LOC103026525 (LOC108427881)


Basic Information

Item Value
gene id LOC103026525
gene name LOC108427881
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 16044178 ~ 16142579 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683650.1
GGCTGCTCGGGTTGGTGAGTCAGAGTGAGAGCGAGGGAGTCGCTGCtgcacttcttcttcttctttttcttcttcttactgAAGAAAAacgagaggaaaaagagaaatcGCGCGGCCTCCtccacttttacactttttttcatgTGAACTTTTTCTGCTGTTGGTGCGAAGAGGAGCGGTGGAGGGCAGCCCGGCGTCCGGCAGCTTCAGCGGCCCTGTTCCGGCACTCTAGACACACCCTTGGatatcttttttcttcttttatttatcttttttcctGCTGTTCTTCGGGTTTTTACATTTTTCGctagtttttttgttgtaattcTCGTTTGAAATCTTCTGCGGATCTTCTACGAATCATGGAGCGTGAGAGAAAGAGCTGCTGTGCTGAGGTGTAGAAGCTCCAGATGCCGCCAGAGTGGCACTCAGCCTGAGAACCAGGGAAGAGCCGCCACCCTCCTCCATCAGACGCCGCCACCCACAATCCCCCGCCACTGAAAAGCAGCCGGCAGAGTgaggaacagaaagagagaaagagaaagagagagagagaacagcaaCACAAAAACCTAAAGCAGAAAAAGGGAACTAGGAGGGGTTGCGCCGTTTTTGGTCCCCAGTATCGCCTCTTGTTTGTGAAAGCAGCAGAATTTCCTCAGCAGTGGGCCGGCCGGACTCCGGGTCTTTTTCTCGTGGCGAGGGGCGTGGTGGTTTGGTGTGGAGAGCGTGGGGGATTCTCTGGAGAGGCAGGAGTATCTGCCTGTCAGTCTGAGCCCTCCCCAAAACCCCGCCCCCCCATTCCCACACCAGCTGCTGAAGCACCATGACCACTGCAGTCCAGCCCAGCGAGCTCGTCTTTGAGTTCGCCAGCAATGGCATGGATGAAATCAACCAGCTGGACGACCCGTCAGTGTTCCCCGCCGTCATCGTGGAGCATGTCCCCGCCGCTGACCTCATGCAGGTGTACTCAGGTCTGGAGGCGGACGAGGTGACCAATGGCATCATGGTGGACACGATGCAGGAcgtggtggaggagagcatcaTGGTGGGAGATGTGGGGCTCTCAGTGGAGACGCCGGTCTCTGGAGCAGAAGATAATTTAGAGACGACGGAGGCGGCCGAGGCTCTGCTGAACATGGAGTCTCCCAACAACATCCTGGATGAGAAGCGAATGATTCATCCATACGGAGCTCTGCTGGATTCAGATCTGACCTACATCTCCCTGCGGCCGGAGCAGCTCTCCGCCGACTGCATGGACGTGTCTCTGGACGAGGAGACGTCCTCCATGGACGAGATTCCTCAGAAGACTGTCTGCAAACCGGTCAGGAAAAACAAAGtaCGCAAACCGAGAATGGTGCGCCCCTGTTCCCCCATCACCAACCCAACACTTCCCCTGAAGAAGAAGAGCAAAGAGGGAAAAGGTAACACCATCTACCTGTGGGAGTTCCTGCTGGCTCTGCTGCAGGACAAGAACACCTGTCCCAAATACATCAAGTGGACGCAGAGAGAGAAGGGCATCTTCAAGCTGGTGGACTCCAAGGCCGTGTCCAAGCTGTGGGGGAAGCATAAGAATAAGCCGGATATGAACTACGAGACCATGGGCCGAGCACTCAGgtattACTATCAGAGGGGTATCCTGGCGAAGGTCGAGGGCCAGCGGCTGGTTTATCAGTTTAAGGAGATGCCCACGGACCTGGTGGTGATTGATGAAGACGAGGATCAGTGTGGAGACTCCAGCCCGGCGTACGGAGGCCAGCGCTCCGCTCCCGGCGGCCGGGCGGTGAGCCGCGGGGCGTCCCGGGCCCAGGGGAAAGGATCGGGACACATGCCGGCCAGATCAGTGAAGAGAGAGCCGAGTCCCGGCCTGCTGTACCACACCGCCAGCGGCAAACACACCCAACACCTCCTGCAGACCGTACACGTCCTACAACCCAACCAGGGAGCTGCTGTTcctgcacccacacacactgtgagAACCATTAACATGCCCGCCACAGTTCCCATGGTGCTCACCTCCGGACCGCAGGGAGGAGCTCCGGTCACCCTCCAGACCATGCCCTTCTCCTCAGTGCTGTCCAACGGGGACTCCTCCGCCCACAGGTCCCCGCCTCGGGTCATCCTCCACACCGTGCCTTCCTCCAGTCCCGGGGGCAAAGACGTGTTAACCATCCAGACCGCCTCGCTGACCACCGACCACGGTGCCGTCCAGCACCCCCAGCAGCTCCTGATGTCCGGCGGCGGCGCGGCGCAGCATTCGGGCGCTCTGAACGGCCTGACCCGCCTCGTCACCCTCAACGCCTCCAGCACAGGGCAGCCTGTGGTCGCCCAGCAGCCCGGGACGGTCATCGCCACCGTGCTGAAGTCCGGCGAACTGCAGAGCCTGCAGGTCAAAGAGGAGGTCCTGGACCCTCAGTACCTTCAGTCGTTGGTTAACTGCAACCCCGTATCCATCGGCAACCACTTTTGCAAGGAGGAAATGGACGCGGGGGAGGCGGAGCTTTGCCAAAAGACTGTAATCATCGGTGCCGGCGGTCAAATAATCAACGGACACTCAAGAGACATGAGTTCTGAGCTGGCGAGAAGCCCGAGCGAAGGTTTGACCCCTGTGGAGGAGCTGGAGGTCAAAAGCGAAATGGTAAATGGTACCATTGGTATTTCCTCACCAACCACCAtcaccaacaccaacaccaccaccatgcagATACCCACCACTCAGTTCATCCAGGTAAAGATGGAGATTTCAGAGACCTAAAAAGAAGAGAACCTGAGACGAACCAGCCCATATCAGAACCAGCCCAGAACCAATTaacccaacaacaaaaaaaaaacccaaaagaaCCAACCAGAAA
