G50880


Basic Information

Item Value
gene id G50880
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 644785 ~ 645049 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU57902
TGCGGAGGTCTGTCTCAGCAGCAAGATCTCGCTGAGGAAGAGGAGGAGGAAGGCTTTCATGTTGTCCTTTTTTTCCTCAGAGAAAACACAAAACAGAGCTCATATAGTCCACTCAAACCTCTTCTCTCTAAACTTCTACAGTTGTTCTTTCTTGAATCATATGTTTTCTCTTTGTCCTTTAAAGTGACCTCAGATCAGGTGTCAATGGACACTCTCTGTGAGAGAAACTGTGTAAAACTATGATTTTGTGTGTTTGGAAATGGGT

Function

NR:

description
PREDICTED: echinoderm microtubule-associated protein-like 4 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57902 True 265 lncRNA 0.41 1 644785 645049

Neighbor

gene id symbol gene type direction distance location
CI01000009_00620687_00621072 NA coding upstream 23248 620687 ~ 621537 (+)
CI01000009_00611583_00617762 TFG coding upstream 27023 611305 ~ 617762 (+)
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding upstream 35410 608513 ~ 609375 (+)
CI01000009_00605366_00605964 COL8A1, COL8A1A coding upstream 38715 605366 ~ 606070 (+)
CI01000009_00603498_00605392 NA coding upstream 39393 603228 ~ 605392 (+)
CI01000009_00704243_00710805 NA coding downstream 59016 704065 ~ 710805 (+)
CI01000009_00719164_00724772 SRPX coding downstream 74115 719164 ~ 725051 (+)
CI01000009_00805606_00808374 NA coding downstream 159855 804904 ~ 808404 (+)
CI01000009_00852319_00853083 CX45.6 coding downstream 206193 851242 ~ 853461 (+)
CI01000009_00913995_00916434 COMMD6 coding downstream 268946 913995 ~ 916565 (+)
G50883 NA non-coding upstream 8080 636474 ~ 636705 (+)
G50881 NA non-coding upstream 20828 623734 ~ 623957 (+)
G50855 NA non-coding upstream 54172 590132 ~ 590613 (+)
G50735 NA non-coding upstream 106274 538171 ~ 538511 (+)
G50719 NA non-coding upstream 140166 504418 ~ 504619 (+)
G50878 NA non-coding downstream 48977 694026 ~ 695215 (+)
G50902 NA non-coding downstream 52556 697605 ~ 697840 (+)
G50876 NA non-coding downstream 82024 727073 ~ 728482 (+)
G50879 NA non-coding downstream 83814 728863 ~ 729820 (+)
G50909 NA non-coding downstream 90678 735727 ~ 736025 (+)
CI01000009_00094836_00095813 NA other upstream 548998 94371 ~ 97230 (+)
G50920 NA other downstream 124792 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 777798 1429873 ~ 1435328 (+)
G51122 NA other downstream 1035097 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1249186 1897343 ~ 1919516 (+)
G51274 NA other downstream 1610050 2255099 ~ 2350486 (+)

Expression


Co-expression Network