sil1


Basic Information

Item Value
gene id sil1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13889589 ~ 13898713 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683633.1
GGGTAGCACGTGCTTTAGTTGCTTCCACGAGCTTCGGGAATTAACAACACTGAAGTACACTtgtaataataaatcatatttctgttattttgggAACTTTAGCGACATGATAGCgaataaaatcagtgttttaaaattaGTTCTTATTTTCTGCTGTTTAAATCTACTCCTCTCCCGCTGCTACAGTGACCAGTTTTCTACAGCTGTGACTGTTAGAGAAGACGATGGCGATCAGCAGAAGGAGGATCATGACTCTGATCAGACTGAGGATCCTGAAGATTTAGAGGTGTTTTATCCCACAGCTGAATGGCAAACTCTCAAACCAGGTCAGGCAGTGCCGGCGGGGTCTCACGTCAGGCTGAATCTTCAGACGGGAGAACGAGAAGTTAAACTGGGAGAAGAGGAGGGGGTTAAACACTGGAAACAAGGAGAGAGGCCAGAAATGAACAAGCAGTCTGCTTCATTCTCCACTACGGAACTGAAAGAGGCTctgaagaagtttaaagcagaaaATGACGACCCGGTAAAGAAGAACACGGAGCAGGCTGAAGAGTCTGGGGGTTCTCAGTTCCGCTCGGTGGACGAGTTGAAGAGAGAAATGGAAACCATGAACTTTCTGGTGGAGACGGATGAGCAGATCATGGGTAAACTGCTGGCCCAGTTTAACAGCACCAGCGGAACCGTGGACCAGAGAGTGTCCGCTCTGCTGGAACTGGAGTACCTGGTTCACCAGgtGGATAATGCTAAGAATCTGGTGTCGATGGGGGGAATGAAGCTGGTAACTGATGCTTTAAACAGTACTGATATCAGACTTCAGGAGAGCGCAGCGTTCGTACTCGGATCTGCTGTTTCGAGTAACCCATCAGTCCAGGTGGAGGCGTTAGAGGGTGGAGCTTTACAGAAACTACTCACATTACTCACTGCCCCTCACCCAGtacctgttaaaaaaaagGCGCTGTTCGCCGTGGCGTGTTTGCTGCATCACTTCCCCTTCGCTCAGAGTCACTTTGTGAAGCTGGGGGGGCTGCAGGTCCTGGGGGAGCTGTTTCAGGAACAGGGCTCAGATTCTCTCAGACTGAGGGTCATCACTATGCTCTACGACATGATCACCGAGAAGGAGCTGGTCCTGCAGGCGGGTGTGGACGGTGGGGAGAGCTGGTCGGATCAGTATCTGCAGCAGTACGCTGAGCTCTCTCTCCAGCCCACGCTGACGGAGCTGGGCTGGTGCCGGCTGGTACCGGAGCTGCTGGTCTCACCGGATCACGATCAGCGGGAAAAGGCCCTGCGGACTCTACTGGCCATGATGCCCGACTGCCGGCCTCAGTACCAGCAGAACCCGGCCCTGCTGGCGTCTCTCCGGACCCTGCGGGAGGAGTATAGCGCCCTGTCCCTCTCCGAGCAGAACCAGGGAGAGACGGACGGATATTTCGGGGAGATCTTGGCGCTGTTGGACTCTTTAGTattgaaaacacattaaaacacacaaagagacttgttaattatgtattatattattatttaatgtgcaataaaaaaaactttctaagAAAGGTCTGCTAtcaacatcattttttttctatttttatttatcagtgTGGTTCAGCTGGAAACTGTAGATGAACTTGAAGGTACTGATATAGAACGAGGAACTCTTCGTGGTtgattgtaaaaaataaatgacgcTGACGTTTCAGCAGCT

Function

NR:

description
PREDICTED: nucleotide exchange factor SIL1 isoform X1

GO: NA

KEGG:

id description
K14001 SIL1, SLS1; nucleotide exchange factor SIL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683633.1 True 1699 mRNA 0.49 9 13889589 13898713

Neighbor

gene id symbol gene type direction distance location
csnk1a1 csnk1a1,LOC106611977,LOC107554841,LOC107742481,LOC106604944,LOC107593197 coding downstream 2503 13859221 ~ 13887086 (-)
hspa9 hspa9,LOC106604950,LOC106611979 coding downstream 90956 13780145 ~ 13798633 (-)
LOC111195730 NA coding downstream 111993 13774336 ~ 13777596 (-)
LOC103037229 NA coding downstream 122498 13765516 ~ 13767091 (-)
atoh8 atoh8,LOC107746166,LOC107688589,LOC107591885 coding downstream 125366 13751413 ~ 13764223 (-)
timm8a timm8a,LOC107593201,LOC107680336,LOC107742474 coding upstream 30249 13928962 ~ 13930912 (-)
btk btk coding upstream 42539 13941252 ~ 13973029 (-)
LOC111195849 NA coding upstream 2128004 16026717 ~ 16027163 (-)
LOC103026525 LOC108427881 coding upstream 2145465 16044178 ~ 16142579 (-)
trnae-uuc_23 NA coding upstream 2244575 16143288 ~ 16143359 (-)
G205387 NA non-coding downstream 55644 13833567 ~ 13833945 (-)
G205386 NA non-coding downstream 62202 13826512 ~ 13827387 (-)
G205378 NA non-coding downstream 110084 13768739 ~ 13779505 (-)
G205363 NA non-coding downstream 146242 13742620 ~ 13743347 (-)
G205361 hdac3,LOC103471067 non-coding downstream 201753 13685401 ~ 13687836 (-)
G205423 gsr,LOC107680979 non-coding upstream 87117 13985830 ~ 13991653 (-)
G205401 NA non-coding upstream 94040 13992753 ~ 13995460 (-)
G205448 NA non-coding upstream 331612 14230325 ~ 14230606 (-)
G205456 NA non-coding upstream 393333 14292046 ~ 14292683 (-)
G205459 NA non-coding upstream 410612 14309325 ~ 14309690 (-)
G205375 NA other downstream 111968 13744353 ~ 13777621 (-)
LOC111195729 NA other downstream 149668 13733713 ~ 13739921 (-)
G204671 NA other downstream 2305515 11583200 ~ 11584074 (-)
G204584 NA other downstream 3244902 10644254 ~ 10644687 (-)
LOC103046444 LOC108431107 other downstream 4130522 9723402 ~ 9759067 (-)
LOC103033675 LOC108410893 other upstream 3490 13902203 ~ 13918385 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 44010 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 75964 13974677 ~ 13978450 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other upstream 1509231 15407944 ~ 15567635 (-)
G205640 NA other upstream 1645204 15543917 ~ 15545622 (-)

Expression


Co-expression Network