAACAGGAGACAACAAACttgctgaagaagaagaaggaaagacTAAAGCTAAAAGCGACTCAGTAAAAGAGCAACCATGTGAGAAAGATAAAAACATGAAAGAAGAtgaaaaagagaatgagaaagacaaAGCCTCAAAATGTTCAGTTCAAGAGACAGCAGATCAGAAAACCAAGgccaaagaaaaagaagaaatcaaAGATAAACCAGAAAAGGTGAAAAGCAAAGGTGGGGCCACTCCGTCTTCCTCCAGTCTTCGAGCACTGGCTTCTTCACGGCCGAGGAGTGCCCGACCTTCAGCCCGAAGGGAAGCCATGGCAAAGTTTCAACAGGATCAGACTCCGGTGGTCCGCAACTTTAAGGTCCAGAAAATGTCTGTGGGCGTGTCTGGTGGGGCATCGATCAAACAGAAAATACTCCAATGGTGTAGCAACAAAACACGAGACTATGAGGGTGTTTCGATCGAGAACTTCTCATCCTCCTGGAGCGATGGCCTGGCTTTCTGTGCACTTGTTCACCGATTCTTCCCTACTGCGTTTGACTTCTCCACACTTAAAGCCAGTGAGCGAGAAAAGAACTTCACCCTGGCCTTCAGCACTGCAGAAACTCTGGCTGACTGCTGCCCCCTCCTGGACGTATCAGATATGTTACTCATGGGAAAGAAGCCAGACCCTTTTAGTGTATTCACCTATGTCCAGTCCCTCTGCCAGCACCTCTCTAAAatagagcgagagaggaaaGAGCGAGAGAAGGCTGACGATGCCAAGAATAAGGGTGAAACTGATGAACAAGGTGAAACAGAAGGACAGGAACCAAGTGAAGACAGACAGCAGGTGAAAAGAACAggagaggagcaggaggaggagaaagcagaaggagaaggagagggGGATCCCGCTGAAGGGAAAGTTGGACctgaacaagaagaagaaggaccAAAGATGGAAACAGATCAAAATGACAATGTGGTAATCAGTGAGAAGTAAGACTTAGTAAATCTAGTAAATGAGCTACTGCCAGACAAAGCATGTGAGGAAGATAGAGTGGGGAAAGAACCAGAGGCACAAGTCACAAGAACTAAAGATGATTagattgttattattaataatatagctATAATAATGTGGGTTAAGTCCCTtcaatattataaaaaacagtattacTAATGTCAGCTACACTGAAATAGatacagcaaatatacagttttaACTATAATAGCTGTAATACAATTgatacagtattaataatatatacagtaataatattatacaatgctttaaaaaatatagtgatatttatgttgtgtgtttttgccaagaTTGTTTTTGTTACTATTATAAGCTACACAAATTACTGAATAGTCTTTAATATATGttatgctattttattattctctcactgaattattattattaaataattgaatGTGATTGTATGGCACAGGATCTACTGTTGATTTGTATGCTGACTGTTGTTAAGTGTTTGGAAAAtatgtcaaaaaataaatacaaatacatcaatttattataa

Function

symbol description
smtnl1 Predicted to be involved in actin cytoskeleton organization. Predicted to be part of filamentous actin. Predicted to be active in microtubule organizing center. Is expressed in atrium. Orthologous to human SMTNL1 (smoothelin like 1).

NR:

description
PREDICTED: smoothelin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683604.1 True 2152 mRNA 0.41 5 13304416 13309323

Neighbor

gene id symbol gene type direction distance location
phox2b phox2bb,phox2b,LOC107688610,LOC107730591,LOC107591903,LOC107661069,LOC107749715 coding downstream 41920 13259303 ~ 13262496 (-)
LOC103033266 NA coding downstream 403020 12893678 ~ 12901396 (-)
sqstm1 sqstm1 coding downstream 775837 12522775 ~ 12528579 (-)
ptcd3 NA coding downstream 841663 12446726 ~ 12462753 (-)
mxd3 mxd3,LOC107550994,LOC107712304,LOC107706726,LOC107558056 coding downstream 888480 12408735 ~ 12415936 (-)
LOC103034080 NA coding upstream 32498 13341821 ~ 13347405 (-)
LOC111195721 NA coding upstream 41114 13350437 ~ 13356360 (-)
LOC103037758 jakmip1,LOC108438378,LOC108268433 coding upstream 73489 13382812 ~ 13438173 (-)
fgfrl1 fgfrl1,LOC107730574 coding upstream 227166 13536489 ~ 13547597 (-)
LOC103037875 NA coding upstream 417342 13726665 ~ 13733660 (-)
LOC111195727 NA non-coding downstream 5642 13287852 ~ 13298774 (-)
LOC111195722 NA non-coding downstream 271288 13024268 ~ 13033128 (-)
LOC111195725 NA non-coding downstream 291416 13006746 ~ 13013000 (-)
G204952 NA non-coding downstream 297709 13006478 ~ 13006707 (-)
G204946 NA non-coding downstream 398404 12905194 ~ 12906012 (-)
LOC111195723 NA non-coding upstream 10989 13320312 ~ 13322121 (-)
G205327 NA non-coding upstream 271921 13581244 ~ 13683903 (-)
G205332 NA non-coding upstream 285872 13595195 ~ 13598025 (-)
G205343 NA non-coding upstream 325401 13634724 ~ 13650827 (-)
G205345 NA non-coding upstream 329251 13638574 ~ 13643510 (-)
G204671 NA other downstream 1720342 11583200 ~ 11584074 (-)
G204584 NA other downstream 2659729 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 3545349 9723402 ~ 9759067 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 5560844 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 6512425 6614604 ~ 6791991 (-)
LOC111195729 NA other upstream 424390 13733713 ~ 13739921 (-)
G205375 NA other upstream 435030 13744353 ~ 13777621 (-)
LOC103033675 LOC108410893 other upstream 592880 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 633400 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 665354 13974677 ~ 13978450 (-)

Expression


Co-expression Network