timm8a (timm8a,LOC107593201,LOC107680336,LOC107742474)


Basic Information

Item Value
gene id timm8a
gene name timm8a,LOC107593201,LOC107680336,LOC107742474
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 13928962 ~ 13930912 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683634.1
GGCCGGTAGGGGGCGGAACTGCAGGATTACTTCCTCTGATCCAGAAGATGACtgtgaggaagaagaagagcagCAGCGCAGAGTGAAGTAGGGCTGTATATGAAGGTCAGGGTGATAAATCCTGATAAAACACCGAGTTCCTGCGTTAATCTGCTGTAGATCAGTGTGATGGATTCTCAGGGTGTGGCGGCGGATCCCCACCTGCAGCAGTTTATCGAGGTGGAGTCTCAGAAGCAGAGGTTTCAGCAGCTGGTCCACCAGATGACTGAGGTGTGCTGGGAGAAGTGCATGGATAAGCCTGGCCCGAAGCTGGACTCCAGGACTGAAGTCTGTTTTGTTAACTGTGTTGAACGTTTTATTGACACGAGTCAGTTCATCCTCAACAGACTGGAACAAACTCAGAGGACGAGAGGCTCGTTCTCAGAGACGATAACGGACTGACCTCCATCCAGAAAACTAATGGAAATTGTCTGTTGTCTCGTCAAACAAAGTGCCTCACTGTGAAGTTTATCAGAACACCAGTTC

Function

symbol description
timm8a Predicted to enable metal ion binding activity. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Human ortholog(s) of this gene implicated in deafness-dystonia-optic neuronopathy syndrome and dystonia. Orthologous to human TIMM8A (translocase of inner mitochondrial membrane 8A).

NR:

description
Mitochondrial import inner membrane translocase subunit Tim8 A

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K17780 TIM8; mitochondrial import inner membrane translocase subunit TIM8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683634.1 True 525 mRNA 0.50 2 13928962 13930912

Neighbor

gene id symbol gene type direction distance location
sil1 NA coding downstream 30249 13889589 ~ 13898713 (-)
csnk1a1 csnk1a1,LOC106611977,LOC107554841,LOC107742481,LOC106604944,LOC107593197 coding downstream 41876 13859221 ~ 13887086 (-)
hspa9 hspa9,LOC106604950,LOC106611979 coding downstream 130329 13780145 ~ 13798633 (-)
LOC111195730 NA coding downstream 151366 13774336 ~ 13777596 (-)
LOC103037229 NA coding downstream 161871 13765516 ~ 13767091 (-)
btk btk coding upstream 10340 13941252 ~ 13973029 (-)
LOC111195849 NA coding upstream 2095805 16026717 ~ 16027163 (-)
LOC103026525 LOC108427881 coding upstream 2113266 16044178 ~ 16142579 (-)
trnae-uuc_23 NA coding upstream 2212376 16143288 ~ 16143359 (-)
cenpi cenpi coding upstream 2564444 16495356 ~ 16521829 (-)
G205387 NA non-coding downstream 95017 13833567 ~ 13833945 (-)
G205386 NA non-coding downstream 101575 13826512 ~ 13827387 (-)
G205378 NA non-coding downstream 149457 13768739 ~ 13779505 (-)
G205363 NA non-coding downstream 185615 13742620 ~ 13743347 (-)
G205361 hdac3,LOC103471067 non-coding downstream 241126 13685401 ~ 13687836 (-)
G205423 gsr,LOC107680979 non-coding upstream 54918 13985830 ~ 13991653 (-)
G205401 NA non-coding upstream 61841 13992753 ~ 13995460 (-)
G205448 NA non-coding upstream 299413 14230325 ~ 14230606 (-)
G205456 NA non-coding upstream 361134 14292046 ~ 14292683 (-)
G205459 NA non-coding upstream 378413 14309325 ~ 14309690 (-)
LOC103033675 LOC108410893 other downstream 10577 13902203 ~ 13918385 (-)
G205375 NA other downstream 151341 13744353 ~ 13777621 (-)
LOC111195729 NA other downstream 189041 13733713 ~ 13739921 (-)
G204671 NA other downstream 2344888 11583200 ~ 11584074 (-)
G204584 NA other downstream 3284275 10644254 ~ 10644687 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other upstream 11811 13942723 ~ 14050562 (-)
LOC103035169 LOC108427892,LOC107740141,LOC107554835,LOC107593202,LOC108268827 other upstream 43765 13974677 ~ 13978450 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other upstream 1477032 15407944 ~ 15567635 (-)
G205640 NA other upstream 1613005 15543917 ~ 15545622 (-)
G205670 NA other upstream 1900738 15831650 ~ 15832094 (-)

Expression


Co-expression Network