cenpi (cenpi)


Basic Information

Item Value
gene id cenpi
gene name cenpi
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 16495356 ~ 16521829 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683656.1
GTCCAAACGGTCGCGCGGATGATTCGAGTTTGATTTGAATCTGCTGTGGGAGTGGAGcggctatgctaagctaagctaagctacacACAGCGCTGAGTTATGCAGCGCTAGCTATGGATAACTCATCTATTTTGTCCGGGGCGGCTCCGGACACCTCCCGGGACTCCTCCGGTTCTGCTCCCGGTAACAGGAGCTTACGGGTGGCGGAGAATGAGAAGAGGAGAAGCGAGAGAGACCCGGTCCGGTCCGCGCTGAGCTTTCTCTCTCAGGTGCAAGACGGCACTATTGTGAAAGGAAATGACCAGCTGGAGAAGAgtctggtggtggtggagacTGTTGCTCTTGGTCGGGGTCTCCCTCCTGAAGCTGTTTCCTTGCTTCTTGACTTGGCCTTAAGTCTCCGTGCAGGCAGTGTGAACTGTGGCCGAATTTTGAAGTTTCTAATACCTGCTTCAGTAGTGCCTCAGGAGGCCGTTGTACGAGGAGTCTCATGGCTTTGTGTGGGAAGATTGCCAATGAATTCTCAGGTTCTTTTTCTTCGCTGGGTTCTCACTGTTTTTGACCTTATTGACTTCAAAGACCACCTAAGAGCCATTTATGGCTTCATTTTTAGCTTTGTGACTGAAGAAAATCTGtgtcCCTTCATCTGCCACCTGTTGTACCTTTTAACAATGAGGGAGCATGTTCAACCATACAGAGTGAGAAAACTGTTGGAAATCCAGGCTAAAATGggtaGACAGCCTTACCTGATGCAGCTGCTTGCCCTGTACAAAGTCTTCCGGCCTGAGCTGGTGTCTCTCTCAGTACCATCAAGAATGAGGGCTGGATTCAAGAACTATAATTCCACCTGGAAGGCGACTCTCACTGCTGTACAGCGGAAGAACAGGGGTGATGTGACTGCAGACCTCAGCCTCACTACAGAGTTAAAGGAAAAACCTGCTTCTAGAAAAAGGAAACTGCATCATCTGGAGGTGCCTGCTCTGAGCTCAGCGTTTGACACCAGCGCTGAGAGGAAAGTCTTCCGTCTGCAGGAAATGCGCACCTTTGAAGAGCTATTGCAGAACATCCACAATATAGAGCTGCCAGCCCAAATGGGTTCTCTCCTGGGATCTTCTCTGGCTCTCCACTTTCTGGACTGTGTTCAAGACGAGTCTGCCTTCCTGCGCCTCAACTTCTGGCTCGGACACTCGCTGCAGGAGGAGTTCCTGCTGTGTTCTGCGGATGGAGGCTCGGACAGCCCGGATGAAGTTGCGAGGTTCCTAAATACTGTGCTCTCTTCACAACAGTTCCTCCAGgaGGGTTTCTTCAGCACAGAGAGCTTCCTCTACAAGTTCCTGAGTGTGTGGGATGGCTCGCTGCTACGGACCCACATCTTGGATCTGCTCAGTCACATTCCTTTGATGCCCAGCCATTATATCAAGATTCTTGTCTTTGAGCCACTGATGCAACTCTACTTCACCTCAACCGTGTTCTTTAAGTGTAGTGTTATCGAGTGTCTCAATAACATGCTGGTGAAGTGGCTGACCTGGCATTCTGTCAACGCTCTGGAGGAAGGTCTGGACATCAGCCTCAACAGCAACGGCACAGTtactaTGACCCTGTCTGGCTTCATGGATACAGTCATAGAGCTGGTGCGGTTTGTTGGACGTCTGGCTTCGGAGGGATTACGGCTGGAGAACTGCCATGTTCTGCTCCTCAGCCAAACACTCGCTTTCTATGAGACGGTGTGCGATATGTTTGTGAGATATGGCTTGCCTCTGGTCATCATGCCCCCGGCTGGCGTGTTTTATCCCGCTCTCCTCGCTACAGACTCGCTCTCTGTGGATCGGCTAGGCTACATAATGTACAGatACCGGAAAAATCTGACCTTGGCTAAAAAGCAAGagcagcagagtgagCAAACATTTCACATAAGCAGGAACACGTACCAAGAGTTTAACCAGCACCTTGTGGCCATGGTGAGCTGCCTGTGGAACTCCAAGTCGTTCTTGCCAGGCACCGGCATCGAGATTGACAAGCAGATGCTCCTCCAGTCCAAAGTGTCAGAGCACTGGAGCCATTTTGACCTTGTTCACCACCCAGCCTTCTTTAAGTACGCCTTTGAGTTTCACCAGAAGTGCTGGCCAGCGAGGAGCAGCGTGGACCTGGCCTCCATAAAGGTCGGGAAATACTGGAACTGGTATGTGGAATTCCTGTTCAGCCAGGGCTTCGATGGCCTCAGTGACTTCATCCAGGTGAACACCGGCCACAGCAGCTCCTCCGGCTCAAGTAGCCAAGGTGATGGTCATCAAACCAACCAGGAGAGATGATGTATGGCAGAGGTTGTAATATCTGAAGAGGCTACGAAGAAACTCCATTGGCTGCACTGCACATGTGGCTCCGTGGTTTCTGTGGTcatgtacatattttattatctcCTCTAAACAGGACTTATAGAGGAAACCACAGTAAATTTGTAAATAGAACTGTATATTACTTTCTGCTTGGATTGTTCTTATTTGTTCATTATGCTCCTTTTTAAACTGTTCCTTAGTTAATTTAATATCCTTTCTTTTTACATAATGTCTTTGCTTTTAAGCACTGCCAATGTTTTGGACCCTGGCAAGTGATGTGTGTTTGATGATTACACAGCGCTACAACTACCCAGAGCTGGATAGACTAATTGACGACTATTTTATCTCATGTTCTTGCAAAATAATTATGGTAATCTTCACtttcttaagattttttttttgcctgtggAATCTTTTATGCTTACAAAAGTAATACACTAGTACAGAAAAAGTATAAAAGGGCttatccagtttttttttttttatctggtttTCCTTTTAATGTCCCTCAAACAAACACAATGTTTTATCTTAATTTCCAATTAAAATTCAGTGGAAAGAAGTTTGTGTTACCTTATATAGATATAAAAGGTATTTTGTTTGAGAAACATTCATTTGTTCAGTTTACCTAGACTTTAGGTATCTAATCAATACAGATCTACAGCAGTGGTCTTCATTTCTCCTGGAGAACTACTTTCTCTCAACAGGATCCAACCCTAATCCACCATTGCATTGTTATTCGCACAGTAATGTGCATTTTACGTTGCAGTTATGTTGCATTGGCTTAAGTATAAAATGTACATGTTCTTACCAGACTGTGGCCAAAATAAACAACTGTTcatttcc