>XM_022683651.1
GCACGAGACACCAGCACAGCCCGGAGACTGGTCTGACTGGGCTGCTGATCCGGACGGGGAGAGTCTGACCCGCTGAGAGACCAGTTCTCCCAGTTCCCCCCGCGCTGAGGAGGATTAAATACACACTGGATTACTGATAAACACTTTATTCATCTGAACAGCGCAGAGTCATCAGCAGCGCGCGCCCTGCGCTCAACACGCAACTCCTTACGAGAACTGCCGTGACGTCATGAGTACGGTGTAGAAGCTCCAGATGCCGCCAGAGTGGCACTCAGCCTGAGAACCAGGGAAGAGCCGCCACCCTCCTCCATCAGACGCCGCCACCCACAATCCCCCGCCACTGAAAAGCAGCCGGCAGAGTgaggaacagaaagagagaaagagaaagagagagagagaacagcaaCACAAAAACCTAAAGCAGAAAAAGGGAACTAGGAGGGGTTGCGCCGTTTTTGGTCCCCAGTATCGCCTCTTGTTTGTGAAAGCAGCAGAATTTCCTCAGCAGTGGGCCGGCCGGACTCCGGGTCTTTTTCTCGTGGCGAGGGGCGTGGTGGTTTGGTGTGGAGAGCGTGGGGGATTCTCTGGAGAGGCAGGAGTATCTGCCTGTCAGTCTGAGCCCTCCCCAAAACCCCGCCCCCCCATTCCCACACCAGCTGCTGAAGCACCATGACCACTGCAGTCCAGCCCAGCGAGCTCGTCTTTGAGTTCGCCAGCAATGGCATGGATGAAATCAACCAGCTGGACGACCCGTCAGTGTTCCCCGCCGTCATCGTGGAGCATGTCCCCGCCGCTGACCTCATGCAGGTGTACTCAGGTCTGGAGGCGGACGAGGTGACCAATGGCATCATGGTGGACACGATGCAGGAcgtggtggaggagagcatcaTGGTGGGAGATGTGGGGCTCTCAGTGGAGACGCCGGTCTCTGGAGCAGAAGATAATTTAGAGACGACGGAGGCGGCCGAGGCTCTGCTGAACATGGAGTCTCCCAACAACATCCTGGATGAGAAGCGAATGATTCATCCATACGGAGCTCTGCTGGATTCAGATCTGACCTACATCTCCCTGCGGCCGGAGCAGCTCTCCGCCGACTGCATGGACGTGTCTCTGGACGAGGAGACGTCCTCCATGGACGAGATTCCTCAGAAGACTGTCTGCAAACCGGTCAGGAAAAACAAAGtaCGCAAACCGAGAATGGTGCGCCCCTGTTCCCCCATCACCAACCCAACACTTCCCCTGAAGAAGAAGAGCAAAGAGGGAAAAGGTAACACCATCTACCTGTGGGAGTTCCTGCTGGCTCTGCTGCAGGACAAGAACACCTGTCCCAAATACATCAAGTGGACGCAGAGAGAGAAGGGCATCTTCAAGCTGGTGGACTCCAAGGCCGTGTCCAAGCTGTGGGGGAAGCATAAGAATAAGCCGGATATGAACTACGAGACCATGGGCCGAGCACTCAGgtattACTATCAGAGGGGTATCCTGGCGAAGGTCGAGGGCCAGCGGCTGGTTTATCAGTTTAAGGAGATGCCCACGGACCTGGTGGTGATTGATGAAGACGAGGATCAGTGTGGAGACTCCAGCCCGGCGTACGGAGGCCAGCGCTCCGCTCCCGGCGGCCGGGCGGTGAGCCGCGGGGCGTCCCGGGCCCAGGGGAAAGGATCGGGACACATGCCGGCCAGATCAGTGAAGAGAGAGCCGAGTCCCGGCCTGCTGTACCACACCGCCAGCGGCAAACACACCCAACACCTCCTGCAGACCGTACACGTCCTACAACCCAACCAGGGAGCTGCTGTTcctgcacccacacacactgtgagAACCATTAACATGCCCGCCACAGTTCCCATGGTGCTCACCTCCGGACCGCAGGGAGGAGCTCCGGTCACCCTCCAGACCATGCCCTTCTCCTCAGTGCTGTCCAACGGGGACTCCTCCGCCCACAGGTCCCCGCCTCGGGTCATCCTCCACACCGTGCCTTCCTCCAGTCCCGGGGGCAAAGACGTGTTAACCATCCAGACCGCCTCGCTGACCACCGACCACGGTGCCGTCCAGCACCCCCAGCAGCTCCTGATGTCCGGCGGCGGCGCGGCGCAGCATTCGGGCGCTCTGAACGGCCTGACCCGCCTCGTCACCCTCAACGCCTCCAGCACAGGGCAGCCTGTGGTCGCCCAGCAGCCCGGGACGGTCATCGCCACCGTGCTGAAGTCCGGCGAACTGCAGAGCCTGCAGGTCAAAGAGGAGGTCCTGGACCCTCAGTACCTTCAGTCGTTGGTTAACTGCAACCCCGTATCCATCGGCAACCACTTTTGCAAGGAGGAAATGGACGCGGGGGAGGCGGAGCTTTGCCAAAAGACTGTAATCATCGGTGCCGGCGGTCAAATAATCAACGGACACTCAAGAGACATGAGTTCTGAGCTGGCGAGAAGCCCGAGCGAAGGTTTGACCCCTGTGGAGGAGCTGGAGGTCAAAAGCGAAATGGTAAATGGTACCATTGGTATTTCCTCACCAACCACCAtcaccaacaccaacaccaccaccatgcagATACCCACCACTCAGTTCATCCAGGTAAAGATGGAGATTTCAGAGACCTAAAAAGAAGAGAACCTGAGACGAACCAGCCCATATCAGAACCAGCCCAGAACCAATTaacccaacaacaaaaaaaaaacccaaaagaaCCAACCAGAAA