Function

symbol description
cenpi Predicted to act upstream of or within centromere complex assembly. Predicted to be located in kinetochore and nucleus. Orthologous to human CENPI (centromere protein I).

NR:

description
centromere protein I-like isoform X1

GO:

id name namespace
GO:0034508 centromere complex assembly biological_process
GO:0000776 kinetochore cellular_component

KEGG:

id description
K11501 CENPI; centromere protein I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683656.1 True 3179 mRNA 0.46 20 16495356 16521829

Neighbor

gene id symbol gene type direction distance location
trnae-uuc_23 NA coding downstream 351997 16143288 ~ 16143359 (-)
LOC103026525 LOC108427881 coding downstream 352777 16044178 ~ 16142579 (-)
LOC111195849 NA coding downstream 468193 16026717 ~ 16027163 (-)
btk btk coding downstream 2522327 13941252 ~ 13973029 (-)
timm8a timm8a,LOC107593201,LOC107680336,LOC107742474 coding downstream 2564444 13928962 ~ 13930912 (-)
tmem35a tmem35a,tmem35,LOC107724834,LOC107688707 coding upstream 1257 16523086 ~ 16527085 (-)
arl13a arl13a coding upstream 13936 16535765 ~ 16545692 (-)
cstf2 cstf2,LOC107688691 coding upstream 82588 16604417 ~ 16627114 (-)
trnav-uac_1 NA coding upstream 104414 16626243 ~ 16626315 (-)
trnav-uac_2 NA coding upstream 105616 16627445 ~ 16627517 (-)
G205859 NA non-coding downstream 92276 16401078 ~ 16403080 (-)
G205814 NA non-coding downstream 147797 16343241 ~ 16347559 (-)
G205812 NA non-coding downstream 295353 16196106 ~ 16200003 (-)
G205799 NA non-coding downstream 403685 16054036 ~ 16091671 (-)
G205800 NA non-coding downstream 428640 16065584 ~ 16066716 (-)
G205883 NA non-coding upstream 9682 16531511 ~ 16531867 (-)
G205916 NA non-coding upstream 80571 16602400 ~ 16653278 (-)
G205997 NA non-coding upstream 223391 16745220 ~ 16745579 (-)
G206002 NA non-coding upstream 228993 16750822 ~ 16775704 (-)
G206006 rnaseh2c non-coding upstream 260297 16782126 ~ 16785058 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 129709 16203937 ~ 16365647 (-)
G205670 NA other downstream 663262 15831650 ~ 15832094 (-)
pcdh19 pcdh19,LOC107680972,LOC107740148,LOC107688683 other downstream 927721 15407944 ~ 15567635 (-)
G205640 NA other downstream 949734 15543917 ~ 15545622 (-)
LOC103033354 hnrnpa0b,LOC108269291,LOC107742478,LOC107680980,LOC107740136,LOC108427887,LOC107593198,LOC107554842,LOC107680347 other downstream 2444794 13942723 ~ 14050562 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other upstream 737957 17259786 ~ 17300993 (-)
LOC103033759 NA other upstream 1322137 17843966 ~ 17852191 (-)
LOC111195732 NA other upstream 1517846 18039675 ~ 18041939 (-)
G206575 NA other upstream 2316540 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 2515865 19037694 ~ 19127726 (-)

Expression


Co-expression Network