Function

NR:

description
PREDICTED: ETS-related transcription factor Elf-1-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09428 ELF1_2_4; E74-like factor 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683650.1 True 2852 mRNA 0.57 9 16044178 16116168
XM_022683651.1 False 2695 mRNA 0.58 9 16044178 16142579

Neighbor

gene id symbol gene type direction distance location
LOC111195849 NA coding downstream 17015 16026717 ~ 16027163 (-)
btk btk coding downstream 2071149 13941252 ~ 13973029 (-)
timm8a timm8a,LOC107593201,LOC107680336,LOC107742474 coding downstream 2113266 13928962 ~ 13930912 (-)
sil1 NA coding downstream 2145465 13889589 ~ 13898713 (-)
csnk1a1 csnk1a1,LOC106611977,LOC107554841,LOC107742481,LOC106604944,LOC107593197 coding downstream 2157092 13859221 ~ 13887086 (-)
trnae-uuc_23 NA coding upstream 709 16143288 ~ 16143359 (-)
cenpi cenpi coding upstream 352777 16495356 ~ 16521829 (-)
tmem35a tmem35a,tmem35,LOC107724834,LOC107688707 coding upstream 380507 16523086 ~ 16527085 (-)
arl13a arl13a coding upstream 393186 16535765 ~ 16545692 (-)
cstf2 cstf2,LOC107688691 coding upstream 461838 16604417 ~ 16627114 (-)
G205795 NA non-coding downstream 29495 16014229 ~ 16014683 (-)
G205778 NA non-coding downstream 105883 15832297 ~ 15938295 (-)
G205782 NA non-coding downstream 162122 15881671 ~ 15882056 (-)
G205667 NA non-coding downstream 243904 15799803 ~ 15800274 (-)
G205663 NA non-coding downstream 315211 15727851 ~ 15728967 (-)
G205812 NA non-coding upstream 53527 16196106 ~ 16200003 (-)
G205814 NA non-coding upstream 200662 16343241 ~ 16347559 (-)
G205859 NA non-coding upstream 258499 16401078 ~ 16403080 (-)
G205883 NA non-coding upstream 388932 16531511 ~ 16531867 (-)
G205916 NA non-coding upstream 459821 16602400 ~ 16653278 (-)
G205670 NA other downstream 212084 15831650 ~ 15832094 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 476543 15407944 ~ 15567635 (-)
G205640 NA other downstream 498556 15543917 ~ 15545622 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other downstream 1993616 13942723 ~ 14050562 (-)
drp2 drp2,LOC107724836,LOC107593231 other upstream 61358 16203937 ~ 16365647 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 1117207 17259786 ~ 17300993 (-)
LOC103033759 NA other upstream 1701387 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 1897096 18039675 ~ 18041939 (-)
G206575 NA other upstream 2695790 18838369 ~ 18838916 (-)

Expression


Co-expression Network